View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4863_high_3 (Length: 548)

Name: NF4863_high_3
Description: NF4863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4863_high_3
NF4863_high_3
[»] chr3 (15 HSPs)
chr3 (43-113)||(6483815-6483885)
chr3 (16-113)||(6801867-6801963)
chr3 (492-544)||(6800860-6800912)
chr3 (73-113)||(34924554-34924594)
chr3 (188-219)||(20874451-20874482)
chr3 (180-219)||(33306860-33306899)
chr3 (181-219)||(4534485-4534523)
chr3 (129-219)||(8933675-8933765)
chr3 (154-208)||(28842974-28843028)
chr3 (66-99)||(36101596-36101629)
chr3 (66-99)||(36139906-36139939)
chr3 (154-210)||(2070952-2071008)
chr3 (69-113)||(11253515-11253559)
chr3 (69-113)||(32064453-32064497)
chr3 (73-113)||(33883766-33883806)
[»] chr5 (12 HSPs)
chr5 (154-219)||(26516186-26516251)
chr5 (75-113)||(6593313-6593351)
chr5 (129-219)||(20982227-20982317)
chr5 (129-219)||(35135754-35135844)
chr5 (107-168)||(465893-465954)
chr5 (69-168)||(29116962-29117061)
chr5 (154-219)||(6773414-6773479)
chr5 (68-113)||(8985675-8985720)
chr5 (72-100)||(8089308-8089336)
chr5 (73-113)||(10125734-10125774)
chr5 (187-219)||(14257353-14257385)
chr5 (73-113)||(38104873-38104913)
[»] chr8 (22 HSPs)
chr8 (130-217)||(12972746-12972833)
chr8 (42-219)||(2364478-2364655)
chr8 (72-114)||(20672763-20672805)
chr8 (129-219)||(39392753-39392843)
chr8 (72-113)||(31862507-31862548)
chr8 (106-219)||(31884482-31884595)
chr8 (72-111)||(11183561-11183600)
chr8 (67-113)||(10075561-10075607)
chr8 (76-114)||(25872438-25872476)
chr8 (189-219)||(40888453-40888483)
chr8 (72-113)||(2458581-2458622)
chr8 (73-114)||(11745668-11745709)
chr8 (73-110)||(23996643-23996680)
chr8 (187-219)||(7008517-7008549)
chr8 (187-219)||(8194088-8194120)
chr8 (77-113)||(9541016-9541052)
chr8 (130-214)||(10727090-10727174)
chr8 (40-104)||(13459668-13459732)
chr8 (73-113)||(30277261-30277301)
chr8 (73-113)||(30389113-30389153)
chr8 (187-219)||(39866886-39866918)
chr8 (116-168)||(40598932-40598984)
[»] chr7 (18 HSPs)
chr7 (144-219)||(36598428-36598503)
chr7 (106-218)||(49060429-49060541)
chr7 (73-162)||(86969-87057)
chr7 (138-219)||(2223037-2223117)
chr7 (73-169)||(43250715-43250811)
chr7 (69-121)||(1710736-1710788)
chr7 (187-219)||(28702645-28702677)
chr7 (179-219)||(37497902-37497942)
chr7 (69-113)||(40428569-40428613)
chr7 (81-168)||(42656454-42656541)
chr7 (181-219)||(2221853-2221891)
chr7 (153-219)||(40371712-40371778)
chr7 (70-99)||(12792576-12792605)
chr7 (154-215)||(27389275-27389336)
chr7 (70-107)||(41394782-41394819)
chr7 (187-223)||(3501115-3501151)
chr7 (73-113)||(7521286-7521326)
chr7 (72-104)||(12234904-12234936)
[»] chr2 (13 HSPs)
chr2 (40-113)||(33192216-33192289)
chr2 (109-198)||(5133683-5133770)
chr2 (69-111)||(5781685-5781727)
chr2 (71-113)||(24141665-24141707)
chr2 (129-219)||(31461326-31461416)
chr2 (138-216)||(38239652-38239730)
chr2 (154-219)||(11393483-11393548)
chr2 (154-219)||(11410144-11410209)
chr2 (73-118)||(35993396-35993441)
chr2 (56-100)||(24098129-24098173)
chr2 (73-113)||(35379032-35379072)
chr2 (187-219)||(43456835-43456867)
chr2 (187-219)||(43635250-43635282)
[»] chr1 (18 HSPs)
chr1 (73-113)||(25479595-25479635)
chr1 (41-119)||(19092368-19092445)
chr1 (154-219)||(29794039-29794104)
chr1 (69-122)||(33975575-33975628)
chr1 (69-113)||(7472325-7472369)
chr1 (40-103)||(11639399-11639462)
chr1 (138-213)||(23895230-23895305)
chr1 (154-217)||(44236648-44236711)
chr1 (73-114)||(4700082-4700123)
chr1 (73-102)||(10199424-10199453)
chr1 (72-113)||(39270440-39270481)
chr1 (73-113)||(6279413-6279453)
chr1 (72-100)||(6292520-6292548)
chr1 (73-109)||(15361058-15361094)
chr1 (73-113)||(26461957-26461997)
chr1 (72-100)||(31517755-31517783)
chr1 (109-169)||(36151577-36151637)
chr1 (117-213)||(48748663-48748757)
[»] scaffold0590 (1 HSPs)
scaffold0590 (129-219)||(1166-1256)
[»] scaffold0275 (1 HSPs)
scaffold0275 (129-219)||(2719-2809)
[»] chr4 (16 HSPs)
chr4 (59-125)||(19429711-19429777)
chr4 (40-113)||(28614791-28614864)
chr4 (179-219)||(2726403-2726443)
chr4 (70-109)||(29601021-29601060)
chr4 (106-169)||(52326178-52326241)
chr4 (154-219)||(7749199-7749264)
chr4 (71-104)||(17769655-17769688)
chr4 (158-219)||(24193473-24193534)
chr4 (72-113)||(30207586-30207627)
chr4 (67-114)||(2977986-2978034)
chr4 (73-146)||(5131266-5131341)
chr4 (69-113)||(11158369-11158413)
chr4 (69-113)||(11264315-11264359)
chr4 (74-114)||(39063664-39063704)
chr4 (187-219)||(41162203-41162235)
chr4 (73-101)||(54575616-54575644)
[»] scaffold0015 (1 HSPs)
scaffold0015 (170-219)||(69075-69124)
[»] chr6 (14 HSPs)
chr6 (109-214)||(8349736-8349841)
chr6 (141-218)||(10452464-10452541)
chr6 (158-219)||(32975866-32975927)
chr6 (72-102)||(323597-323627)
chr6 (75-113)||(7148680-7148718)
chr6 (106-168)||(32206089-32206151)
chr6 (154-219)||(3155064-3155129)
chr6 (154-219)||(4003717-4003782)
chr6 (107-208)||(32386169-32386270)
chr6 (55-100)||(32386561-32386606)
chr6 (73-113)||(281864-281904)
chr6 (73-113)||(6647401-6647441)
chr6 (187-219)||(9041567-9041599)
chr6 (69-97)||(27894076-27894104)
[»] scaffold0159 (1 HSPs)
scaffold0159 (69-111)||(27017-27059)
[»] scaffold0110 (1 HSPs)
scaffold0110 (137-219)||(34012-34094)
[»] scaffold0003 (1 HSPs)
scaffold0003 (72-113)||(306340-306381)


Alignment Details
Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 6483885 - 6483815
Alignment:
Q  43 atgaaaacagtctataacatagccacaaactgttttcagcttattttcataagctctctagggtagcttat 113  Q
    |||||||| |||||| |||| |||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  6483885 atgaaaaccgtctatgacatggccacaaactgttttcagcttattttaataagctctctaggatagcttat 6483815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 6801963 - 6801867
Alignment:
Q  16 aacttctgaaaccatttgttagaccttatgaaaacagtctataacatagccacaaactgttttcagcttattttcataagctctctagggtagcttat 113  Q
    |||||||||||||||| || | | |||||||||||||||| | |||| ||||||||||| || || ||||||||| ||||||||||||| ||||||||    
T  6801963 aacttctgaaaccatt-gtcacagcttatgaaaacagtctgtgacatggccacaaactgattccaacttattttcgtaagctctctaggatagcttat 6801867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 492 - 544
Target Start/End: Complemental strand, 6800912 - 6800860
Alignment:
Q  492 taacagatatggcaacggatattgtaagcagtgatgctgcaatcataacacca 544  Q
    ||||||||||||||| ||| ||||||||||||||| |||||||||||||||||    
T  6800912 taacagatatggcaaaggaaattgtaagcagtgatactgcaatcataacacca 6800860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 34924554 - 34924594
Alignment:
Q  73 tgttttcagcttattttcataagctctctagggtagcttat 113  Q
    |||||||||||||||||||||||||||||| | ||||||||    
T  34924554 tgttttcagcttattttcataagctctctaagatagcttat 34924594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 219
Target Start/End: Original strand, 20874451 - 20874482
Alignment:
Q  188 ttatgctataagtgcttaattaagttgtttat 219  Q
    ||||||||||||||||||||||||||||||||    
T  20874451 ttatgctataagtgcttaattaagttgtttat 20874482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 33306860 - 33306899
Alignment:
Q  180 ataagctcttatgctataagtgcttaattaagttgtttat 219  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  33306860 ataagctcttatgctacaagtgcttaattaagctgtttat 33306899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 4534485 - 4534523
Alignment:
Q  181 taagctcttatgctataagtgcttaattaagttgtttat 219  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  4534485 taagcacttatactataagtgcttaattaagttgtttat 4534523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 219
Target Start/End: Complemental strand, 8933765 - 8933675
Alignment:
Q  129 ctttattccatcttttgtcattgacatagcttatacataaacacaaataggataagctcttatgctataagtgcttaattaagttgtttat 219  Q
    ||||||| ||| |||||||||  | ||| |||||||||||  ||| ||| || ||||   ||||| |||||||||||||||||||||||||    
T  8933765 ctttattacattttttgtcatcaaaataacttatacataactacatatatgacaagcatctatgcaataagtgcttaattaagttgtttat 8933675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 28842974 - 28843028
Alignment:
Q  154 atagcttatacataaacacaaataggataagctcttatgctataagtgcttaatt 208  Q
    ||||||||||||||| |||  ||| ||||||| |||||| |||||||||||||||    
T  28842974 atagcttatacataagcacttatatgataagcgcttatgatataagtgcttaatt 28843028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 36101629 - 36101596
Alignment:
Q  66 cacaaactgttttcagcttattttcataagctct 99  Q
    ||||| ||||||||||||||||||||||||||||    
T  36101629 cacaagctgttttcagcttattttcataagctct 36101596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 36139939 - 36139906
Alignment:
Q  66 cacaaactgttttcagcttattttcataagctct 99  Q
    ||||| ||||||||||||||||||||||||||||    
T  36139939 cacaagctgttttcagcttattttcataagctct 36139906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 2071008 - 2070952
Alignment:
Q  154 atagcttatacataaacacaaataggataagctcttatgctataagtgcttaattaa 210  Q
    ||||||||||||| |||||  ||  ||||||  ||||||||||||||||||||||||    
T  2071008 atagcttatacattaacacttatgtgataagtacttatgctataagtgcttaattaa 2070952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 11253559 - 11253515
Alignment:
Q  69 aaactgttttcagcttattttcataagctctctagggtagcttat 113  Q
    |||||||||||||| ||||| | ||||||||||||| ||||||||    
T  11253559 aaactgttttcagcctatttccctaagctctctaggatagcttat 11253515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 32064497 - 32064453
Alignment:
Q  69 aaactgttttcagcttattttcataagctctctagggtagcttat 113  Q
    |||||||||||| |||||||||||||||||| |||| ||| ||||    
T  32064497 aaactgttttcaacttattttcataagctctttaggatagtttat 32064453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 33883766 - 33883806
Alignment:
Q  73 tgttttcagcttattttcataagctctctagggtagcttat 113  Q
    ||||||||||||||||||||||| |||||| | ||||||||    
T  33883766 tgttttcagcttattttcataagttctctaagatagcttat 33883806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 26516251 - 26516186
Alignment:
Q  154 atagcttatacataaacacaaataggataagctcttatgctataagtgcttaattaagttgtttat 219  Q
    ||||||||||||||| |||  ||| ||||||| ||||||||||||| |||||||||||||||||||    
T  26516251 atagcttatacataagcacttatatgataagcgcttatgctataagcgcttaattaagttgtttat 26516186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 113
Target Start/End: Complemental strand, 6593351 - 6593313
Alignment:
Q  75 ttttcagcttattttcataagctctctagggtagcttat 113  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  6593351 ttttcagcttattttcataagctctctaaggtagcttat 6593313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 219
Target Start/End: Original strand, 20982227 - 20982317
Alignment:
Q  129 ctttattccatcttttgtcattgacatagcttatacataaacacaaataggataagctcttatgctataagtgcttaattaagttgtttat 219  Q
    |||||||  ||| ||||| || || ||||||||||||||| |||  ||| ||||||| |||||||||||||  |||||| |||||||||||    
T  20982227 ctttattttatcctttgttatagaaatagcttatacataagcacttatatgataagcacttatgctataagcacttaatgaagttgtttat 20982317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 219
Target Start/End: Original strand, 35135754 - 35135844
Alignment:
Q  129 ctttattccatcttttgtcattgacatagcttatacataaacacaaataggataagctcttatgctataagtgcttaattaagttgtttat 219  Q
    |||||||  ||||||||| || || ||| |||||||||||||||  ||| | ||||| |||||||||| |||| | |||||||||||||||    
T  35135754 ctttattttatcttttgttatagaaatatcttatacataaacacttatatgttaagcacttatgctatgagtgttgaattaagttgtttat 35135844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 465954 - 465893
Alignment:
Q  107 agcttatacaaaaacaattcatctttattccatcttttgtcattgacatagcttatacataa 168  Q
    ||||||||||||||||||| | |||||||  |||||||||||| || |||||||||| ||||    
T  465954 agcttatacaaaaacaatttaactttattttatcttttgtcatagaaatagcttatatataa 465893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 29116962 - 29117061
Alignment:
Q  69 aaactgttttcagcttattttcataagctctctagggtagcttatacaaaaacaattcatctttattccatcttttgtcattgacatagcttatacataa 168  Q
    |||||||||||||||||||| |||||||| |  ||| |||||||||| |||||| ||   |||||||  ||||||||| || || ||| | |||||||||    
T  29116962 aaactgttttcagcttatttgcataagcttttcaggatagcttatacgaaaacagtttgactttattttatcttttgttatagaaataacatatacataa 29117061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 6773414 - 6773479
Alignment:
Q  154 atagcttatacataaacacaaataggataagctcttatgctataagtgcttaattaagttgtttat 219  Q
    ||||||||||||||||| |   || || || ||||||||||| ||| |||||||||||||||||||    
T  6773414 atagcttatacataaactcttgtacgacaatctcttatgctagaagcgcttaattaagttgtttat 6773479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 8985720 - 8985675
Alignment:
Q  68 caaactgttttcagcttattttcataagctctctagggtagcttat 113  Q
    ||||||||||||||||| ||| |||||||||| |||| ||||||||    
T  8985720 caaactgttttcagcttctttccataagctctataggatagcttat 8985675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 72 - 100
Target Start/End: Complemental strand, 8089336 - 8089308
Alignment:
Q  72 ctgttttcagcttattttcataagctctc 100  Q
    |||||||||||||||||||||||||||||    
T  8089336 ctgttttcagcttattttcataagctctc 8089308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 10125734 - 10125774
Alignment:
Q  73 tgttttcagcttattttcataagctctctagggtagcttat 113  Q
    |||||||||||||||||||||||||||| | |||| |||||    
T  10125734 tgttttcagcttattttcataagctctccatggtaacttat 10125774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 14257385 - 14257353
Alignment:
Q  187 cttatgctataagtgcttaattaagttgtttat 219  Q
    |||||| ||||||||||||||||||||||||||    
T  14257385 cttatgttataagtgcttaattaagttgtttat 14257353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 38104873 - 38104913
Alignment:
Q  73 tgttttcagcttattttcataagctctctagggtagcttat 113  Q
    |||||||||||||||| ||||||||||||| | ||||||||    
T  38104873 tgttttcagcttatttccataagctctctaagatagcttat 38104913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 217
Target Start/End: Complemental strand, 12972833 - 12972746
Alignment:
Q  130 tttattccatcttttgtcattgacatagcttatacataaacacaaataggataagctcttatgctataagtgcttaattaagttgttt 217  Q
    |||||| |||||| ||| ||||| ||||||||||||||| |||  ||| |||||   ||||||||||||| |||||||||||||||||    
T  12972833 tttatttcatcttctgttattgaaatagcttatacataagcacttatatgataaatgcttatgctataagcgcttaattaagttgttt 12972746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 219
Target Start/End: Original strand, 2364478 - 2364655
Alignment:
Q  42 tatgaaaacagtctataacatagccacaaactgttttcagcttattttcataagctctctagggtagcttatacaaaaacaattcatctttattccatct 141  Q
    |||||||||||| ||| ||||  ||| ||| |||||||||||| |||  | |||||||||| | ||||||||||||||  ||||   |||||||  ||||    
T  2364478 tatgaaaacagtttatgacatgtccataaagtgttttcagcttttttcgacaagctctctaagatagcttatacaaaagaaatttgactttattttatct 2364577  T
Q  142 tttgtcattgacatagcttatacataaacacaaataggataagctcttatgctataagtgcttaattaagttgtttat 219  Q
    ||||  ||  | ||||| |||||||||| |   ||| ||||| | ||||||||||||| |||||| || |||||||||    
T  2364578 tttgctataaaaatagcgtatacataaatagttatatgataaacacttatgctataagcgcttaactatgttgtttat 2364655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 20672805 - 20672763
Alignment:
Q  72 ctgttttcagcttattttcataagctctctagggtagcttata 114  Q
    ||||||||||||||||||||||||||||| ||| |||||||||    
T  20672805 ctgttttcagcttattttcataagctctccaggatagcttata 20672763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 219
Target Start/End: Original strand, 39392753 - 39392843
Alignment:
Q  129 ctttattccatcttttgtcattgacatagcttatacataaacacaaataggataagctcttatgctataagtgcttaattaagttgtttat 219  Q
    |||||||  ||||||||| || || |||| |||||||||  |||  ||| ||||||| |||||||||||| |||||||||||||| |||||    
T  39392753 ctttattttatcttttgttatagaaatagtttatacatagccacttatatgataagcacttatgctataaatgcttaattaagttatttat 39392843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 72 - 113
Target Start/End: Complemental strand, 31862548 - 31862507
Alignment:
Q  72 ctgttttcagcttattttcataagctctctagggtagcttat 113  Q
    ||||||||||||||||||||||||||||||||| || |||||    
T  31862548 ctgttttcagcttattttcataagctctctaggataacttat 31862507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 106 - 219
Target Start/End: Complemental strand, 31884595 - 31884482
Alignment:
Q  106 tagcttatacaaaaacaattcatctttattccatcttttgtcattgacatagcttatacataaacacaaataggataagctcttatgctataagtgctta 205  Q
    |||||||||  |||||||||||  || |||  || |||||| || || ||| ||||||||||  |||   || ||||||| |||||||||||||||||||    
T  31884595 tagcttatatgaaaacaattcaatttgattttatattttgttatagaaataacttatacatatgcacttgtatgataagcgcttatgctataagtgctta 31884496  T
Q  206 attaagttgtttat 219  Q
    ||| ||||||||||    
T  31884495 attgagttgtttat 31884482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 111
Target Start/End: Complemental strand, 11183600 - 11183561
Alignment:
Q  72 ctgttttcagcttattttcataagctctctagggtagctt 111  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  11183600 ctgttttcagcttatttccataagctctccagggtagctt 11183561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 10075561 - 10075607
Alignment:
Q  67 acaaactgttttcagcttattttcataagctctctagggtagcttat 113  Q
    |||| ||| ||| ||||||||||||||||||||||||| ||||||||    
T  10075561 acaagctgcttttagcttattttcataagctctctaggatagcttat 10075607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 25872438 - 25872476
Alignment:
Q  76 tttcagcttattttcataagctctctagggtagcttata 114  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  25872438 tttcagcttattttcataagctcactaggatagcttata 25872476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 189 - 219
Target Start/End: Complemental strand, 40888483 - 40888453
Alignment:
Q  189 tatgctataagtgcttaattaagttgtttat 219  Q
    |||||||||||||||||||||||||||||||    
T  40888483 tatgctataagtgcttaattaagttgtttat 40888453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 2458581 - 2458622
Alignment:
Q  72 ctgttttcagcttattttcataagctctctagggtagcttat 113  Q
    |||||||||| |||||| ||||||||||||||| ||||||||    
T  2458581 ctgttttcagtttatttccataagctctctaggatagcttat 2458622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 11745668 - 11745709
Alignment:
Q  73 tgttttcagcttattttcataagctctctagggtagcttata 114  Q
    ||||||||||||| |||||||||||| ||||| |||||||||    
T  11745668 tgttttcagcttagtttcataagctcactaggatagcttata 11745709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 110
Target Start/End: Original strand, 23996643 - 23996680
Alignment:
Q  73 tgttttcagcttattttcataagctctctagggtagct 110  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  23996643 tgtttttagcttattttcataagctctctaggatagct 23996680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 7008549 - 7008517
Alignment:
Q  187 cttatgctataagtgcttaattaagttgtttat 219  Q
    ||||||||||||| |||||||||||||||||||    
T  7008549 cttatgctataagcgcttaattaagttgtttat 7008517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 8194088 - 8194120
Alignment:
Q  187 cttatgctataagtgcttaattaagttgtttat 219  Q
    ||||||||||||| |||||||||||||||||||    
T  8194088 cttatgctataagggcttaattaagttgtttat 8194120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 113
Target Start/End: Original strand, 9541016 - 9541052
Alignment:
Q  77 ttcagcttattttcataagctctctagggtagcttat 113  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  9541016 ttcagcttattttcaaaagctctctaggatagcttat 9541052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 130 - 214
Target Start/End: Complemental strand, 10727174 - 10727090
Alignment:
Q  130 tttattccatcttttgtcattgacatagcttatacataaacacaaataggataagctcttatgctataagtgcttaattaagttg 214  Q
    |||||| |||||||||  || || ||||||||| ||||| |||  ||| ||| | | |||||||||||| |||||||||||||||    
T  10727174 tttatttcatcttttgctatagaaatagcttatgcataagcacttatatgatgaacacttatgctataaatgcttaattaagttg 10727090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 13459732 - 13459668
Alignment:
Q  40 cttatgaaaacagtctataacatagccacaaactgttttcagcttattttcataagctctctagg 104  Q
    |||||||||||||  ||| ||||   || |||||||||||||| |||||||||||||||| ||||    
T  13459732 cttatgaaaacagcttatgacattttcataaactgttttcagcctattttcataagctctgtagg 13459668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 30277261 - 30277301
Alignment:
Q  73 tgttttcagcttattttcataagctctctagggtagcttat 113  Q
    |||||||||||||||| ||||| ||||||||| ||||||||    
T  30277261 tgttttcagcttatttccataaactctctaggatagcttat 30277301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 30389153 - 30389113
Alignment:
Q  73 tgttttcagcttattttcataagctctctagggtagcttat 113  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  30389153 tgttttcagcttattttcataagttctctaggaaagcttat 30389113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 39866886 - 39866918
Alignment:
Q  187 cttatgctataagtgcttaattaagttgtttat 219  Q
    ||||||||||| |||||||||||||||||||||    
T  39866886 cttatgctataggtgcttaattaagttgtttat 39866918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 40598932 - 40598984
Alignment:
Q  116 aaaaacaattcatctttattccatcttttgtcattgacatagcttatacataa 168  Q
    |||||||||| | ||||||||||||||||||  | || |||||||||||||||    
T  40598932 aaaaacaatttaactttattccatcttttgttttagaaatagcttatacataa 40598984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 219
Target Start/End: Original strand, 36598428 - 36598503
Alignment:
Q  144 tgtcattgacatagcttatacataaacacaaataggataagctcttatgctataagtgcttaattaagttgtttat 219  Q
    |||||| || ||||||||||||||||||| |||| ||||| | |||||||  ||||| ||||||||||||||||||    
T  36598428 tgtcatagaaatagcttatacataaacactaatatgataaacacttatgccgtaagttcttaattaagttgtttat 36598503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 218
Target Start/End: Complemental strand, 49060541 - 49060429
Alignment:
Q  106 tagcttatacaaaaacaattcatctttattccatcttttgtcattgacatagcttatacataaacacaaataggataagctcttatgctataagtgctta 205  Q
    ||||||||| ||||| ||||   |||||||  || |||||| || || |||||||||||||||| ||  ||| |||||||  |||| |||||||||||||    
T  49060541 tagcttatataaaaataatttgactttattttattttttgttatagaaatagcttatacataaatacttatatgataagccattatactataagtgctta 49060442  T
Q  206 attaagttgttta 218  Q
    |||||| ||||||    
T  49060441 attaagctgttta 49060429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 73 - 162
Target Start/End: Complemental strand, 87057 - 86969
Alignment:
Q  73 tgttttcagcttattttcataagctctctagggtagcttatacaaaaacaattcatctttattccatcttttgtcattgacatagcttat 162  Q
    ||||||||||| |||| |||||| |||| | |  |||||| ||||||||||||||  ||||||| |||||||||||| || |||||||||    
T  87057 tgttttcagct-atttccataagttctccaagaaagcttacacaaaaacaattcaattttattctatcttttgtcatagaaatagcttat 86969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 2223117 - 2223037
Alignment:
Q  138 atcttttgtcattgacatagcttatacataaacacaaataggataagctcttatgctataagtgcttaattaagttgtttat 219  Q
    ||||||||| || || |||||||||||||||||||  ||| |||||| | ||||||||||| ||| ||||||| ||||||||    
T  2223117 atcttttgttatagaaatagcttatacataaacacttatacgataagat-ttatgctataaatgcctaattaaattgtttat 2223037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 73 - 169
Target Start/End: Original strand, 43250715 - 43250811
Alignment:
Q  73 tgttttcagcttattttcataagctctctagggtagcttatac-aaaaacaattcatctttattccatcttttgtcattgacatagcttatacataaa 169  Q
    ||||||||| |||| ||||||||||||| |   |||||||||| |||||||||| | |||||||  |||||||||  | |||||||||||||||||||    
T  43250715 tgttttcagtttatattcataagctctccaaaatagcttatacgaaaaacaattaa-ctttattttatcttttgttctagacatagcttatacataaa 43250811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 1710788 - 1710736
Alignment:
Q  69 aaactgttttcagcttattttcataagctctctagggtagcttatacaaaaac 121  Q
    |||||||||||||||||||| ||||| ||||||||  ||||||||| ||||||    
T  1710788 aaactgttttcagcttatttccataacctctctagaatagcttatataaaaac 1710736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 28702677 - 28702645
Alignment:
Q  187 cttatgctataagtgcttaattaagttgtttat 219  Q
    |||||||||||||||||||||||||||||||||    
T  28702677 cttatgctataagtgcttaattaagttgtttat 28702645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 37497902 - 37497942
Alignment:
Q  179 gataagctcttatgctataagtgcttaattaagttgtttat 219  Q
    ||||||| ||||| |||||||||||||||||||||||||||    
T  37497902 gataagcgcttatactataagtgcttaattaagttgtttat 37497942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 40428613 - 40428569
Alignment:
Q  69 aaactgttttcagcttattttcataagctctctagggtagcttat 113  Q
    |||||||||||||||||||| |||||||||| |||| ||||||||    
T  40428613 aaactgttttcagcttatttccataagctctttaggatagcttat 40428569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 168
Target Start/End: Complemental strand, 42656541 - 42656454
Alignment:
Q  81 gcttattttcataagctctctagggtagcttatacaaaaacaattcatctttattccatcttttgtcattgacatagcttatacataa 168  Q
    |||||||||||||||||||| | | |||||||||||||||  |||   |||||||  ||||||||| || || |||||||||| ||||    
T  42656541 gcttattttcataagctctccaagatagcttatacaaaaatgatttgactttattttatcttttgttatagaaatagcttatatataa 42656454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 2221891 - 2221853
Alignment:
Q  181 taagctcttatgctataagtgcttaattaagttgtttat 219  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  2221891 taagcgcttatgctataagtgtttaattaagttgtttat 2221853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 40371712 - 40371778
Alignment:
Q  153 catagcttatacataaacacaaataggataagctcttatgctataagtgcttaattaagttgtttat 219  Q
    ||||||| ||||||| ||||  ||| ||| ||| ||||||||||||||  |||||||||||||||||    
T  40371712 catagctaatacatacacacttatatgattagcgcttatgctataagtctttaattaagttgtttat 40371778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 99
Target Start/End: Original strand, 12792576 - 12792605
Alignment:
Q  70 aactgttttcagcttattttcataagctct 99  Q
    ||||||||||||||||||||||||||||||    
T  12792576 aactgttttcagcttattttcataagctct 12792605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 27389336 - 27389275
Alignment:
Q  154 atagcttatacataaacacaaataggataagctcttatgctataagtgcttaattaagttgt 215  Q
    |||||||||||||||||||  ||| ||||||| ||||||||| | | |||||| ||||||||    
T  27389336 atagcttatacataaacacttatatgataagcacttatgctacatgcgcttaactaagttgt 27389275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 41394782 - 41394819
Alignment:
Q  70 aactgttttcagcttattttcataagctctctagggta 107  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  41394782 aactgttttgagcttattttcataagctctctaaggta 41394819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 3501115 - 3501151
Alignment:
Q  187 cttatgctataagtgcttaattaagttgtttatattc 223  Q
    |||||| |||||||| |||||||||||||||||||||    
T  3501115 cttatgttataagtgtttaattaagttgtttatattc 3501151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 7521326 - 7521286
Alignment:
Q  73 tgttttcagcttattttcataagctctctagggtagcttat 113  Q
    ||||||||||||||||||| |||||||||||| ||| ||||    
T  7521326 tgttttcagcttattttcagaagctctctaggatagtttat 7521286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 12234904 - 12234936
Alignment:
Q  72 ctgttttcagcttattttcataagctctctagg 104  Q
    ||||||||||||||||| |||||||||||||||    
T  12234904 ctgttttcagcttatttccataagctctctagg 12234936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 33192289 - 33192216
Alignment:
Q  40 cttatgaaaacagtctataacatagccacaaactgttttcagcttattttcataagctctctagggtagcttat 113  Q
    |||||||||||||| ||| ||||| ||| || ||||||||||||||| || |||||||||| ||| ||||||||    
T  33192289 cttatgaaaacagtttatgacatatccataagctgttttcagcttatatttataagctctccaggatagcttat 33192216  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 198
Target Start/End: Complemental strand, 5133770 - 5133683
Alignment:
Q  109 cttatacaaaaacaattcatctttattccatcttttgtcattgacatagcttatacataaacacaaataggataagctcttatgctataa 198  Q
    |||||| ||||||| || |||||||||  ||||||||| || || |||||||||||||||   |||||| ||||||  ||||||||||||    
T  5133770 cttatataaaaacagtttatctttattttatcttttgttatagaaatagcttatacataa--gcaaatatgataagtgcttatgctataa 5133683  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 5781727 - 5781685
Alignment:
Q  69 aaactgttttcagcttattttcataagctctctagggtagctt 111  Q
    |||||||||||||||||||| ||||||||||||| | ||||||    
T  5781727 aaactgttttcagcttatttccataagctctctatgatagctt 5781685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 24141665 - 24141707
Alignment:
Q  71 actgttttcagcttattttcataagctctctagggtagcttat 113  Q
    |||||||||||||| |||||||||||||| |||| ||||||||    
T  24141665 actgttttcagcttgttttcataagctctataggatagcttat 24141707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 219
Target Start/End: Complemental strand, 31461416 - 31461326
Alignment:
Q  129 ctttattccatcttttgtcattgacatagcttatacataaacacaaataggataagctcttatgctataagtgcttaattaagttgtttat 219  Q
    |||||||  ||||||||| || || |||||||||| |||| |||  ||| ||||  |  |||||||| |||||||||||||||||||||||    
T  31461416 ctttattttatcttttgttatagaaatagcttatatataaccacttatatgatatacgtttatgctagaagtgcttaattaagttgtttat 31461326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 38239652 - 38239730
Alignment:
Q  138 atcttttgtcattgacatagcttatacataaacacaaataggataagctcttatgctataagtgcttaattaagttgtt 216  Q
    ||||||||| || || |||||||||||||||||||  | | ||| ||  ||||||||| ||||||||||||||| ||||    
T  38239652 atcttttgttatagaaatagcttatacataaacacttacatgatgagtgcttatgctacaagtgcttaattaagatgtt 38239730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 11393483 - 11393548
Alignment:
Q  154 atagcttatacataaacacaaataggataagctcttatgctataagtgcttaattaagttgtttat 219  Q
    |||||||||| |||| |||  ||| ||||| | ||| ||||||||||||||||||||| |||||||    
T  11393483 atagcttatagataagcacttatatgataaacacttgtgctataagtgcttaattaagctgtttat 11393548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 11410144 - 11410209
Alignment:
Q  154 atagcttatacataaacacaaataggataagctcttatgctataagtgcttaattaagttgtttat 219  Q
    |||||||||| |||| |||  ||| ||||| | ||| ||||||||||||||||||||| |||||||    
T  11410144 atagcttatagataagcacttatatgataaacacttgtgctataagtgcttaattaagctgtttat 11410209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 35993396 - 35993441
Alignment:
Q  73 tgttttcagcttattttcataagctctctagggtagcttatacaaa 118  Q
    ||||||||||||||||||||||| |||||| | |||||||| ||||    
T  35993396 tgttttcagcttattttcataagttctctatgatagcttatgcaaa 35993441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 24098173 - 24098129
Alignment:
Q  56 ataacatagccacaaactgttttcagcttattttcataagctctc 100  Q
    |||||||  ||| |||||||||||||||||||| |||||||||||    
T  24098173 ataacatgcccataaactgttttcagcttatttccataagctctc 24098129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 35379032 - 35379072
Alignment:
Q  73 tgttttcagcttattttcataagctctctagggtagcttat 113  Q
    |||||||||||||||||||||||||||| | | ||||||||    
T  35379032 tgttttcagcttattttcataagctctccaagatagcttat 35379072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 43456835 - 43456867
Alignment:
Q  187 cttatgctataagtgcttaattaagttgtttat 219  Q
    ||||||||||||||||||||||||||| |||||    
T  43456835 cttatgctataagtgcttaattaagttttttat 43456867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 43635250 - 43635282
Alignment:
Q  187 cttatgctataagtgcttaattaagttgtttat 219  Q
    ||||||||||||||||||||||||| |||||||    
T  43635250 cttatgctataagtgcttaattaagctgtttat 43635282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 25479635 - 25479595
Alignment:
Q  73 tgttttcagcttattttcataagctctctagggtagcttat 113  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  25479635 tgttttcagcttattttcataagctctctaggatagcttat 25479595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 119
Target Start/End: Original strand, 19092368 - 19092445
Alignment:
Q  41 ttatgaaaacagtctataacatagccacaaactgttttcagcttattttcataagctctctagggtagcttatacaaaa 119  Q
    ||||||||| ||||||| |||| | || |||||||||||| ||||||||||||||||||  ||| ||||||||| ||||    
T  19092368 ttatgaaaatagtctatgacat-gtcataaactgttttcaccttattttcataagctcttcaggatagcttatataaaa 19092445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 29794039 - 29794104
Alignment:
Q  154 atagcttatacataaacacaaataggataagctcttatgctataagtgcttaattaagttgtttat 219  Q
    ||||| |||||||||||||| ||| || || | ||||||||||||| ||||||||||| |||||||    
T  29794039 atagcctatacataaacacatatatgaaaaacacttatgctataagcgcttaattaagctgtttat 29794104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 33975628 - 33975575
Alignment:
Q  69 aaactgttttcagcttattttcataagctctctagggtagcttatacaaaaaca 122  Q
    ||||| |||||||||||||||||||||||||||||| ||| | |||| ||||||    
T  33975628 aaactattttcagcttattttcataagctctctaggatagttcatacgaaaaca 33975575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 7472369 - 7472325
Alignment:
Q  69 aaactgttttcagcttattttcataagctctctagggtagcttat 113  Q
    |||||||||||||||||||||||||||||||| | | ||||||||    
T  7472369 aaactgttttcagcttattttcataagctctccaagatagcttat 7472325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 11639399 - 11639462
Alignment:
Q  40 cttatgaaaacagtctataacatagccacaaactgttttcagcttattttcataagctctctag 103  Q
    |||||||||||||  ||| ||||  ||| || ||||||| ||||||||||||||||||||||||    
T  11639399 cttatgaaaacagcttatgacatgtccataagctgtttttagcttattttcataagctctctag 11639462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 23895305 - 23895230
Alignment:
Q  138 atcttttgtcattgacatagcttatacataaacacaaataggataagctcttatgctataagtgcttaattaagtt 213  Q
    ||||||||| || || |||||||||||||||  ||  ||| ||||||  |||||||| ||||||||||||||||||    
T  23895305 atcttttgttatagaaatagcttatacataataacttatatgataagggcttatgctttaagtgcttaattaagtt 23895230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 44236648 - 44236711
Alignment:
Q  154 atagcttatacataaacacaaataggataagctcttatgctataagtgcttaattaagttgttt 217  Q
    ||||||| |||| ||||||  ||  ||||||| |||||||||||||||||||||||| ||||||    
T  44236648 atagcttctacacaaacacttatgtgataagcacttatgctataagtgcttaattaacttgttt 44236711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 4700082 - 4700123
Alignment:
Q  73 tgttttcagcttattttcataagctctctagggtagcttata 114  Q
    |||||||||||||||||||||||||||| ||| ||| |||||    
T  4700082 tgttttcagcttattttcataagctctccaggatagtttata 4700123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 102
Target Start/End: Original strand, 10199424 - 10199453
Alignment:
Q  73 tgttttcagcttattttcataagctctcta 102  Q
    ||||||||||||||||||||||||||||||    
T  10199424 tgttttcagcttattttcataagctctcta 10199453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 39270440 - 39270481
Alignment:
Q  72 ctgttttcagcttattttcataagctctctagggtagcttat 113  Q
    ||||||||| |||||||||||| |||||||| ||||||||||    
T  39270440 ctgttttcaacttattttcatatgctctctatggtagcttat 39270481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 6279453 - 6279413
Alignment:
Q  73 tgttttcagcttattttcataagctctctagggtagcttat 113  Q
    |||||||||| ||||| ||||||||||||||| ||||||||    
T  6279453 tgttttcagcgtatttccataagctctctaggatagcttat 6279413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 72 - 100
Target Start/End: Complemental strand, 6292548 - 6292520
Alignment:
Q  72 ctgttttcagcttattttcataagctctc 100  Q
    |||||||||||||||||||||||||||||    
T  6292548 ctgttttcagcttattttcataagctctc 6292520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 15361094 - 15361058
Alignment:
Q  73 tgttttcagcttattttcataagctctctagggtagc 109  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  15361094 tgttttcagcttattttcataagctctccaggatagc 15361058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 26461957 - 26461997
Alignment:
Q  73 tgttttcagcttattttcataagctctctagggtagcttat 113  Q
    |||||||||||||||||||||||||||  ||| ||||||||    
T  26461957 tgttttcagcttattttcataagctctgcaggatagcttat 26461997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 72 - 100
Target Start/End: Original strand, 31517755 - 31517783
Alignment:
Q  72 ctgttttcagcttattttcataagctctc 100  Q
    |||||||||||||||||||||||||||||    
T  31517755 ctgttttcagcttattttcataagctctc 31517783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 36151577 - 36151637
Alignment:
Q  109 cttatacaaaaacaattcatctttattccatcttttgtcattgacatagcttatacataaa 169  Q
    ||||||| |||||||||   |||||||  ||||||||| ||||| ||||||||||||||||    
T  36151577 cttatacgaaaacaatttgactttattttatcttttgttattgaaatagcttatacataaa 36151637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 117 - 213
Target Start/End: Original strand, 48748663 - 48748757
Alignment:
Q  117 aaaacaattcatctttattccatcttttgtcattgacatagcttatacataaacacaaataggataagctcttatgctataagtgcttaattaagtt 213  Q
    ||||||||| | ||||||| |||||||||| || || ||||||||||||||| |||| ||| ||||| |  ||| || ||||||| |||||||||||    
T  48748663 aaaacaatttaactttatttcatcttttgt-atagaaatagcttatacataagcacatatatgataaac-attaagccataagtgtttaattaagtt 48748757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 219
Target Start/End: Original strand, 1166 - 1256
Alignment:
Q  129 ctttattccatcttttgtcattgacatagcttatacataaacacaaataggataagctcttatgctataagtgcttaattaagttgtttat 219  Q
    |||||||  ||||||||| || || ||||||||||||||| |||  ||| ||||  |  ||||||||||||| ||||||||||||||||||    
T  1166 ctttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttatgctataagtacttaattaagttgtttat 1256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 219
Target Start/End: Complemental strand, 2809 - 2719
Alignment:
Q  129 ctttattccatcttttgtcattgacatagcttatacataaacacaaataggataagctcttatgctataagtgcttaattaagttgtttat 219  Q
    |||||||  ||||||||| || || ||||||||||||||| |||  ||| ||||  |  ||||||||||||| ||||||||||||||||||    
T  2809 ctttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttatgctataagtacttaattaagttgtttat 2719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 125
Target Start/End: Complemental strand, 19429777 - 19429711
Alignment:
Q  59 acatagccacaaactgttttcagcttattttcataagctctctagggtagcttatacaaaaacaatt 125  Q
    |||| |||| || ||||||||||||||||| ||||||||||| ||| |||||||||  |||||||||    
T  19429777 acattgccataagctgttttcagcttatttccataagctctccaggatagcttatatcaaaacaatt 19429711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 28614791 - 28614864
Alignment:
Q  40 cttatgaaaacagtctataacatagccacaaactgttttcagcttattttcataagctctctagggtagcttat 113  Q
    |||||| ||||| | ||| ||||| ||| || || ||||||||||||||||||||| |||||||| ||||||||    
T  28614791 cttatggaaacaatttatgacatatccataagctcttttcagcttattttcataagttctctaggatagcttat 28614864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 2726403 - 2726443
Alignment:
Q  179 gataagctcttatgctataagtgcttaattaagttgtttat 219  Q
    ||||||| |||||||||||||| ||||||||||||||||||    
T  2726403 gataagcgcttatgctataagttcttaattaagttgtttat 2726443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 29601021 - 29601060
Alignment:
Q  70 aactgttttcagcttattttcataagctctctagggtagc 109  Q
    |||||||||||||||||||||||||| |||||||| ||||    
T  29601021 aactgttttcagcttattttcataagttctctaggatagc 29601060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 52326178 - 52326241
Alignment:
Q  106 tagcttatacaaaaacaattcatctttattccatcttttgtcattgacatagcttatacataaa 169  Q
    |||||||||||| ||||||| | |||||||  ||||||| ||||| | ||||||||||||||||    
T  52326178 tagcttatacaacaacaatttaactttattttatcttttatcattaaaatagcttatacataaa 52326241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 7749199 - 7749264
Alignment:
Q  154 atagcttatacataaacacaaataggataagctcttatgctataagtgcttaattaagttgtttat 219  Q
    ||||| |||||||||||||  ||| | ||| | ||||||||||||| ||||| |||||||||||||    
T  7749199 atagcgtatacataaacacttatatggtaaacacttatgctataagagcttagttaagttgtttat 7749264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 104
Target Start/End: Original strand, 17769655 - 17769688
Alignment:
Q  71 actgttttcagcttattttcataagctctctagg 104  Q
    |||||||||||||||| |||||||||||||||||    
T  17769655 actgttttcagcttatcttcataagctctctagg 17769688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 24193534 - 24193473
Alignment:
Q  158 cttatacataaacacaaataggataagctcttatgctataagtgcttaattaagttgtttat 219  Q
    |||||||||||  ||  ||| |||||||  |||||||||||||||| |||||||||||||||    
T  24193534 cttatacataagtacttatatgataagcgtttatgctataagtgctcaattaagttgtttat 24193473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 30207586 - 30207627
Alignment:
Q  72 ctgttttcagcttattttcataagctctctagggtagcttat 113  Q
    ||||||||||||||||| ||||| ||||||| ||||||||||    
T  30207586 ctgttttcagcttatttccataatctctctaaggtagcttat 30207627  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 2977986 - 2978034
Alignment:
Q  67 acaaactgtttt-cagcttattttcataagctctctagggtagcttata 114  Q
    |||||||||||| ||||||||||||||||| | |||||| |||||||||    
T  2977986 acaaactgtttttcagcttattttcataagttttctaggatagcttata 2978034  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 73 - 146
Target Start/End: Original strand, 5131266 - 5131341
Alignment:
Q  73 tgttttcagcttattttcataagctctctagggtagcttataca--aaaacaattcatctttattccatcttttgt 146  Q
    |||||||||||||||| ||||||||||| ||| |||||| ||||  |||||| || | |||||||  |||||||||    
T  5131266 tgttttcagcttatttccataagctctccaggatagcttttacatgaaaacattttaactttattttatcttttgt 5131341  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 11158369 - 11158413
Alignment:
Q  69 aaactgttttcagcttattttcataagctctctagggtagcttat 113  Q
    |||||||||||||||||||| || |||||||||| | ||||||||    
T  11158369 aaactgttttcagcttatttccacaagctctctaagatagcttat 11158413  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 11264359 - 11264315
Alignment:
Q  69 aaactgttttcagcttattttcataagctctctagggtagcttat 113  Q
    |||||||||||| ||||||| ||||||||||||||| | ||||||    
T  11264359 aaactgttttcaacttatttccataagctctctaggatggcttat 11264315  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 39063664 - 39063704
Alignment:
Q  74 gttttcagcttattttcataagctctctagggtagcttata 114  Q
    |||||||| |||||||||||||||||| ||| |||||||||    
T  39063664 gttttcagtttattttcataagctctccaggatagcttata 39063704  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 41162203 - 41162235
Alignment:
Q  187 cttatgctataagtgcttaattaagttgtttat 219  Q
    |||||| ||||||||||||||||||||||||||    
T  41162203 cttatgttataagtgcttaattaagttgtttat 41162235  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 73 - 101
Target Start/End: Original strand, 54575616 - 54575644
Alignment:
Q  73 tgttttcagcttattttcataagctctct 101  Q
    |||||||||||||||||||||||||||||    
T  54575616 tgttttcagcttattttcataagctctct 54575644  T

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Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 69075 - 69124
Alignment:
Q  170 cacaaataggataagctcttatgctataagtgcttaattaagttgtttat 219  Q
    |||| ||||||||||| |||||||| |||||||||||| |||||||||||    
T  69075 cacatataggataagcgcttatgctttaagtgcttaatgaagttgtttat 69124  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 109 - 214
Target Start/End: Original strand, 8349736 - 8349841
Alignment:
Q  109 cttatacaaaaacaattcatctttattccatcttttgtcattgacatagcttatacataaacacaaataggataagctcttatgctataagtgcttaatt 208  Q
    |||||| |||||||||| | |||||||  ||||||||| |  || |||| ||||||| ||||||  ||| ||||||   |||||||||||| ||||||||    
T  8349736 cttatataaaaacaatttaactttattttatcttttgttagagaaatagtttatacacaaacacttatatgataagtggttatgctataagcgcttaatt 8349835  T
Q  209 aagttg 214  Q
    ||||||    
T  8349836 aagttg 8349841  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 10452464 - 10452541
Alignment:
Q  141 ttttgtcattgacatagcttatacataaacacaaataggataagctcttatgctataagtgcttaattaagttgttta 218  Q
    |||||| || || ||||||||||||||| |||  ||| ||||  | ||||||||||||| ||||||||||||||||||    
T  10452464 ttttgttatagaaatagcttatacataagcactgatatgatagccacttatgctataagagcttaattaagttgttta 10452541  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 32975927 - 32975866
Alignment:
Q  158 cttatacataaacacaaataggataagctcttatgctataagtgcttaattaagttgtttat 219  Q
    |||||||||||||||  ||| || |||| ||||||||||||  |||||||||||||||||||    
T  32975927 cttatacataaacacttatatgagaagcgcttatgctataaacgcttaattaagttgtttat 32975866  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 102
Target Start/End: Complemental strand, 323627 - 323597
Alignment:
Q  72 ctgttttcagcttattttcataagctctcta 102  Q
    |||||||||||||||||||||||||||||||    
T  323627 ctgttttcagcttattttcataagctctcta 323597  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 113
Target Start/End: Complemental strand, 7148718 - 7148680
Alignment:
Q  75 ttttcagcttattttcataagctctctagggtagcttat 113  Q
    |||||| ||||||||||||||||||| ||||||||||||    
T  7148718 ttttcaacttattttcataagctctccagggtagcttat 7148680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 32206089 - 32206151
Alignment:
Q  106 tagcttatacaaaaacaattcatctttattccatcttttgtcattgacatagcttatacataa 168  Q
    |||||||||| |||| |||| | ||||||| ||||||||||||| || |||||||| ||||||    
T  32206089 tagcttatactaaaataatttaactttatttcatcttttgtcatagagatagcttacacataa 32206151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 3155129 - 3155064
Alignment:
Q  154 atagcttatacataaacacaaataggataagctcttatgctataagtgcttaattaagttgtttat 219  Q
    ||||||||||||||| ||   ||| ||||| | ||||||||||||| |||||| ||||||||||||    
T  3155129 atagcttatacataaccatttatatgataaacgcttatgctataagcgcttaaataagttgtttat 3155064  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 4003717 - 4003782
Alignment:
Q  154 atagcttatacataaacacaaataggataagctcttatgctataagtgcttaattaagttgtttat 219  Q
    ||||||||||||||| |||  |||| ||||   |||||||||||||  ||||||||||||||||||    
T  4003717 atagcttatacataagcacttatagcataaaaacttatgctataagcacttaattaagttgtttat 4003782  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 208
Target Start/End: Original strand, 32386169 - 32386270
Alignment:
Q  107 agcttatacaaaaacaattcatctttattccatcttttgtcattgacatagcttatacataaacacaaataggataagctcttatgctataagtgcttaa 206  Q
    |||||||| ||||||| ||   |||||||  ||||||| | | ||| ||||||||||||||| |||  ||| ||||| || |||| ||||||||||||||    
T  32386169 agcttatataaaaacagttttactttattttatcttttctaagtgaaatagcttatacataagcacttatatgataaacttttatactataagtgcttaa 32386268  T
Q  207 tt 208  Q
    ||    
T  32386269 tt 32386270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 32386561 - 32386606
Alignment:
Q  55 tataacatagccacaaactgttttcagcttattttcataagctctc 100  Q
    ||||||||  ||||||  ||||||||||||||||||||||||||||    
T  32386561 tataacatgtccacaacttgttttcagcttattttcataagctctc 32386606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 281864 - 281904
Alignment:
Q  73 tgttttcagcttattttcataagctctctagggtagcttat 113  Q
    |||||||||||||||| ||| ||||||||||| ||||||||    
T  281864 tgttttcagcttatttccatgagctctctaggatagcttat 281904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 6647441 - 6647401
Alignment:
Q  73 tgttttcagcttattttcataagctctctagggtagcttat 113  Q
    |||||||| ||||||||||||||||||||| | ||||||||    
T  6647441 tgttttcaacttattttcataagctctctaagatagcttat 6647401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 9041567 - 9041599
Alignment:
Q  187 cttatgctataagtgcttaattaagttgtttat 219  Q
    ||||||||||||| |||||||||||||||||||    
T  9041567 cttatgctataagcgcttaattaagttgtttat 9041599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 97
Target Start/End: Complemental strand, 27894104 - 27894076
Alignment:
Q  69 aaactgttttcagcttattttcataagct 97  Q
    |||||||||||||||||||||||||||||    
T  27894104 aaactgttttcagcttattttcataagct 27894076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 27059 - 27017
Alignment:
Q  69 aaactgttttcagcttattttcataagctctctagggtagctt 111  Q
    |||||||||||||||||||| ||||||||||||| | ||||||    
T  27059 aaactgttttcagcttatttccataagctctctatgatagctt 27017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 219
Target Start/End: Original strand, 34012 - 34094
Alignment:
Q  137 catcttttgtcattgacatagcttatacataaacacaaataggataagctcttatgctataagtgcttaattaagttgtttat 219  Q
    |||||||||  || || ||||||| ||||||| |||  ||| ||| || ||||||||||||||  ||||||||||||||||||    
T  34012 catcttttgaaatagaaatagcttctacataatcacttatatgatcagatcttatgctataagctcttaattaagttgtttat 34094  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 113
Target Start/End: Complemental strand, 306381 - 306340
Alignment:
Q  72 ctgttttcagcttattttcataagctctctagggtagcttat 113  Q
    |||||||||||||| || ||||||||||||||| ||||||||    
T  306381 ctgttttcagcttacttacataagctctctaggatagcttat 306340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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