View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4865-Insertion-6 (Length: 465)
Name: NF4865-Insertion-6
Description: NF4865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4865-Insertion-6 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 7 - 465
Target Start/End: Original strand, 4324775 - 4325233
Alignment:
| Q |
7 |
attaacaaagaatcccttttagcatctgcaaaaaatggtttggctgtaaagattcttagcaagggaaaagaggtgcctgatgaacctgtaattgacaaca |
106 |
Q |
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| T |
4324775 |
attaacaaagaatcccttttagcatctgcaaaaaatggtttggctgtaaagattcttagcaagggaaaagaggtgcctgatgaacctgtaattgacaaca |
4324874 |
T |
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| Q |
107 |
aaagaaacctgcaaaaaggttagggctcgtttaatgattgatattgttcacgttacactctaaagtgagttgcgtactttagagttcgagctcaaaatga |
206 |
Q |
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| T |
4324875 |
aaagaaacctgcaaaaaggttagggctcgtttagtgattgatattgttcacgttacactctaaagtgagttgcgtactttagagttcgagttcaaaatga |
4324974 |
T |
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| Q |
207 |
aatgaaacttgatggttgtaatctgcaggatgggaaagaatggttctacaaatcttgtttcttggtcctgctaatcttttggagcctaatgccagctttg |
306 |
Q |
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| T |
4324975 |
aatgaaacttgatggttgtaatctgcaggatgggaaagaatggttctacaaatcttgtttcttggtcctgctaatcttttggagcctaatgccagctttg |
4325074 |
T |
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| Q |
307 |
aacaaatgtcagagaagttgattgtttcacctatcgtcaagactctggtcttcagcaaagttcctgaaaaggtaatatctttctgtcgtatcactacatt |
406 |
Q |
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| T |
4325075 |
aacaaatgtcagagaagttgattgtttcacctatcgtcaagactctggtcttcagcaaagttcctgaaaaggtaatatctttctgtcgtatcactgcatt |
4325174 |
T |
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| Q |
407 |
tccactaatcaaattgcgatctagttatacctaatatagtgttagggcctgtttggatt |
465 |
Q |
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| T |
4325175 |
tccactaatcaaattgctatctagttatacctaatatagtgttagggcctgtttggatt |
4325233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 179
Target Start/End: Complemental strand, 37757482 - 37757440
Alignment:
| Q |
137 |
ttaatgattgatattgttcacgttacactctaaagtgagttgc |
179 |
Q |
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| T |
37757482 |
ttaacgattgatattattcactttacactctaaagtgagttgc |
37757440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 179
Target Start/End: Complemental strand, 37763230 - 37763188
Alignment:
| Q |
137 |
ttaatgattgatattgttcacgttacactctaaagtgagttgc |
179 |
Q |
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| T |
37763230 |
ttaacgattgatattattcactttacactctaaagtgagttgc |
37763188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 25584053 - 25584001
Alignment:
| Q |
137 |
ttaatgattgatattgttcacgttacactctaaagtgagttgcgtactttaga |
189 |
Q |
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| T |
25584053 |
ttaatggttgatattactcactttacactctaaagtgagttgctcactttaga |
25584001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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