View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4863_high_1_N (Length: 922)
Name: NF4863_high_1_N
Description: NF4863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4863_high_1_N |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 503; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 381 - 922
Target Start/End: Complemental strand, 664013 - 663467
Alignment:
| Q |
381 |
atctacgctgtattaattagatttgaagtatgaacacctgatacaatatggacattgacatgttgacactgatgataatttgagaacatggcatatttca |
480 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
664013 |
atctacgttgtattaattagatttgaagtatgaacacctgatacaatatggacattgacatgttgacactgatgataatttgagaacatggcatatttca |
663914 |
T |
|
| Q |
481 |
atgtaaccacatgtgttagtgttgtgtt-----agtgttagacacacctttgattagaagtgtcgattctaacaccatttataatttgagaaaaagacat |
575 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
663913 |
atgtaaccacatgtgttagtgttgtgttgtgttagtgttagacacacctttgattagaagtgtcgattctaacaccatttataatttgagaaaaagacat |
663814 |
T |
|
| Q |
576 |
atttcaatgaaattacatgtgtcggtgttagatacttacatgcattgtacacttggcacacctttgataagaagtgttggtgctacaaagattttatata |
675 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
663813 |
atttcaatgaaattacatgtgtcggtgttagatacttacatgcattgtacacttggcacacctttgataagaagtgttggtgctacaaagattatatata |
663714 |
T |
|
| Q |
676 |
cgaacagtttttatggtttatgatttgcttatgtgaaattttgcctcttttgatatcagaggaagcgaggatttgtgaatggagttcgcataataatgca |
775 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
663713 |
tgaacaatttttatggtttatgatttgcttatgtgaaattttgcctcttttgatatcagaggaagcgaggatttgtgaatggagttcgcataataatgca |
663614 |
T |
|
| Q |
776 |
gtttttgatgtcaattggattaaggtagccttcaagttttgcaattatatgttcattaactttataaataggtttttgttaatattttgattgattgtag |
875 |
Q |
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| T |
663613 |
gtttttgatgtcaattggattaaggtagccttcaagttttgcaattatatgttcattaactttataaataggtttttgttaatattttgatcgattgtag |
663514 |
T |
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| Q |
876 |
tcagcctgaattgtttgttttgttagtgtcttaaattggtttacatt |
922 |
Q |
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| T |
663513 |
tcagcctgaattgtttattttgttagtgtcttaaattggtttacatt |
663467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 555 - 922
Target Start/End: Original strand, 908100 - 908467
Alignment:
| Q |
555 |
tataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttagatacttacatgcattgtacacttggcacacctttgataagaagtgttg |
654 |
Q |
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|||||||||||||| || |||||||||||| | |||||| ||||||||||||| ||||||||| || | ||||||||||||||||||||||| ||||||| |
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| T |
908100 |
tataatttgagaaatagtcatatttcaatgtacttacatttgtcggtgttagacacttacatgtatcggacacttggcacacctttgataagtagtgttg |
908199 |
T |
|
| Q |
655 |
gtgctacaaagattttatatacgaacagtttttatggtttatgatttgcttatgtgaaattttgcctcttttgatatcagaggaagcgaggatttgtgaa |
754 |
Q |
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|||||||||||||| |||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| ||||||||| |
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| T |
908200 |
gtgctacaaagattatatatatcaacaaattttatggtttatgatttacttatgtgaaattttgcctcttttgataccagagaaagcgagaatttgtgaa |
908299 |
T |
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| Q |
755 |
tggagttcgcataataatgcagtttttgatgtcaattggattaaggtagccttcaagttttgcaattatatgttcattaactttataaataggtttttgt |
854 |
Q |
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||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
908300 |
tggagtttgcataataatgcagtttttgacgtcaattggattaaggtagccttcattttttgcaattatatgttcattaaatttacaaataggtttttgt |
908399 |
T |
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| Q |
855 |
taatattttgattgattgtagtcagcctgaattgtttgttttgttagtgtcttaaattggtttacatt |
922 |
Q |
| |
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|||| ||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
908400 |
taattttttgattgattgtaattagcctgaattgtttattttgttagtgtcttaaattggtttacatt |
908467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 664382 - 664194
Alignment:
| Q |
14 |
gttacagttcgaaaaagacctaattacgatggatggtttcacggattcttagatgttggagctgtagctactcagcataacggtgaagacgttgttcctc |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
664382 |
gttacagttcgaaaaagacctaattacgatggatggtttcacggattcttagatgttggagctgtagctactcagcataacggtgaagacgttgttcctc |
664283 |
T |
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| Q |
114 |
ttgctctttcgttcgctaaggtgtgaaagattcgattttgattatacccttttgtttttatgcagaaaatatcatgtgggtcacccttg |
202 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
664282 |
ttgcgctttcgttcgctaaggtttgaaagattcgattttgattatacccttttgtttttatgcagaaaatatcatgcgggtcacccttg |
664194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 229 - 344
Target Start/End: Complemental strand, 664165 - 664050
Alignment:
| Q |
229 |
gtgcagacttcgaaattttgtcatattcttgctttgtctaatgaggagggatatgttagcttttttgatactcgtcgaaaatttgcggtgcctcagtgtc |
328 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
664165 |
gtgcagacttcgaaattttgtcatattcttgctttgtctaatgaggagggatatgttagcttttttgatactcgtcgaaaatttgcggtgcctcagtgtc |
664066 |
T |
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| Q |
329 |
tagaaagaaatgcagg |
344 |
Q |
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|||||||||||||||| |
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| T |
664065 |
tagaaagaaatgcagg |
664050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 242 - 344
Target Start/End: Original strand, 907869 - 907971
Alignment:
| Q |
242 |
aattttgtcatattcttgctttgtctaatgaggagggatatgttagcttttttgatactcgtcgaaaatttgcggtgcctcagtgtctagaaagaaatgc |
341 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||| | |||||| |||||||||||||||||| |
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| T |
907869 |
aattttgtcatattcttgctttgtctaatgaggagggatatgttagctttttcgatagtcgttgaaaattcgaagtgcctttgtgtctagaaagaaatgc |
907968 |
T |
|
| Q |
342 |
agg |
344 |
Q |
| |
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||| |
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| T |
907969 |
agg |
907971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000009; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 450 - 513
Target Start/End: Complemental strand, 44172944 - 44172881
Alignment:
| Q |
450 |
tgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttagtgt |
513 |
Q |
| |
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|||| |||||||||||| ||| |||| |||||||||| |||||||||| |||||||||| |||| |
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| T |
44172944 |
tgataataatttgagaaaatgacataattcaatgtaatcacatgtgtttgtgttgtgttggtgt |
44172881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 446 - 520
Target Start/End: Complemental strand, 36314685 - 36314611
Alignment:
| Q |
446 |
acactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttagtgttagacac |
520 |
Q |
| |
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| T |
36314685 |
acactcataataatttgagaaaatgacatatttcaatgtaatcatatgtgttggtgttgtcttggtgttggacac |
36314611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 430 - 496
Target Start/End: Complemental strand, 38134480 - 38134414
Alignment:
| Q |
430 |
ggacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgt |
496 |
Q |
| |
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|||||| ||||||||||||| ||| |||||||||||| ||| |||| |||||||||| || |||||| |
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| T |
38134480 |
ggacatggacatgttgacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgt |
38134414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 556 - 607
Target Start/End: Complemental strand, 44605188 - 44605137
Alignment:
| Q |
556 |
ataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttaga |
607 |
Q |
| |
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|||||||||||||| ||||| ||||||| |||||||||||||||||||||| |
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| T |
44605188 |
ataatttgagaaaataacataattcaatgtaattacatgtgtcggtgttaga |
44605137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 434 - 507
Target Start/End: Original strand, 16315862 - 16315935
Alignment:
| Q |
434 |
attgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgt |
507 |
Q |
| |
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|||||||||||||||||||| |||||||||| | ||| ||| || ||||||||||||||| | ||||||||| |
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| T |
16315862 |
attgacatgttgacactgataataatttgaggaaatgatataattgaatgtaaccacatgtatctgtgttgtgt |
16315935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 445 - 513
Target Start/End: Original strand, 8039206 - 8039274
Alignment:
| Q |
445 |
gacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttagtgt |
513 |
Q |
| |
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|||||||||||||||||||||| ||||||| |||||||||| || | |||| ||||||||| ||||| |
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| T |
8039206 |
gacactgatgataatttgagaaaatggcatgattcaatgtaatcataggtgtcggtgttgtgtcagtgt |
8039274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 445 - 507
Target Start/End: Complemental strand, 18513300 - 18513238
Alignment:
| Q |
445 |
gacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgt |
507 |
Q |
| |
|
||||| ||| |||||||||||| ||| |||| |||||||||| || |||||| |||||||||| |
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| T |
18513300 |
gacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgttgtgt |
18513238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 486
Target Start/End: Complemental strand, 5654658 - 5654609
Alignment:
| Q |
437 |
gacatgttgacactgatgataatttgagaacatggcatatttcaatgtaa |
486 |
Q |
| |
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||||||| ||||||||| |||||||||||| ||| |||| |||||||||| |
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| T |
5654658 |
gacatgtcgacactgataataatttgagaaaatgacataattcaatgtaa |
5654609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 431 - 496
Target Start/End: Original strand, 6501481 - 6501546
Alignment:
| Q |
431 |
gacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgt |
496 |
Q |
| |
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|||||||||| |||||||||| | ||||||||||| ||| ||| || ||||||||||||||||| |
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|
| T |
6501481 |
gacattgacacgttgacactggtaataatttgagagaatgaaataattaaatgtaaccacatgtgt |
6501546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 513
Target Start/End: Original strand, 43328458 - 43328535
Alignment:
| Q |
436 |
tgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttagtgt |
513 |
Q |
| |
|
||||| ||||||||| || |||||||||||| ||| ||| || ||||||||||||||||| | ||| ||||| |||| |
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|
| T |
43328458 |
tgacacgttgacacttataataatttgagaaaatgaaataatttaatgtaaccacatgtgtcattgtcgtgttggtgt |
43328535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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