View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4865-Insertion-9 (Length: 626)
Name: NF4865-Insertion-9
Description: NF4865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4865-Insertion-9 |
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Alignment Details
Target: chr7 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 46 - 522
Target Start/End: Complemental strand, 24628922 - 24628446
Alignment:
| Q |
46 |
ttaaattacctggtgaatgagcataagtataacagcaccatcacgccatccatttttaggtaggagagagaaagcattagaatggttaagaagttcatct |
145 |
Q |
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| T |
24628922 |
ttaaattacctgatgaatgagcataagtataacagcaccatcacgccatccatttttaggtaggagagagaaagcattggaatggttaagaagttcatct |
24628823 |
T |
|
| Q |
146 |
ccaaaggcccaataaacagcagtggcagaaggaatcgttaatgtgaaaacgtataaagttgccatcaaatatatgtacttgaatttttgtggcttccaca |
245 |
Q |
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| T |
24628822 |
ccaaaggcccaataaacagcagtggcagaaggaatcgttaatgtgaaaacgtataaagttgccatcaaatatatgtacttgaatttttgtggcttccaca |
24628723 |
T |
|
| Q |
246 |
tggcgtgcataatctctctgcaacatttacannnnnnnnnnnncattcagatcatatggaataatcacaatagttggtcacattggaatttctataaaca |
345 |
Q |
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| T |
24628722 |
tggcgtgcataatctctctgcaacatttacattttttctttttcattcagatcatatggaataatcacaataattggtcacattggaatttctataaaca |
24628623 |
T |
|
| Q |
346 |
gataaagaaaattaaagtcacttttgtttactctcttggcactattaccactttgtttttacttagattacaaaatggggacactagtagtctagtacaa |
445 |
Q |
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| T |
24628622 |
gataaagaaaattaaagtcacttttgtttactctcttggcactattaccactttgtttttacttagattacaaaatggggacactagtagtctagtacaa |
24628523 |
T |
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| Q |
446 |
tacaatgggagtgggagccagccaaacatcatatcatcatatagtttaaataatatttagattagataaaattgaca |
522 |
Q |
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| T |
24628522 |
tacaatgggagtgggagccagccaaacatcatatcatcatatagtttaaataatatttagattagataaaattgaca |
24628446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 556 - 625
Target Start/End: Complemental strand, 24628422 - 24628353
Alignment:
| Q |
556 |
tacattatttaattacttgatactccatcttagcaatataatattagatgtagtttagttggtcataaca |
625 |
Q |
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| T |
24628422 |
tacattatttaattacttgatactccatcttagcaatataatattagatgtagtttagttggtcataaca |
24628353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 53 - 268
Target Start/End: Complemental strand, 4534957 - 4534742
Alignment:
| Q |
53 |
acctggtgaatgagcataagtataacagcaccatcacgccatccatttttaggtaggagagagaaagcattagaatggttaagaagttcatctccaaagg |
152 |
Q |
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||||| ||||||||||| || ||||| ||| ||||||| |||||||||| || || |||||||||||||| |||||||| | | |||||| ||||| | |
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| T |
4534957 |
acctgatgaatgagcatgaggataacggcagcatcacggaatccatttttgggaagaagagagaaagcattggaatggtttaacaattcatcaccaaaag |
4534858 |
T |
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| Q |
153 |
cccaataaacagcagtggcagaaggaatcgttaatgtgaaaacgtataaagttgccatcaaatatatgtacttgaatttttgtggcttccacatggcgtg |
252 |
Q |
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|||| ||||| ||| || |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||| || |||||||| || || |
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| T |
4534857 |
cccagtaaacggcaacagctgaaggaatcgttaatgtgaaaacgtacaaagttgccagaaaatatatgtacttgaacttttgaggtttccacattgcatg |
4534758 |
T |
|
| Q |
253 |
cataatctctctgcaa |
268 |
Q |
| |
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|||||||||||||||| |
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| T |
4534757 |
cataatctctctgcaa |
4534742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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