View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4865-Insertion-1 (Length: 1087)
Name: NF4865-Insertion-1
Description: NF4865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4865-Insertion-1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 657; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 8 - 1066
Target Start/End: Original strand, 12465953 - 12467035
Alignment:
| Q |
8 |
agtagttcctgcatatatcaaattggatggggaaaa-aataaattttagaaccaaaaggattattgggaaaacaaattatgaaagagggagggaaacaat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12465953 |
agtagttcctgcatatatcaaattggatagggaaaaaaataaattttagaaccaaaaggattattgggaaaacaaattatgaaagagggaaggaaacaat |
12466052 |
T |
|
| Q |
107 |
attcaatatttaatacgcatgtgacatgtcaataatcacaatggagcggagcgggtacaagtttcaactttttcgtccttgtcattgattatagttacac |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
12466053 |
attcaatatttaatacgcatgtgacatgtcaataatcacaatggagcggagcgggtacaagtttcaactttctcgtccttgtctttgattatagttacac |
12466152 |
T |
|
| Q |
207 |
gttaccctatctgatttttgatgggggtgagaaattgaactccgtctccgacgaatttcaaggaatctcctcatagtctccatctccatagtgcaataan |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12466153 |
gttaccctatctgatttttgatgggggtgagaaattgaactccgtctccgacgaatttcaaggaatctcctcatagtctccatctccatagtgcaataat |
12466252 |
T |
|
| Q |
307 |
nnnnnnaatnnnnnnnngtatttcc----aattcctgccccgagcacataattttttccaaaaccttgacctactatcagaaattaatttccaccatttt |
402 |
Q |
| |
|
||| |||||||| |||||| ||| |||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12466253 |
ttttttaataaaaaaaagtatttccaattaattcccgcctcgagcacagatttttttccaaaaccttaacctactatcagaaattaatttccaccatttt |
12466352 |
T |
|
| Q |
403 |
tctattaatataatccatttggggtggaaatttttctattaatatagtccatttgaggtggaa----accgaacaccatgtgtatttgtcaatcacaaac |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||| || |||||||||||||||||||||||||| |
|
|
| T |
12466353 |
tctattaatataatccatttggggtggaaatttttctattaatataatccatttggggtggaaaattaccaaataccatgtgtatttgtcaatcacaaac |
12466452 |
T |
|
| Q |
499 |
taagaaaatgttcacagtattttaaaattcaaaaatatctcaaaagtatggatgacatttaaaggctagcatgttgtatgtcagtgtgggtaccagctat |
598 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
12466453 |
taagaaaatgttcacagtatttgaaaattcaaaaatatctcaaaagtatggatgacatttaaaggctagcatgttgtatatcagtgtgcgtaccagctat |
12466552 |
T |
|
| Q |
599 |
atccacgttttcttacccatcctatatccgttttt--------------acccaaactcaatcaaagcgagaaaaacccgttaggttgaggtgggtttgg |
684 |
Q |
| |
|
|||||| |||| |||| |||| | ||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12466553 |
atccacattttgttactcatcatgtatccgttttttgaaattagggaaaactcaaactcaatcaaagcgagaaaaacccgttaagttgaggtgggtttgg |
12466652 |
T |
|
| Q |
685 |
acggctacctgtgaatacgtgtattttttccatacctactcctaagtataggatttatttcactaaaattaaaaaagttggttgtgatattaaatttgtt |
784 |
Q |
| |
|
||||||||| || ||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
12466653 |
acggctacccgtagatacgagta-tttttccatacctactcctaaatataggatttatttcactaaaattaaaaaagttggttgtaatattaaatttgtt |
12466751 |
T |
|
| Q |
785 |
cacaattgatattgatc----tatttatttatttacacttaagtagagaacagtttaatgttttcattagagagatcatttattacaaaatgc-aaacaa |
879 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
12466752 |
cacaattgatattgatctatttatttatttatttacacttaagtagagaacaatttaatgttttcattagagagat-atttattacaaaatgcaaaacaa |
12466850 |
T |
|
| Q |
880 |
tgtaacataacaa-cgatgaaattgaaatttgagaagagtcttgcaaaaagagac-nnnnnnnntaataaattaaagtggtcttagtataattaaaggag |
977 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||| | ||| ||| |
|
|
| T |
12466851 |
tgtaacataataagcgatgaaattgaaatttgagaagagtcttgcaaaaagagacaaaaaaaaaaaaaaaattaaagt-gtcttagtaataataacagag |
12466949 |
T |
|
| Q |
978 |
gagagataacaccataatctct-aacaccagaattatattgatgtcattataaatttggtggaacgatttaacccaataaatacaggtgt |
1066 |
Q |
| |
|
||||||||||| |||||||||| |||||||| ||||||| || || ||||||||||||||||||||| | |||||||||||| |||| |
|
|
| T |
12466950 |
gagagataacaacataatctctaaacaccag-attatatgaatctc---ataaatttggtggaacgattttaaccaataaatacaagtgt |
12467035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 530 - 559
Target Start/End: Original strand, 3096283 - 3096312
Alignment:
| Q |
530 |
aaaatatctcaaaagtatggatgacattta |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
3096283 |
aaaatatctcaaaagtatggatgacattta |
3096312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 371 - 432
Target Start/End: Complemental strand, 44830411 - 44830350
Alignment:
| Q |
371 |
acctactatcagaaattaatttccaccatttttctattaatataatccatttggggtggaaa |
432 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
44830411 |
acctactaccataaattaatttccaccatttttctattaatctaatccatttggggtagaaa |
44830350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 383 - 424
Target Start/End: Complemental strand, 34886207 - 34886166
Alignment:
| Q |
383 |
aaattaatttccaccatttttctattaatataatccatttgg |
424 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||| ||||||| |
|
|
| T |
34886207 |
aaattaatttccaccattttcctattaatctaatacatttgg |
34886166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 522 - 574
Target Start/End: Original strand, 23525716 - 23525768
Alignment:
| Q |
522 |
aaaattcaaaaatatctcaaaagtatggatgacatttaaaggctagcatgttg |
574 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| ||| | |||||||| |
|
|
| T |
23525716 |
aaaattcaaaaatatctcaaaagtagggatgacatttagaggtttgcatgttg |
23525768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 526 - 559
Target Start/End: Complemental strand, 4465378 - 4465345
Alignment:
| Q |
526 |
ttcaaaaatatctcaaaagtatggatgacattta |
559 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
4465378 |
ttcaaaaatatctcaaaagtatagatgacattta |
4465345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 372 - 432
Target Start/End: Original strand, 31399122 - 31399183
Alignment:
| Q |
372 |
cctactatcagaaattaatttccaccatttttctattaat-ataatccatttggggtggaaa |
432 |
Q |
| |
|
||||||||||||| |||||||| | ||||||||||||| |||||||||||||||||||| |
|
|
| T |
31399122 |
cctactatcagaatttaatttcaatattttttctattaatcttaatccatttggggtggaaa |
31399183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 383 - 427
Target Start/End: Complemental strand, 40486076 - 40486032
Alignment:
| Q |
383 |
aaattaatttccaccatttttctattaatataatccatttggggt |
427 |
Q |
| |
|
||||| |||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
40486076 |
aaattgatttccacaatttttctattaatttaatccatttggggt |
40486032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University