View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4865-Insertion-11 (Length: 364)
Name: NF4865-Insertion-11
Description: NF4865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4865-Insertion-11 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 8 - 364
Target Start/End: Original strand, 26721785 - 26722140
Alignment:
| Q |
8 |
gttagaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaacatcaaactcacnnnnnnnnnnnctcattctcttattacttttaatt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| |||||||||||| |
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| T |
26721785 |
gttagaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaaaaacaaactcacttttttttat-ctcattctcttcttacttttaatt |
26721883 |
T |
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| Q |
108 |
tcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaaaaaccatgagccttggatta |
207 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26721884 |
tcattttattctgtaataatgataacgagattgtttctatctacactttataggttctacaaatatggttcaaagaagaaaaaccatgagccttggatta |
26721983 |
T |
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| Q |
208 |
tgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcagtactcaaaaacaaaactccaattctcat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
26721984 |
tgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaactccaattctcat |
26722083 |
T |
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| Q |
308 |
aatcacaaaaccaaaaggcatcattccttctcaaattaattttttcttctcactcag |
364 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26722084 |
aatcacgaaaccaaaaggcatcattccttctcaaattaattttttcttctcactcag |
26722140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 364
Target Start/End: Original strand, 2987256 - 2987596
Alignment:
| Q |
11 |
agaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaacatcaaactcacnnnnnnnnnnnctcattctcttattacttttaatttca |
110 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||| |
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| T |
2987256 |
agaggcttatcactctctttttaagagcatgttcccaaagtgattgggaacatcaaattcactttttttttatctcattctcttcttacttttaatttca |
2987355 |
T |
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| Q |
111 |
ttttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaaaaaccatgagccttggattatga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2987356 |
ttttattctgtaataatgataatgagattgtttctatctatactttataggttctgcaaatatggttcaaagaagaaaaaccatgagccttggattatg- |
2987454 |
T |
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| Q |
211 |
tttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcagtactcaaaaacaaaactccaattctcataat |
310 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||| |
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| T |
2987455 |
------------atttgagaaaatggtttaatactctatttgttgtgtaatttccatcaatgttctcactactcaaagacaaaactccaattctcataat |
2987542 |
T |
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| Q |
311 |
cacaaaaccaaaaggcatcattccttctcaaattaattttttcttctcactcag |
364 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2987543 |
cacgaaaccaaaaggcatcattccttctcaaattaattttttcttctcactcag |
2987596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 364
Target Start/End: Complemental strand, 45117121 - 45116782
Alignment:
| Q |
11 |
agaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaacatcaaactcacnnnnnnnnnnnctcattctcttattacttttaatttca |
110 |
Q |
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||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||| |
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| T |
45117121 |
agaggctcatcactctctttttaagagcatgctcccaaagtgattgggaacatcaaattcacttttttttat-ctcattctcttcttacttttaatttca |
45117023 |
T |
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| Q |
111 |
ttttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaaaaaccatgagccttggattatga |
210 |
Q |
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| T |
45117022 |
ttttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaaaaaccatgagccttggattatga |
45116923 |
T |
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| Q |
211 |
tttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcagtactcaaaaacaaaactccaattctcataat |
310 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
45116922 |
tttgag-------------aaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaactccaattctcataat |
45116836 |
T |
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| Q |
311 |
cacaaaaccaaaaggcatcattccttctcaaattaattttttcttctcactcag |
364 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45116835 |
cacgaaaccaaaaggcatcattccttctcaaattaattttttcttctcactcag |
45116782 |
T |
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