View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4863-Insertion-6 (Length: 434)
Name: NF4863-Insertion-6
Description: NF4863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4863-Insertion-6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 8 - 432
Target Start/End: Original strand, 7915160 - 7915584
Alignment:
| Q |
8 |
cttccttctttgtagcattctgatatgcttcgattcgcaatgttcgatttttgaagagcctctaacctagccttgataatatttgccttgcggagcacgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7915160 |
cttccttctttgtagcattctgatatgcttcgattcgcaatgttcgatttttgaagagcctctaacctagccttgataatatttgccttgcgcagcacgg |
7915259 |
T |
|
| Q |
108 |
caaccatatcggaatccattcgatctcttaacccgcgaagaactttcgcactgtgagtggattttgtctcttcattcagttgctgaagatctaataagag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7915260 |
caaccatatcggaatccattcgatctcttaacccgcgaagaactttcgcactgtgagtggattttgtctcttcattcagttgctgaagatctaataagag |
7915359 |
T |
|
| Q |
208 |
attggtgatctcttccatttcaaccttgattgcttcaacttcttggaagaattgagagaggttagggtcttgtgttgggttgaggttccctagttcaagg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7915360 |
attggtgatctcttccatttcaaccttgattgcttcaacttcttggaagaattgagagaggttagggtcttgtgttgggttgaggttccctagttcaagg |
7915459 |
T |
|
| Q |
308 |
tcaacatcttcaaaatctttctgtgcctgtttcttcaaatccacataacttaggaatgattttgtcatcaagtcattcatctttgcaatgtttattcaaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7915460 |
tcaacatcttcaaaatctttctgtgcctgtttcttcaaatccacataacttaggaacgattttgtcatcaagtcattcatctttgcaatgtttattcaaa |
7915559 |
T |
|
| Q |
408 |
acccaccttcaaaaacagcaaaacc |
432 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
7915560 |
acccaccttcaaaaacagcaaaacc |
7915584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 9 - 395
Target Start/End: Complemental strand, 31239555 - 31239169
Alignment:
| Q |
9 |
ttccttctttgtagcattctgatatgcttcgattcgcaatgttcgatttttgaagagcctctaacctagccttgataatatttgccttgcggagcacggc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| |||||||| ||||| |||||||| |||||||| |
|
|
| T |
31239555 |
ttccttctttgtagcattctgatatgcttcgattcgcaatgtttgatttctcaagagcctctaaccttgccttgattatattcgccttgcgcagcacggc |
31239456 |
T |
|
| Q |
109 |
aaccatatcggaatccattcgatctcttaacccgcgaagaactttcgcactgtgagtggattttgtctcttcattcagttgctgaagatctaataagaga |
208 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31239455 |
aaccatatcggaatccattcggtctcttaacccgcgaagaactttcgcaatgtgagtggattttgtctcttcattcagttgctgaagatctaataagaga |
31239356 |
T |
|
| Q |
209 |
ttggtgatctcttccatttcaaccttgattgcttcaacttcttggaagaattgagagaggttagggtcttgtgttgggttgaggttccctagttcaaggt |
308 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31239355 |
ttggtgatctcttccatttcaaccttaattgcttcaacttgttggaagaattgagagaggttagggtcttgtgtagggttgaggttccctagttcaaggt |
31239256 |
T |
|
| Q |
309 |
caacatcttcaaaatctttctgtgcctgtttcttcaaatccacataacttaggaatgattttgtcatcaagtcattcatctttgcaa |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
31239255 |
caacatcttcaaaatctttctgtgcctgtttcttcaattccacatgacttaggaacgattttgtcatcaagttattcatctttgcaa |
31239169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University