View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4864_low_1 (Length: 685)
Name: NF4864_low_1
Description: NF4864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4864_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-166; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 20 - 394
Target Start/End: Complemental strand, 36233398 - 36233027
Alignment:
| Q |
20 |
gtgagcaagtagacctaagtttgtcgtacaacaaaaatatatataaccattattcttgaaatcctcgaaaactatagaggttcaattcaaccactagcat |
119 |
Q |
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| T |
36233398 |
gtgagcaagtagacctaagtttgtcgtacaacaaaaatatatataaccattattcttgaaatcctcgaaaacaagagaggttcaattcaaccactagcat |
36233299 |
T |
|
| Q |
120 |
tgaacatatttcttcttttatacaatgtgacattattttctatatattactttcaaatcaaaatatagctggagtgttgatttgtcctttacaaccttgc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36233298 |
tgaacatatttcttcttttatacaatgtgacattattttctatatattacttccaaatcaaaatatagctggagtgttgatttgtcctttacaaccttgc |
36233199 |
T |
|
| Q |
220 |
cttttaagcacaccaaaccaaatttgtaaccatatatattttctttcttcaattcccttttggactctcctccaaaatttctctatctatcctttccata |
319 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| || ||||||| |||| |||||||| |
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| T |
36233198 |
cttttaagcacaccaaaccaaatttgtaaccaaatatattttctttcttcaattcccctttggactctccatcac---ttctctagctattatttccata |
36233102 |
T |
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| Q |
320 |
aattaactcttatacatgtttcagatagaatgcttgaatgctcagagaaaggtaagaaaactctttcaaaatata |
394 |
Q |
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| T |
36233101 |
cattaactcttatacatgtttcagatagcatgcttgaatgtccagagaaaggtaagaaaactctttcaaagtata |
36233027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 389 - 666
Target Start/End: Complemental strand, 36232979 - 36232717
Alignment:
| Q |
389 |
aatatatggtaaccaaacttttcaagcatactttttgtactcttaaaaataagtttgcataaatttgataattaataaatttcatatattcttaggggga |
488 |
Q |
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| T |
36232979 |
aatatatggtaaccaaacttttcaagcatactttttgtactctcaaaaataatttttcatatattctttaat-----------atctat----aggggga |
36232895 |
T |
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| Q |
489 |
gattttttgatgagataggaaagaagagggagggtgatgattcttttcaaaagggaagaatgttaggtccttcaggaacgttaaatacaactactccttg |
588 |
Q |
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||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36232894 |
gattttttgatgagataggaaagaagagggaaggtgatgagtcttttcaaaagggaagaatgttaggtccttcaggaacactaaatacaactactccttg |
36232795 |
T |
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| Q |
589 |
tgctgcatgtaagcttttgagacgaaggtgtgcccaagaatgccctttttctccatatttctctcctcatgagcctca |
666 |
Q |
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| T |
36232794 |
tgctgcatgcaagcttttgagacgaaggtgtgcccaagaatgccctttttctccatatttctctcctcatgagcctca |
36232717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 584 - 666
Target Start/End: Complemental strand, 31869448 - 31869366
Alignment:
| Q |
584 |
ccttgtgctgcatgtaagcttttgagacgaaggtgtgcccaagaatgccctttttctccatatttctctcctcatgagcctca |
666 |
Q |
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|||||||||||||||||||| |||||| |||| ||||| | ||||||||||| ||||| ||||| || || ||||||||||| |
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| T |
31869448 |
ccttgtgctgcatgtaagctattgagaagaagatgtgctgaggaatgccctttctctccttatttttcaccacatgagcctca |
31869366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 548 - 660
Target Start/End: Complemental strand, 43201032 - 43200920
Alignment:
| Q |
548 |
atgttaggtccttcaggaacgttaaatacaactactccttgtgctgcatgtaagcttttgagacgaaggtgtgcccaagaatgccctttttctccatatt |
647 |
Q |
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||||||||||| ||||||| ||||||| | || |||||||| ||||||||||| || ||| |||| ||||| ||||| || || |||||||| |||| |
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| T |
43201032 |
atgttaggtccaccaggaaccctaaatactataaccccttgtgcagcatgtaagctattaagaagaagatgtgctcaagagtgtcccttttctccctatt |
43200933 |
T |
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| Q |
648 |
tctctcctcatga |
660 |
Q |
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||||||||||||| |
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| T |
43200932 |
tctctcctcatga |
43200920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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