View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4863_low_3 (Length: 242)
Name: NF4863_low_3
Description: NF4863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4863_low_3 |
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| [»] scaffold0321 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 19930688 - 19930471
Alignment:
| Q |
21 |
gtcagttacatgatcatttgtgttgcaatgaaatagcttaataactcctttaattctaaatgttcaattctatagtactatgtacctattaagagctaat |
120 |
Q |
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| T |
19930688 |
gtcagttacatgatcatttgtgttgcaatgaaatagcttaataactcctttaattctaaatgttcaattctatagtactatgtacctattaagagctaat |
19930589 |
T |
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| Q |
121 |
aactaatcctcacattaagcactaccacacttcatagagatgaaaaatgaagtgcatacaagtactcatggctttgtttgaccactgataatgtctccac |
220 |
Q |
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| T |
19930588 |
aactaatcctcacattaagcactaccacacttcatagagatgaaaaatgaagtgcatacaagtactcagggctttgtttgaccactaataatgtctccac |
19930489 |
T |
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| Q |
221 |
catactttcctccattca |
238 |
Q |
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|||||||||||||||||| |
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| T |
19930488 |
catactttcctccattca |
19930471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 150
Target Start/End: Original strand, 19990316 - 19990378
Alignment:
| Q |
88 |
ttctatagtactatgtacctattaagagctaataactaatcctcacattaagcactaccacac |
150 |
Q |
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| T |
19990316 |
ttctatagcactatgtgcctactaagagcttatcactcatccccacattaagcactaccacac |
19990378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0321 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 178
Target Start/End: Complemental strand, 2394 - 2324
Alignment:
| Q |
108 |
attaagagctaataactaatcctcacattaagcactaccacacttcatagagatgaaaaatgaagtgcata |
178 |
Q |
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| T |
2394 |
attaagagctaaaagctcaacctcacattaagcactaccacacaccatagggatgaaaaatgtagtgcata |
2324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 16748708 - 16748658
Alignment:
| Q |
128 |
cctcacattaagcactaccacacttcatagagatgaaaaatgaagtgcata |
178 |
Q |
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| T |
16748708 |
cctcacattaagcactaccacatatcatagggacgaaaaatgtagtgcata |
16748658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 178
Target Start/End: Original strand, 29735261 - 29735350
Alignment:
| Q |
89 |
tctatagtactatgtacctattaagagctaataactaatcctcacattaagcactaccacacttcatagagatgaaaaatgaagtgcata |
178 |
Q |
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| T |
29735261 |
tctatagcaccatgcatctattaagagctaaaagttcatgctcacattaagcattatcacacgccatagagatgagaaatgtagtgcata |
29735350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 37343834 - 37343903
Alignment:
| Q |
109 |
ttaagagctaataactaatcctcacattaagcactaccacacttcatagagatgaaaaatgaagtgcata |
178 |
Q |
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| T |
37343834 |
ttaagagctaaaagctcaacctcacattaagcactgccacatgccatagggatgaaaaatgtagtgcata |
37343903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 34247079 - 34247038
Alignment:
| Q |
128 |
cctcacattaagcactaccacacttcatagagatgaaaaatg |
169 |
Q |
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| T |
34247079 |
cctcacattaagcactaccacacaccatagggatgaaaaatg |
34247038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 18983025 - 18983094
Alignment:
| Q |
108 |
attaagagctaataactaatcctcacattaagcactaccacacttcatagagatgaaaaatgaagtgcat |
177 |
Q |
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| T |
18983025 |
attaagagctaaaagctcatcctcgcattaagcactaccacacgccacagggatgaaatatgtagtgcat |
18983094 |
T |
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