View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4865-Insertion-8 (Length: 704)

Name: NF4865-Insertion-8
Description: NF4865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4865-Insertion-8
NF4865-Insertion-8
[»] chr6 (3 HSPs)
chr6 (7-697)||(7006229-7006919)
chr6 (36-351)||(7009669-7009987)
chr6 (408-645)||(7009362-7009602)
[»] chr7 (12 HSPs)
chr7 (152-279)||(1358338-1358465)
chr7 (148-279)||(1373725-1373856)
chr7 (152-279)||(1384086-1384213)
chr7 (152-279)||(1390191-1390318)
chr7 (152-281)||(1394435-1394564)
chr7 (152-279)||(1350432-1350559)
chr7 (524-580)||(1393729-1393785)
chr7 (524-580)||(1350118-1350174)
chr7 (524-580)||(1358073-1358129)
chr7 (524-580)||(1373416-1373472)
chr7 (524-579)||(1383693-1383748)
chr7 (524-579)||(1389798-1389853)


Alignment Details
Target: chr6 (Bit Score: 546; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 7 - 697
Target Start/End: Complemental strand, 7006919 - 7006229
Alignment:
Q  7 ataaatgtatacaataaagtggctagtataaaatctaattgattgtatgtgtaaaaaagtttttcaccgatagtgtatagtacttaaactctaaattaag 106  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7006919 ataaatgtatgcaataaagtggctagtataaaatctaattgattgtatgtgtaaaaaagtttttcaccgatagtgtatagtacttaaactctaaattaag 7006820  T
Q  107 aagaagnnnnnnngttgcaatgtaaatagattaacctcaagctcaaattccaaacaaggaacccatcccttcctgataaggtattctacttccttagcca 206  Q
    ||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7006819 aagaagaaaaaaagttgcaatgtaaatagattaacctcaagctcaaattccaaacaaggaacccatcccttcctgataaggtattctacttccttagcca 7006720  T
Q  207 attgttcctcagtaaggggtggaaggtaagaaagtgtctcaaacttcttcttgccaattggtggccacacctataaatattatacataaaattgagtatt 306  Q
    |||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7006719 attgatcctcagtaaggggtggaaggtatgaaagtgtttcaaacttcttcttgccaattggtggccaaacctataaatattatacataaaattgagtatt 7006620  T
Q  307 agggttaacaaaatttgataatcattaataattatgtcaactttgtagataaattttttctagaattatagtccnnnnnnnnnnnnnnnngtgacattct 406  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||    
T  7006619 agggttaacaaaatttgacaatcattaataattatgtcaactttgtagataaattttttctagaattatagtcc-aattttttttcttttgtgacattct 7006521  T
Q  407 a-tttttatgacatgaatcataatttaagtaaccttaaggtacataaatatgtaacataacatgaaattaaattttatatggtatatacaaaaatatgga 505  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7006520 attttttatgacatgaatcataatttaagtaaccttaaggtacataaatatgtaacataacatgaaattaaattttatatggtatatacaaaaatatgga 7006421  T
Q  506 ctagggcttaggtgtattacctgcatacagttcactcttccaccattgcttgcaagggaggtaatgtcattgttggtctttttggtaactgggaaagcag 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||| ||||| ||||||||| |||    
T  7006420 ctagggcttaggtgtattacctgcatacagttcactcttccaccattgcttgtgatggaggtaatgtcattgttggtcttcttggtcactgggaaaccag 7006321  T
Q  606 ctgaggatttgagaccgatgaatggagcaaccaagttggcggagacgcggttaacggtggcgacagaggcggaggagatcaaagccattttt 697  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  7006320 ctgaggatttgagaccggtgaatggagcaaccaagttagcggagacgcggttaacggtggtgacagcggcggaggagatcaaagccattttt 7006229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 36 - 351
Target Start/End: Complemental strand, 7009987 - 7009669
Alignment:
Q  36 aaaatctaattgattgtatgtgtaaaaaagtttttcaccgatagtgtatagtacttaaactctaaattaagaag-aagnnnnnnng--ttgcaatgtaaa 132  Q
    ||||||| |||| ||||||||||||||||||||||| ||||   |||||| |||||||||||||| |||| ||| |||       |  ||||||||||||    
T  7009987 aaaatctgattggttgtatgtgtaaaaaagtttttcgccgacgatgtataatacttaaactctaatttaaaaaggaagaaagaaaggattgcaatgtaaa 7009888  T
Q  133 tagattaacctcaagctcaaattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattgttcctcagtaaggggtggaagg 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7009887 tagattaacctcaagctcaaattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattgttcctcagtaagaggtggaagg 7009788  T
Q  233 taagaaagtgtctcaaacttcttcttgccaattggtggccacacctataaatattatacataaaattgagtattagggttaacaaaatttgataatcatt 332  Q
    || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| | |||||||||||||||||||||| | |  |     
T  7009787 tatgaaagtgtctcaaacttcttcttgccaattggtggccacacctagaaatattatacatataattcattattagggttaacaaaatttgacagtttta 7009688  T
Q  333 aataattatgtcaactttg 351  Q
    | |||||||||||||||||    
T  7009687 attaattatgtcaactttg 7009669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 408 - 645
Target Start/End: Complemental strand, 7009602 - 7009362
Alignment:
Q  408 tttttatgacatgaatcataatttaagtaaccttaaggtacataaatatgtaacataacatgaaattaaatt----ttatatggtatatacaaaaatatg 503  Q
    |||| |||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    ||  ||||  ||| ||||||||||    
T  7009602 ttttcatgacaagaataataatttaagtaaccttaaggtacatacatatgtaacataacatgaaattcaattaatttttgatggggtatgcaaaaatatg 7009503  T
Q  504 gactagggcttaggtgtattacctgcatacagttcactcttccaccattgcttgcaagggaggtaatgtcattgttggtctttttggtaactgggaaagc 603  Q
    || || || |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7009502 gattatggattag-tgtattacctgcatacagttcactcttccaccattgcttgcaatggaggtaatgtcattgttggtctttttggtaactgggaaagc 7009404  T
Q  604 agctgaggatttgagaccgatgaatggagcaaccaagttggc 645  Q
    ||||||||||||||||||| ||||||| ||||||||||||||    
T  7009403 agctgaggatttgagaccggtgaatggggcaaccaagttggc 7009362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 152 - 279
Target Start/End: Complemental strand, 1358465 - 1358338
Alignment:
Q  152 aattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattgttcctcagtaaggggtggaaggtaagaaagtgtctcaaact 251  Q
    |||||||| |||| ||||||||||||||| ||||||||||| ||||| || |||||||||||    || |  ||||||||||| ||||||||||||||||    
T  1358465 aattccaagcaagcaacccatcccttccttataaggtattcaacttctttggccaattgttctctggtcaatggtggaaggtatgaaagtgtctcaaact 1358366  T
Q  252 tcttcttgccaattggtggccacaccta 279  Q
    ||||||||||||| || |||||||||||    
T  1358365 tcttcttgccaataggaggccacaccta 1358338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 148 - 279
Target Start/End: Complemental strand, 1373856 - 1373725
Alignment:
Q  148 ctcaaattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattgttcctcagtaaggggtggaaggtaagaaagtgtctca 247  Q
    |||||||||||| |||| ||||||||||||||| ||||||||||| ||||| || |||||||||||    || |  |||||||| || ||||| ||||||    
T  1373856 ctcaaattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctggtcaatggtggaagatatgaaagagtctca 1373757  T
Q  248 aacttcttcttgccaattggtggccacaccta 279  Q
    ||||||||||||||||| || |||||||||||    
T  1373756 aacttcttcttgccaataggaggccacaccta 1373725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 152 - 279
Target Start/End: Complemental strand, 1384213 - 1384086
Alignment:
Q  152 aattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattgttcctcagtaaggggtggaaggtaagaaagtgtctcaaact 251  Q
    |||||||| |||| ||||||||||||||| ||||||||||| ||||| || |||||||||||    || |  ||||||||||| ||||| ||||||||||    
T  1384213 aattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctggtcaatggtggaaggtatgaaagagtctcaaact 1384114  T
Q  252 tcttcttgccaattggtggccacaccta 279  Q
    ||||||||||||| || |||||||||||    
T  1384113 tcttcttgccaataggaggccacaccta 1384086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 152 - 279
Target Start/End: Complemental strand, 1390318 - 1390191
Alignment:
Q  152 aattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattgttcctcagtaaggggtggaaggtaagaaagtgtctcaaact 251  Q
    |||||||| |||| ||||||||||||||| ||||||||||| ||||| || |||||||||||    || |  ||||||||||| ||||| ||||||||||    
T  1390318 aattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctggtcaatggtggaaggtatgaaagagtctcaaact 1390219  T
Q  252 tcttcttgccaattggtggccacaccta 279  Q
    ||||||||||||| || |||||||||||    
T  1390218 tcttcttgccaataggaggccacaccta 1390191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 152 - 281
Target Start/End: Complemental strand, 1394564 - 1394435
Alignment:
Q  152 aattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattgttcctcagtaaggggtggaaggtaagaaagtgtctcaaact 251  Q
    |||||||| |||| ||||||||||||||| ||||||||||| ||||| || |||||||||||    || |  |||||||| || ||||| ||||||||||    
T  1394564 aattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctggtcaatggtggaagatatgaaagagtctcaaact 1394465  T
Q  252 tcttcttgccaattggtggccacacctata 281  Q
    ||||||||||||| || |||||||||||||    
T  1394464 tcttcttgccaataggaggccacacctata 1394435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 152 - 279
Target Start/End: Complemental strand, 1350559 - 1350432
Alignment:
Q  152 aattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattgttcctcagtaaggggtggaaggtaagaaagtgtctcaaact 251  Q
    |||||||| |||| ||||||||||||||| ||||||||||| ||||| || |||||||||||    || |  |||||||| || ||||| ||||||||||    
T  1350559 aattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctggtcaatggtggaagatatgaaagagtctcaaact 1350460  T
Q  252 tcttcttgccaattggtggccacaccta 279  Q
    ||||||||||||| || |||||||||||    
T  1350459 tcttcttgccaataggaggccacaccta 1350432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 524 - 580
Target Start/End: Complemental strand, 1393785 - 1393729
Alignment:
Q  524 acctgcatacagttcactcttccaccattgcttgcaagggaggtaatgtcattgttg 580  Q
    |||||||| ||||| ||||||||||||||||||| || |||||||||||| ||||||    
T  1393785 acctgcatgcagtttactcttccaccattgcttgtaatggaggtaatgtctttgttg 1393729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 524 - 580
Target Start/End: Complemental strand, 1350174 - 1350118
Alignment:
Q  524 acctgcatacagttcactcttccaccattgcttgcaagggaggtaatgtcattgttg 580  Q
    |||||||| ||||| |||||||| |||||||||| || |||||||||||| ||||||    
T  1350174 acctgcatgcagtttactcttccgccattgcttgtaatggaggtaatgtctttgttg 1350118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 524 - 580
Target Start/End: Complemental strand, 1358129 - 1358073
Alignment:
Q  524 acctgcatacagttcactcttccaccattgcttgcaagggaggtaatgtcattgttg 580  Q
    |||||||| ||||| ||||||||||||||||||| ||  ||||||||||| ||||||    
T  1358129 acctgcatgcagtttactcttccaccattgcttgtaatagaggtaatgtccttgttg 1358073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 524 - 580
Target Start/End: Complemental strand, 1373472 - 1373416
Alignment:
Q  524 acctgcatacagttcactcttccaccattgcttgcaagggaggtaatgtcattgttg 580  Q
    |||||||| ||||| |||||||| |||||||||| || |||||||||||| ||||||    
T  1373472 acctgcatgcagtttactcttccgccattgcttgtaatggaggtaatgtctttgttg 1373416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 524 - 579
Target Start/End: Complemental strand, 1383748 - 1383693
Alignment:
Q  524 acctgcatacagttcactcttccaccattgcttgcaagggaggtaatgtcattgtt 579  Q
    |||||||| ||||| ||||||||||||||||||| || ||| |||||||| |||||    
T  1383748 acctgcatgcagtttactcttccaccattgcttgtaatggaagtaatgtctttgtt 1383693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 524 - 579
Target Start/End: Complemental strand, 1389853 - 1389798
Alignment:
Q  524 acctgcatacagttcactcttccaccattgcttgcaagggaggtaatgtcattgtt 579  Q
    |||||||| ||||| ||||||||||||||||||| || ||| |||||||| |||||    
T  1389853 acctgcatgcagtttactcttccaccattgcttgtaatggaagtaatgtctttgtt 1389798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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