View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4864_low_6 (Length: 258)
Name: NF4864_low_6
Description: NF4864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4864_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 82 - 239
Target Start/End: Complemental strand, 24510749 - 24510592
Alignment:
| Q |
82 |
caattgaaccattcaattccatcaaccaattgacagaattgtaagtttgaaacaaccagggctctgcatctcctctagttctcctataaatgaaagtgag |
181 |
Q |
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| T |
24510749 |
caattgaaccattcaattccatcaaccaattgacagaattgtaagtttgaaacaaacagggctctgcatctcctctagttctcctacaaatgaaagtgag |
24510650 |
T |
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| Q |
182 |
ctatagaatttattcaaagatgcaggcaatcaaggtgcaaatgatttgctcctccata |
239 |
Q |
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| T |
24510649 |
ctatataatttattcaaagatgcaggcaatcaatgtgcaaatgatttgctcctccata |
24510592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 24511409 - 24511344
Alignment:
| Q |
18 |
agcagaaacatagggggcagaaaaagagaacaatggccaaa-caatggcaaagaaccataccagcc |
82 |
Q |
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|||||| ||||| || |||||||| |||| ||||||||||| |||||||||||||||||||||||| |
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| T |
24511409 |
agcagacacatacggagcagaaaaggagagcaatggccaaaacaatggcaaagaaccataccagcc |
24511344 |
T |
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