View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4863_high_2 (Length: 767)

Name: NF4863_high_2
Description: NF4863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4863_high_2
NF4863_high_2
[»] chr8 (2 HSPs)
chr8 (15-650)||(41750937-41751570)
chr8 (644-767)||(41750952-41751075)


Alignment Details
Target: chr8 (Bit Score: 565; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 15 - 650
Target Start/End: Complemental strand, 41751570 - 41750937
Alignment:
Q  15 atttggcccatcaattgtatataaggtatattgtg--cccttaaaagaaaggtacattgtgggcacacaattttccatttgtttatgtcttgtaccataa 112  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41751570 atttggcccatcaattgtatataaggtatattgtgtgcccttaaaagaaaggtacattgtgggcacacaattttccatttgtttatgtcttgtaccataa 41751471  T
Q  113 gcaatatagttgcgtggcattttgaatttgcccctattgtgtattatgaaatatgaatcctcaaatctctatttatgtatttttaattgtctttttcata 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41751470 gcaatatagttgcgtggcattttgaatttgcccctattgtgtattatgaaatatgaatcctcaa-tctctatttatgtatttttaattgtctttttcata 41751372  T
Q  213 attttaaagagcatacggtgacatgcactcacatgttaaatgagaaattacaaatacaaatttacgcatcttcatatcaaatgtcttacttcttgtgtta 312  Q
    |||||||||||||  ||||||||  |||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  41751371 attttaaagagcacgcggtgacacacactcatatgttaagtgagaaattacaaatacaaatttgcgcatcttcatatcaaatgtcttactccttgtgtta 41751272  T
Q  313 acggagcattgcttcaattcggcaaaccatctcggtctatcaagataataataaacgtacgaatatcatgtgattcaacagatagcagagcaagcaagat 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41751271 acggagcattgcttcaattcggcaaaccatctcggtctatcaagatagtaataaacgtacgaatatcatgtgattcaacagatagcagagcaagcaagat 41751172  T
Q  413 acttttcttgttaatttgcatgcggagaaattatattatgagtatcgttggggtagatgtggccttttttgtcgctagaaagaacatacgtttaatttgg 512  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41751171 acttttcttgttaatttgcatgcggagaa---atattatgagtatcgttggggtagatgtggccttttttgtcgctagaaagaacatacgtttaatttgg 41751075  T
Q  513 gacaaagttctgcgtaatgaattattgatattgattgtacatgtatgtacatgaatatgatattgaaatcaatgatgatgttaattaaatgcaaattaac 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41751074 gacaaagttctgcgtaatgaattattgatattgattgtacatgtatgtacatgaatatgatattgaaatcaatgatgatgttaattaaatgcaaattaac 41750975  T
Q  613 aagtaaaaatgcagagagttagggacatatacctaact 650  Q
    | ||||||||||||||||||||||||||||||||||||    
T  41750974 atgtaaaaatgcagagagttagggacatatacctaact 41750937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 644 - 767
Target Start/End: Original strand, 41750952 - 41751075
Alignment:
Q  644 cctaactctctgcatttttacttgttaatttgcatttaattaacatcatcattgatttcaatatcatattcatgtacatacatgtacaatcaatatcaat 743  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41750952 cctaactctctgcatttttacatgttaatttgcatttaattaacatcatcattgatttcaatatcatattcatgtacatacatgtacaatcaatatcaat 41751051  T
Q  744 aattcattacgcagaactttgtcc 767  Q
    ||||||||||||||||||||||||    
T  41751052 aattcattacgcagaactttgtcc 41751075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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