View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4865-Insertion-4 (Length: 724)
Name: NF4865-Insertion-4
Description: NF4865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4865-Insertion-4 |
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| [»] scaffold0329 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 6 - 533
Target Start/End: Complemental strand, 6921926 - 6921403
Alignment:
| Q |
6 |
caatgtcatgattaaatctacaaatgaaggtcttgcataaattcaaaatgagccatcccttgagctgtgcactggattggctcaaattgacatctttatt |
105 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||| ||||||| |
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| T |
6921926 |
caatgtcatgattaaatctacatatgaaggtcttgcataaattcaaaatgagccatcccttgagttgtgcaccggattagctcaaattgacagctttatt |
6921827 |
T |
|
| Q |
106 |
aggaaattatacctgtttaacacactacaaaccaacttggcgaaaccataaacttatctccatttagccaagcaatccaaagtatgatgttgttgtaagg |
205 |
Q |
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||||||||||||| || ||||||||||||||||||||| | ||||||||||| |||| ||||||||||||||||| ||||||||||||||||| |||| |
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| T |
6921826 |
aggaaattatacccgtctaacacactacaaaccaacttagtgaaaccataaagttatttccatttagccaagcaacccaaagtatgatgttgt---aagg |
6921730 |
T |
|
| Q |
206 |
agttccgatttacaaacttgcgatcttccctaatataaggcttaaacacatgtaaagtacaacgagggagcaataatgaccagacctagggtcctactaa |
305 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
6921729 |
ccttccgatctacaaacttgcgatcttccctaatataaggcttaaacacatgtaaagtaaaacgaggaagcaataatgaccagacctagggtcctactaa |
6921630 |
T |
|
| Q |
306 |
acctggatcagcaaccacccgataaagagcatcttttaatgcctgagacaatgcaaaacgacaactttgaggaatactcttcacaataaagataggtact |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6921629 |
acctggatcagcaaccacccgataaagagcatcttttaatgcctgagagaatgcaaaacgacaactttgaggaatactcttcacaataaagataggtact |
6921530 |
T |
|
| Q |
406 |
tggaagacttcctttaacaactttgcctccaaaaccaacccttggtttacactaatagtatcaagtattttatagatggttttaaaatatgtacaatgtg |
505 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6921529 |
tggaagacttcctttaacaactttgcctccaaaaccaacccttgg-ttacaccaataatatcaagtattttatagatggttttaaaatatgtacaatgtg |
6921431 |
T |
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| Q |
506 |
actcgtgacctcccctgtctcattagta |
533 |
Q |
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| T |
6921430 |
actcctgacctcccctctcttattagta |
6921403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329 (Bit Score: 73; Significance: 6e-33; HSPs: 2)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 326 - 442
Target Start/End: Complemental strand, 16768 - 16653
Alignment:
| Q |
326 |
gataaagagcatcttttaatgcctgagacaatgcaaaacgacaactttgaggaatactcttcacaataaagataggtacttggaagacttcctttaacaa |
425 |
Q |
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|||||||||||||||||||||||||||| ||||||| || |||||||||||||||||| |||||| | ||||||||||||||||||||||| | |||||| |
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| T |
16768 |
gataaagagcatcttttaatgcctgagagaatgcaatactacaactttgaggaatact-ttcacagtgaagataggtacttggaagacttcatctaacaa |
16670 |
T |
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| Q |
426 |
ctttgcctccaaaacca |
442 |
Q |
| |
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| |||| |||||||||| |
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| T |
16669 |
ccttgcatccaaaacca |
16653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 566 - 673
Target Start/End: Complemental strand, 16582 - 16476
Alignment:
| Q |
566 |
acgactcatggcatgaaaactgatacacattccacacatacattgcttaagcatccttaaagactcctccaaaaccataaacaaactccaatcactctca |
665 |
Q |
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|||||||||| |||||||||| |||||||||||| |||| ||||| |||| |||||| |||| |||||||||| |||||||||||||||||| ||||||| |
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| T |
16582 |
acgactcatgacatgaaaactcatacacattccaaacatccattgtttaa-catcctcaaagtctcctccaaagccataaacaaactccaattactctca |
16484 |
T |
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| Q |
666 |
tgggcttt |
673 |
Q |
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||||||| |
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| T |
16483 |
agggcttt |
16476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 576 - 724
Target Start/End: Original strand, 19287652 - 19287800
Alignment:
| Q |
576 |
gcatgaaaactgatacacattccacacatacattgcttaagcatccttaaagactcctccaaaaccataaacaaactccaatcactctcatgggcttttc |
675 |
Q |
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||||||||||| ||||||||| ||||||| ||||| |||| |||||| ||||||||||||||| ||||||| |||||||||||||||||| ||||||| | |
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| T |
19287652 |
gcatgaaaactcatacacatttcacacatccattgtttaaccatcctcaaagactcctccaaagccataaataaactccaatcactctcaagggctttcc |
19287751 |
T |
|
| Q |
676 |
gtattctacttttctatttttcagtatgaaggtgtagcgacttaagatg |
724 |
Q |
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|||| || ||| | || |||||| ||||||||| ||||||||||| |
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| T |
19287752 |
gtatcgtattttcccgttcgtcagtactaaggtgtagtgacttaagatg |
19287800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 335 - 390
Target Start/End: Original strand, 19283880 - 19283935
Alignment:
| Q |
335 |
catcttttaatgcctgagacaatgcaaaacgacaactttgaggaatactcttcaca |
390 |
Q |
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| T |
19283880 |
catcttttaatgcctgagagaatgcaagatgacaactatgaggaacactcttcaca |
19283935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 124 - 409
Target Start/End: Complemental strand, 10946761 - 10946476
Alignment:
| Q |
124 |
aacacactacaaaccaacttggcgaaaccataaacttatctccatttagccaagcaatccaaagtatgatgttgttgtaaggagttccgattta--caaa |
221 |
Q |
| |
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||||||||| ||||||||||||||||||| | | ||| ||||||||||| ||||||| ||| | ||||||||| ||| ||||| ||||||||| || | |
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| T |
10946761 |
aacacactataaaccaacttggcgaaaccgtcagcttttctccatttagtcaagcaacccagaatatgatgttattgcaaggacttccgatttttccaga |
10946662 |
T |
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| Q |
222 |
cttgcgatcttccctaatataaggcttaaacacatgtaaagtacaacgagggagcaataatgaccagacctagggtcctactaaacctggatcagcaacc |
321 |
Q |
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| T |
10946661 |
ccgccaatctttcctagtttgaggctaaaatgcatgtaatgtgcaacgaggaagcaataacaact-gaactcgga-cctacagaacctggatcaacaatc |
10946564 |
T |
|
| Q |
322 |
acccgataaagagcatcttttaatgcctgagacaatgcaaaacgacaactttgaggaatactcttcacaataaagataggtacttgga |
409 |
Q |
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|||| |||||||||||||||||||| |||||| ||||||| | |||||| ||||||||||| |||| | ||||||||||| |||| |
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| T |
10946563 |
acccaataaagagcatcttttaatgtctgagagaatgcaagataacaactatgaggaatactgttcatagggaagataggtacatgga |
10946476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 473 - 657
Target Start/End: Original strand, 49531 - 49715
Alignment:
| Q |
473 |
ttttatagatggttttaaaatatgtacaatgtgactcgtgacctcccctgtctcattagtaagatgaaccataccattagaataatgacatgcacgactc |
572 |
Q |
| |
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|||| ||| ||||||| ||||||||| |||||| ||| | | ||| | |||||||||||||| | ||||| ||||| || | ||||||||||| ||| |
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| T |
49531 |
ttttctagttggttttgaaatatgtagaatgtggctcttaaactctcatgtctcattagtaacacaaaccagaccatcagggtggtgacatgcacggctc |
49630 |
T |
|
| Q |
573 |
atggcatgaaaactgatacacattccacacatacattgcttaagcatccttaaagactcctccaaaaccataaacaaactccaat |
657 |
Q |
| |
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|||| ||||||| | |||||| ||||| | || ||||||| || |||||| | ||||| || || |||||||||||||||||| |
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| T |
49631 |
atggtatgaaaatttatacaccttccaaatatccattgctcaaccatcctcatagacttttcaaacgccataaacaaactccaat |
49715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 536 - 650
Target Start/End: Complemental strand, 35149746 - 35149632
Alignment:
| Q |
536 |
atgaaccataccattagaataatgacatgcacgactcatggcatgaaaactgatacacattccacacatacattgcttaagcatccttaaagactcctcc |
635 |
Q |
| |
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|||||| | ||||| || || ||||||||| |||||||||||||||||| ||||| ||||| |||| |||||| || |||| | |||||||||||| |
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| T |
35149746 |
atgaactagaccatcaggatgatgacatgcgttactcatggcatgaaaactcatacattttccaaacattcattgcgcaaccatcttcaaagactcctcc |
35149647 |
T |
|
| Q |
636 |
aaaaccataaacaaa |
650 |
Q |
| |
|
|| |||||||||||| |
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|
| T |
35149646 |
aacaccataaacaaa |
35149632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 35127957 - 35127908
Alignment:
| Q |
320 |
ccacccgataaagagcatcttttaatgcctgagacaatgcaaaacgacaa |
369 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||| ||||||| ||||||| |
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| T |
35127957 |
ccacctgataaagagcatcttttaatgcatgagagaatgcaagacgacaa |
35127908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 557 - 619
Target Start/End: Complemental strand, 6819543 - 6819482
Alignment:
| Q |
557 |
atgacatgcacgactcatggcatgaaaactgatacacattccacacatacattgcttaagcat |
619 |
Q |
| |
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||||||||||||||| ||| || |||||| |||||||||||||||| |||||||||||||| |
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| T |
6819543 |
atgacatgcacgacttatgacac-aaaactcttacacattccacacattcattgcttaagcat |
6819482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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