View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4864-Insertion-1 (Length: 1038)

Name: NF4864-Insertion-1
Description: NF4864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4864-Insertion-1
NF4864-Insertion-1
[»] chr5 (1 HSPs)
chr5 (8-1020)||(1153745-1154741)
[»] chr7 (1 HSPs)
chr7 (608-661)||(38665065-38665119)


Alignment Details
Target: chr5 (Bit Score: 852; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 852; E-Value: 0
Query Start/End: Original strand, 8 - 1020
Target Start/End: Original strand, 1153745 - 1154741
Alignment:
Q  8 tttacactattatgactcatgagaatgtacatccatacaggaatactttgtttattacatgactaaaattgcaatagctttgcacaaaaatctactttca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1153745 tttacactattatgactcatgagaatgtacatccatacaggaatactttgtttattacatgactaaaattgcaatagctttgcacaaaaatctactttca 1153844  T
Q  108 gaagggctatcatcagcacagtttattggcccccgagacaaaagagaaaacaaactaaggaatgaaagaacgccaacatatatctatctacattctacac 207  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1153845 gaagggctatcatcagcacggtttattggcccccgagacaaaagagaaaacaaactaaggaatgaaagaacaccaacatatatctatctacattctacac 1153944  T
Q  208 cacaaattcagtttattacacacagtactctacaagcagtagagtttcatcatctcctgtcagttccactactctgaggaagcatcggtactctggtcac 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1153945 cacaaattcagtttattacacacagtactctacaagcagtagagtttcatcatctcctgtcagttccactactctgaggaagcatcagtactctggtcac 1154044  T
Q  308 cactcttagcctttcccagcacaataccaagctgcacaaaacagtaccaaataattaattacttgttactagcaaattgaacacaattaagtgataatcc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1154045 cactcttagcctttcccagcacaataccaagctgcacaaaacagtaccagataattaattacttgttactagcaaattgaacacaattaagtgataatcc 1154144  T
Q  408 agaaatcaggaaaatgtaagaagaagaaccttagcctttggagctccacgaccttctttgccttcctttgcatcaacagtggatgcctctacacctgtga 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1154145 agaaatcaggaaaatgtaagaagaagaaccttagcctttggagctccacgaccttctttgccttcctttgcatcaacagtggatgcctctacacctgtga 1154244  T
Q  508 caaacattcatatataatatttaggcacatgtaattaaagaaacttaaaaataagcaagttgattctggaaacctttccaaggattagagaggtaatctt 607  Q
    ||||||||||||||                 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1154245 caaacattcatata-----------------taattaaagaaacttaaaaataagcaagttgattttggaaacctttccaaggattagagaggtaatctt 1154327  T
Q  608 acttttctcaattgcccatccattgcgtttcaaaatctcagagatgagtatgatagttggaatagctggaatttaattcaaaagcaaagttagnnnnnnn 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||           
T  1154328 acttttctcaattgcccatccattgcgtttcaaaatctcagagatgagtatgatagttggaatagctggaatttaattcaaaaacaaagttagaaaaaca 1154427  T
Q  708 nnnnnnnnnnnccttcataatttccaatatcacacactgaagaattagttattctaaagtcgagaaactcaaatcacataaaaattaattaaataatgca 807  Q
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1154428 aaagaaaaaaaccttcataatttccaatatcacacactgaagaattagttattctaaagtcgagaaactcaaatcacataaaaattaattaaataatgca 1154527  T
Q  808 caatacacatacagtttttaaaattaatttgcaagaaaaacaaacaaaaatcagattgaaaacaattttcatatatgaatcaagaataaagttacggttc 907  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1154528 caatacacatacagtttttaaatttaatttgcaagaaaaacaaacaaaaatcagattgaaaacaattttcatatatgaatcaagaataaagttactgttc 1154627  T
Q  908 -aaattaaattttcatatatgaacctaatcagaatctaatatctatctataaattaacggaaagtataaggatcaaagaaaatcagttaattaattcaag 1006  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||    
T  1154628 aaaattaaattttcatatatgaacctaatcagaatctaatatctatctataaattaacggaaagtataaggatcaaagaaaatcagttattaatttcaag 1154727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 608 - 661
Target Start/End: Complemental strand, 38665119 - 38665065
Alignment:
Q  608 acttttctcaattgcccatcc-attgcgtttcaaaatctcagagatgagtatgat 661  Q
    ||||||||||||||| ||| | |||||| |||||||| |||||||||||||||||    
T  38665119 acttttctcaattgcacattctattgcggttcaaaatttcagagatgagtatgat 38665065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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