View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4864-Insertion-5 (Length: 477)
Name: NF4864-Insertion-5
Description: NF4864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4864-Insertion-5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 8 - 477
Target Start/End: Complemental strand, 5502547 - 5502081
Alignment:
| Q |
8 |
aattaaatttgatggcctacgttaataaaaatcactactgcaattggaacatgtatatggagaagctatggagctatggaccatctgtcaggtnnnnnnn |
107 |
Q |
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| T |
5502547 |
aattaaatttgatggcctacgttaataaaaatcactactgcaattggaccatgtatatggagaggctatggagctatggaccatctgtcaggtccccccc |
5502448 |
T |
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| Q |
108 |
nnnnnnntgcctactcagcggtctaaacatgaaccacacatttcgaccaaaaacaatgaaagaattaccacacacaaataaagaaattcaaagcattata |
207 |
Q |
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| T |
5502447 |
agccccctgcctactcagcggtctaaacatgaaccacacatttcgaccaaaaacaatgaaagaattaccacacacaaataaagaaattcaaagcattata |
5502348 |
T |
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| Q |
208 |
tgttttctttttgttgtttgacagttttaaagcattattatgtctgctgtttaattagtacattgtagtacattttttagaagggacttcttctctgagt |
307 |
Q |
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| T |
5502347 |
ttttttctttttgttatttgacagttttaaagcattattatgtctgctgtttaattagtacattgta---cattttttagaagggacttcttctctgagt |
5502251 |
T |
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| Q |
308 |
tgcatgcatgtttgggatgctagttaccagaccacatgtgatagatagagtagtttgtaatgttagaacttagtattcatactctatgttactcttgtac |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5502250 |
tgcatgcatgtttgggatgctagttaccagaccacatgtgatagatagagtagtttgtaatgttataacttagtattcatactctatgttactcttgtac |
5502151 |
T |
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| Q |
408 |
attactaacactttgctattataattaatgttaactctgagggtcttactcttattatctctttctcctc |
477 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5502150 |
attactaacactttgctattataattaatgttaactctgagggtcttactcttattatctctttctcctc |
5502081 |
T |
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