View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4863_low_2 (Length: 456)
Name: NF4863_low_2
Description: NF4863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4863_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 115 - 443
Target Start/End: Original strand, 48960713 - 48961041
Alignment:
| Q |
115 |
gccctactatgtctctacccacatttaggactgcttcagcacccccatcacctcataatcagactcaacctcaagaaaagaaaacagaacaaacattttc |
214 |
Q |
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| T |
48960713 |
gccctactatgtctctacccacatttaggactgcttcagcacccccatcacctcataatcaaactcaacctcaagaaaagaaaacagaacaaacactttc |
48960812 |
T |
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| Q |
215 |
atctccacctcataggggcttgtttcctaattcttcttcatcttcttcgatgccatcttctcctattcaaaagacaacacaatattcaagtagttcttcc |
314 |
Q |
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| T |
48960813 |
atctccacctcataggggcttgtttcccaattcttcttcatcttcttcgatgccatcttctcctattcaaaagacaacacaatattcaagtagttcttcc |
48960912 |
T |
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| Q |
315 |
ccagagaaaactacagccaacacttctcgtgttccaattcccactcaatctccaaaaactattaaacaaaacgttcgtagcccaatgcattcgccaaatg |
414 |
Q |
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| T |
48960913 |
ccagagaaaactacagccaacacttctcgtgttccaattcccactcaatctccaaaaactattaaacaaaacgttcgtagcccaatgcattcgccaaatg |
48961012 |
T |
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| Q |
415 |
ccagatccactaattcaccaccctctcct |
443 |
Q |
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|||||||||||||||||||||| |||||| |
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| T |
48961013 |
ccagatccactaattcaccaccatctcct |
48961041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 48960605 - 48960633
Alignment:
| Q |
19 |
catggttccgcttaacctccattcgcccc |
47 |
Q |
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| T |
48960605 |
catggttccgcttaacctccattcgcccc |
48960633 |
T |
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