View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4863_high_4 (Length: 531)
Name: NF4863_high_4
Description: NF4863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4863_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 15 - 528
Target Start/End: Complemental strand, 33348323 - 33347810
Alignment:
| Q |
15 |
tttgtttcgctaatttttgtatgaatgaatgacattaactctaaaaaacgtagtcaatgtgcttgaggatatttctccttagaatgtgagatgtttacct |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33348323 |
tttgtttcgctaatttttgtatgaatgaatgacattaactctaaaaaacttagtcaatgtgcttgaggatatttctccttagaatgtgagatgtttacct |
33348224 |
T |
|
| Q |
115 |
ttgtagactttactcttgttttgcatctgtaggtatgttaaaaacctcatgggaattgctggtctatctgtaagagaggatgctgttggtaacatatttg |
214 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33348223 |
ttatagactttactcttgttttgcatctgtaggtatgttaaaaacctcatgggaattgctggtctatctgtaagagaggatgctgttggtaacatatttg |
33348124 |
T |
|
| Q |
215 |
gtcgttggtgagtgtttgttcctcaaaagctctctctggaatctagattccaatcaacttatcgttgactcggtcttcaagttcatattaacacctaaat |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33348123 |
gtcgttggtgagtgtttgttcctcaaaagctctctctggaatctagattccaatcaacttatcgttgactctgtcttcaagttcatattaacacctaaat |
33348024 |
T |
|
| Q |
315 |
cttccctcttttagctacggtttacctgtaattaattaactaatatatagctttgcctttgcttggtttatgtagggatggaagtgaacccgggcttgct |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33348023 |
cttccctcttttagctacggtttacctgtaattaattaactaatatatagctttgcctttgcttggtttatgtagggatggaagtgaacccgggcttgct |
33347924 |
T |
|
| Q |
415 |
gcagttgcaacaggttcccacatcgatgctataccttactcgggaaaatatgatggagttgttggtgttttaggcgctgttgaagccatcagtgtcttga |
514 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33347923 |
gcagttgcaacaggttcccacattgatgctataccttactcaggaaaatatgatggagttgttggtgttttaggcgctgttgaagccatcagtgtcttga |
33347824 |
T |
|
| Q |
515 |
aaaggtttttgtct |
528 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
33347823 |
aaaggtttttgtct |
33347810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University