View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4864_high_3 (Length: 328)
Name: NF4864_high_3
Description: NF4864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4864_high_3 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 96642 - 96346
Alignment:
| Q |
18 |
catagcgccactatagccgctatttgacagtattgaccaaaatataactaactttgccgtatttaatgttattattctccaatcattcatcaataaaaca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
96642 |
catagcgccactatagccgctatttgacagtattgacaaaaatataactaactttgccgtatttaatgttattattctccaatcattcatcaataaaaca |
96543 |
T |
|
| Q |
118 |
agttctcgtgcaaattaagtccagagggagtatgtaatacacgtgtctatacctggagaagtctccacagagaatcaggccatgacggatcagcagcctg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
96542 |
agttctcgtgcaaattaagtccagagggagtatgtaatacacgtgtctatacctggagaagtctccacagagaatcaggccatgacggatcagcagcctg |
96443 |
T |
|
| Q |
218 |
aacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatggccatcttgaacctcattccaggacaccacctaatctga |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
96442 |
cacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatgggcatcttgaacctcattccaggacaccacctaatctga |
96346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 56 - 314
Target Start/End: Complemental strand, 88596 - 88338
Alignment:
| Q |
56 |
aaaatataactaactttgccgtatttaatgttattattctccaatcattcatcaataaaacaagttctcgtgcaaattaagtccagagggagtatgtaat |
155 |
Q |
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||||| |||||||||| ||||||||| | |||||||||| || ||||||||||||||||||| |||| || |||||| || ||||||||||| |||| |
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| T |
88596 |
aaaatctaactaacttcaccgtatttaccgctattattctcaaaacattcatcaataaaacaagctctcatgtaaattagttctagagggagtatataat |
88497 |
T |
|
| Q |
156 |
acacgtgtctatacctggagaagtctccacagagaatcaggccatgacggatcagcagcctgaacagaagcaacagttccgataaaccaacttatccttg |
255 |
Q |
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| || ||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
88496 |
aaacatgtctatacctcgagaagtctccacatagaatcagaccatgacggatcagcagcctgaacagaagcaacagttccgataaaccaacttatccttg |
88397 |
T |
|
| Q |
256 |
atgagtcctcggtttcaatggccatcttgaacctcattccaggacaccacctaatctga |
314 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
88396 |
atgagtcctcggtttcaatggccatcttgaacctcattccaggacaccacctaatctga |
88338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 40869640 - 40869936
Alignment:
| Q |
18 |
catagcgccactatagccgctatttgacagtattgaccaaaatataactaactttgccgtatttaatgttattattctccaatcattcatcaataaaaca |
117 |
Q |
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|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40869640 |
catagcgccactatagccgctatttgacagtattgacaaaaatataactaactttgccgtatttaatgttattattctccaatcattcatcaataaaaca |
40869739 |
T |
|
| Q |
118 |
agttctcgtgcaaattaagtccagagggagtatgtaatacacgtgtctatacctggagaagtctccacagagaatcaggccatgacggatcagcagcctg |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40869740 |
agttctcgtgcaaattaagtccagagggagtatgtaatacacgtgtctatacctggagaagtctccacagagaatcaggccatgacggatcagcagcctg |
40869839 |
T |
|
| Q |
218 |
aacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatggccatcttgaacctcattccaggacaccacctaatctga |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40869840 |
cacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatgggcatcttgaacctcattccaggacaccacctaatctga |
40869936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 56 - 314
Target Start/End: Original strand, 40877687 - 40877945
Alignment:
| Q |
56 |
aaaatataactaactttgccgtatttaatgttattattctccaatcattcatcaataaaacaagttctcgtgcaaattaagtccagagggagtatgtaat |
155 |
Q |
| |
|
||||| |||||||||| ||||||||| | |||||||||| || ||||||||||||||||||| |||| || |||||| || ||||||||||| |||| |
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| T |
40877687 |
aaaatctaactaacttcaccgtatttaccgctattattctcaaaacattcatcaataaaacaagctctcatgtaaattagttctagagggagtatataat |
40877786 |
T |
|
| Q |
156 |
acacgtgtctatacctggagaagtctccacagagaatcaggccatgacggatcagcagcctgaacagaagcaacagttccgataaaccaacttatccttg |
255 |
Q |
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| || ||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40877787 |
aaacatgtctatacctcgagaagtctccacatagaatcagaccatgacggatcagcagcctgaacagaagcaacagttccgataaaccaacttatccttg |
40877886 |
T |
|
| Q |
256 |
atgagtcctcggtttcaatggccatcttgaacctcattccaggacaccacctaatctga |
314 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40877887 |
atgagtcctcggtttcaatggccatcttgaacctcattccaggacaccacctaatctga |
40877945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 304
Target Start/End: Complemental strand, 21716367 - 21716267
Alignment:
| Q |
204 |
ggatcagcagcctgaacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatggccatcttgaacctcattccaggacacc |
303 |
Q |
| |
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|||||| || ||||||||||||| | ||||| ||||||||||| ||||| || ||||| || ||||||| || ||||||||||||||| |||| ||||| |
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| T |
21716367 |
ggatcaacaacctgaacagaagcgattgttcccataaaccaactaatcctagaagagtcttcagtttcaaagggcatcttgaacctcatcccagaacacc |
21716268 |
T |
|
| Q |
304 |
a |
304 |
Q |
| |
|
| |
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|
| T |
21716267 |
a |
21716267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 1725978 - 1726018
Alignment:
| Q |
53 |
accaaaatataactaactttgccgtatttaatgttattatt |
93 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||| |
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| T |
1725978 |
accaaaatataattaactttgctctatttaatgttattatt |
1726018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 313
Target Start/End: Complemental strand, 28347416 - 28347335
Alignment:
| Q |
232 |
ttccgataaaccaacttatccttgatgagtcctcggtttcaatggccatcttgaacctcattccaggacaccacctaatctg |
313 |
Q |
| |
|
|||| |||||||||||||| | || || ||||||||||||| |||||||||||| || ||||||| |||||| | |||||| |
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| T |
28347416 |
ttcccataaaccaacttattcgagacgaatcctcggtttcaaaggccatcttgaatcttattccagaacaccatcgaatctg |
28347335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 304
Target Start/End: Complemental strand, 42730825 - 42730737
Alignment:
| Q |
216 |
tgaacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatggccatcttgaacctcattccaggacacca |
304 |
Q |
| |
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|||||||||| || |||||| ||||||||||| ||||| || || ||||| ||||||| | ||| ||||| ||||| |||| |||||| |
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| T |
42730825 |
tgaacagaagaaatagttcccataaaccaactaatcctagaagaatcctcagtttcaaaaggcattttgaatctcataccagaacacca |
42730737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 27318052 - 27318024
Alignment:
| Q |
19 |
atagcgccactatagccgctatttgacag |
47 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
27318052 |
atagcgccactatagccgctatttgacag |
27318024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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