View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4863_low_1 (Length: 587)
Name: NF4863_low_1
Description: NF4863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4863_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 186 - 391
Target Start/End: Complemental strand, 5656840 - 5656632
Alignment:
| Q |
186 |
ccatgaacatgcccaaaaagatgtcttgtaacggcaaaccaatttatcgttttttaatgagtgatagtgggttcccataaactaaatgaaaaggaactga |
285 |
Q |
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| T |
5656840 |
ccatgaacatgcccaaaaagatgtcttgtaacggcaaaccaatttatcgttttttaatgagtgtttgtgggttcccataaacaaaatgaaaaggaactga |
5656741 |
T |
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| Q |
286 |
caaagaatatgcactccaag---nnnnnnnnctcatgtgttacttttggttttggtaacaactcgattctgccacctttgattaatcaaaccttagtcca |
382 |
Q |
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| T |
5656740 |
caaagaatatgcactccaagaaaaaaaaaaactcatgtgttacttttggttttggtaacaactcgattctgccacctttgattaatcaaaccttagtcca |
5656641 |
T |
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| Q |
383 |
cgcaaacaa |
391 |
Q |
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||||||||| |
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| T |
5656640 |
cgcaaacaa |
5656632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 451 - 575
Target Start/End: Complemental strand, 5656585 - 5656461
Alignment:
| Q |
451 |
atatgcataagaaattgaaagcaaaaatagaaagagtagaaagagtctgaattgatgagtcaatggatacatgtacatgttgctattatagcaaccttag |
550 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5656585 |
atatgcataagatattgaaagcaaaaatagaaagagtagaaagaatctgaattgatgagtcaatggatacatgtacatgttgctattatagcagccttag |
5656486 |
T |
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| Q |
551 |
ttggatgtatttcaacccttttgtt |
575 |
Q |
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| T |
5656485 |
ttggatgtatttcaacccttttgtt |
5656461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 5657000 - 5656873
Alignment:
| Q |
24 |
aaaggatatcaaaacttttatagctcctctcatatccttaatcttatacattatgacnnnnnnntatacttaaaaaggaaactttaatgaaagaatccca |
123 |
Q |
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| T |
5657000 |
aaaggatatcaaaacttttatagctcctctcatatccttaatcttatacattatgacaaaaaa-tatacttaaaaaggaaactttaatgaaagaatccca |
5656902 |
T |
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| Q |
124 |
atttttggatatgacagtagaaaatatga |
152 |
Q |
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| T |
5656901 |
atttttggatatgacagtagaaaatatga |
5656873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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