View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4865-Insertion-2 (Length: 1052)
Name: NF4865-Insertion-2
Description: NF4865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4865-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 933; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 933; E-Value: 0
Query Start/End: Original strand, 18 - 1040
Target Start/End: Original strand, 47827983 - 47829012
Alignment:
| Q |
18 |
ttggcaggttcgacagagatcttaaatggcgtacaggtgttgaaattgttccaatgcattgttcaagttcaaacggtttcagaatcacattctcttgttt |
117 |
Q |
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| T |
47827983 |
ttggcaggttcgacagagatcttaaatggcgtacaggtgttgaaattgttccaatgcattgttcaagttcaaacggtttcagaatcacatcctcttgttt |
47828082 |
T |
|
| Q |
118 |
agaacaagcctatcgacaagcacaaaaccttaaccttaatgtcaaaggtgtactaataaccaatccttcaaacccattaggcataaccatgaccaaatca |
217 |
Q |
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| T |
47828083 |
agaacaagcctatcaacaagcacaaaaccttaaccttaatgtcaaaggtgtactaataaccaatccttcaaacccattaggcataaccatgaccaaatca |
47828182 |
T |
|
| Q |
218 |
gaacttcacaaactagtagattttgcattagacaaaaacattcacataataagcgacgaaatctactcaggtactgtcttcgattcaccaaaattcgtaa |
317 |
Q |
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| T |
47828183 |
gaacttcacaaactagtagattttgcattagacaaaaacattcacataataagcgacgaaatctactccggtactgtcttcgattcaccaaaattcgtaa |
47828282 |
T |
|
| Q |
318 |
gcatcatggaagttattaacgaaagaattcacgaaaacgatgaaatttcaaagcgtgttcacatcgtttatagtctctctaaagacctcggtgtacctgg |
417 |
Q |
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| T |
47828283 |
gcatcatggaagttattaacgaaagaattcacgaaaacgatgaaatttcaaagcgtgttcacatcgtttatagtctctctaaagacctcggtgtacctgg |
47828382 |
T |
|
| Q |
418 |
ttttcgtgtaggaatgatatattcaaataacaaaatggttgtatctacagctaccaaaatgtcaagttttggacttatttcgtcgcaaactcaatatttg |
517 |
Q |
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| T |
47828383 |
ttttcgtgtaggaatgatatattcaaataacaaaatggttgtatctacagctaccaaaatgtcaagttttggacttatttcgtcgcaaactcaatatttg |
47828482 |
T |
|
| Q |
518 |
ctagcaaatttacttggtgacgatgaatttacttttaaatatatggatgagaataagaggagattaaagaaacgaaagcaaatccttgtaaccggtttaa |
617 |
Q |
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| T |
47828483 |
ctagcaaatttacttggtgacgatgaatttacttttaaatatatggatgagaataagaggagattaaagaaacgaaagcaaatccttgtaaccggtttaa |
47828582 |
T |
|
| Q |
618 |
gaaatgcggggattcgttgtttaaagagtaatgctggattgttctgttgggttgatatgaggcatttattgagttctgcaacttttgaggcagagaatga |
717 |
Q |
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| T |
47828583 |
gaaatgcggggattagttgtttaaagagtaatgctggattgttctgttgggttgatatgaggcatttattgagttctgcaacttttgaggcagagaatga |
47828682 |
T |
|
| Q |
718 |
gctttggaaaaggattctttaccaaattggtttgaatatatctcctggatcttcttgtcattgttctgaacctggctggtttaggatttgctttgctaat |
817 |
Q |
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| T |
47828683 |
gctttggaaaaggattctttaccaaattggtttgaatatatctcctggatcttcttgtcattgttctgaacctgggtggtttaggatttgctttgctaat |
47828782 |
T |
|
| Q |
818 |
atgtctcaagaagctttgcaagttgcaatgcgaaggattaagatctttacagattcaaattcaaccatgttttctattaaacaacaacttgtcactagta |
917 |
Q |
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| T |
47828783 |
atgtctcaagaagctttgcaagttgcaatgcgaaggattaagatctttacagattcaaattcaaccatgttttctattaaacaacaacttgtcactagta |
47828882 |
T |
|
| Q |
918 |
ctaaaccaattattatcactacggtagaa-ggaaattactaattggggttttctagttatcat-gaaaaaataatcag-agc--aataat-atttttctt |
1011 |
Q |
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| T |
47828883 |
ctaaaccaattattatcactacggtagaagggaaattactaatt-ggcttttctagttatcatggaaagaataatcagaagccaattaataatttttctt |
47828981 |
T |
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| Q |
1012 |
ctaaa--taaaaaatgatatatttgcagaga |
1040 |
Q |
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| T |
47828982 |
ctaaaataaaaaaatgatatatttgcagaga |
47829012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 820
Target Start/End: Complemental strand, 42788893 - 42788822
Alignment:
| Q |
749 |
ttgaatatatctcctggatcttcttgtcattgttctgaacctggctggtttaggatttgctttgctaatatg |
820 |
Q |
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|||||||||||||| || | ||||||||||||| | ||||||| |||||||| | ||||||||||||||| |
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| T |
42788893 |
ttgaatatatctccggggtgttcttgtcattgtgatcaacctggttggtttagagtctgctttgctaatatg |
42788822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 820
Target Start/End: Complemental strand, 42798431 - 42798360
Alignment:
| Q |
749 |
ttgaatatatctcctggatcttcttgtcattgttctgaacctggctggtttaggatttgctttgctaatatg |
820 |
Q |
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|||||||||||||| || | ||||||||||||| | ||||||| |||||||| | ||||||||||||||| |
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| T |
42798431 |
ttgaatatatctccggggtgttcttgtcattgtgatcaacctggttggtttagagtctgctttgctaatatg |
42798360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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