View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4863-Insertion-4 (Length: 790)
Name: NF4863-Insertion-4
Description: NF4863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4863-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 7 - 325
Target Start/End: Complemental strand, 14508152 - 14507833
Alignment:
| Q |
7 |
acctattagataccaagaattgtaatactaagtcaccccattggaaattaaatgcaaatgtttcttgcctatcattataccacttcaaa-ttaaaggcta |
105 |
Q |
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| T |
14508152 |
acctattagataccaagaattgtaatactaagtcaccccattggaaattaaatgcaaatgtttcttgccaatcattataccacttcaaaattaaaggcta |
14508053 |
T |
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| Q |
106 |
ggaagaggattatagtaatatccttgacggcgaagtaaaggataaagaaaatctttcaatgaaatctatgccacacctgttctaaaatattgcactccct |
205 |
Q |
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| T |
14508052 |
ggaagaggattatagtaatatccttgacggcgaagtaaaggataaagaaaatctttcaatgaaatctatgccacacctgttctaaaatattgcactccct |
14507953 |
T |
|
| Q |
206 |
aacctatatatcatacatctaaattcataagaacaaactcggaatgggtcaatgttacatctaaattcattattttatttacaaaatatggtcaaatggc |
305 |
Q |
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| T |
14507952 |
aacctatatatcatacatctaaattcataagaacaaactcggaatgggtcaatgttacatctaaattcattattttatttacaaaatatggtcaaatggc |
14507853 |
T |
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| Q |
306 |
tgacctgaaattctgattga |
325 |
Q |
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| T |
14507852 |
tgacctgaaattctgattga |
14507833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 324 - 614
Target Start/End: Complemental strand, 14507810 - 14507520
Alignment:
| Q |
324 |
gagcatgacatgtaatagctacttatcaagccaattgagtcatatgttacgacaaagtgtctcacgagtcgggtccttggcgacacacaattttctcaaa |
423 |
Q |
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| T |
14507810 |
gagcatgacatgtaatagctacttatcaagccaattgagtcatatgttaagacaaagtgtctcacgagtcgggtccttggcgacaaacaattttctcaaa |
14507711 |
T |
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| Q |
424 |
atctcttttcactttttcagttctatcaccattttggatctttgttagtgatagttagttactgttgatcacctaattttaatacagcttttggtaaaac |
523 |
Q |
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| T |
14507710 |
atctcttttcactttttcagttctatcaccattttggatctttgttagtgatagttagttactgttgatcacctaattttaatacagcttttggtaaaac |
14507611 |
T |
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| Q |
524 |
actttgtattttccttatgtattatagtcttcatccaatagtaagtaacagtcatattagtaaaaagtatttattctaaaaagaattgtac |
614 |
Q |
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| T |
14507610 |
actttgtattttccttatgtattatagtcttcatccaatagtaagtaacagtcatattagtaaaaagtatttattctaaaaagaattgtac |
14507520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 702 - 762
Target Start/End: Complemental strand, 14507453 - 14507394
Alignment:
| Q |
702 |
tagaaaaagagggtcaaaatccaaaaaagaaagagaactataaggttacgtgaatattttt |
762 |
Q |
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| T |
14507453 |
tagaaaaagagggtcaaaa-cctaaaaagaaagagaactataaggttacatgaatattttt |
14507394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 702 - 750
Target Start/End: Original strand, 24364923 - 24364970
Alignment:
| Q |
702 |
tagaaaaagagggtcaaaatccaaaaaagaaagagaactataaggttac |
750 |
Q |
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| T |
24364923 |
tagaaaaagagggtcaaagtcc-aaaatgaaagagaactataaggttac |
24364970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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