View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4865_high_3 (Length: 339)
Name: NF4865_high_3
Description: NF4865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4865_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 22 - 324
Target Start/End: Original strand, 32715624 - 32715920
Alignment:
| Q |
22 |
catatgccgataattctaaaaatgaattaattaaaggtaaatgaattttatgtgcgacagacacgacatcagacacaacactaacacaaacattcgatca |
121 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32715624 |
catacgccgataattctaaaaatgaattaattaaa------tgaattttatgtgcgacagacacgacatcagacacaacactaacacaaacattcgatca |
32715717 |
T |
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| Q |
122 |
aaagtgttggtgctataaagagggtattacattacatatactnnnnnnngcaaataaacaaatgcaaataaacagtaggccaaattgaggtgcatccccc |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32715718 |
aaagtgttggtgctataaagagggtattacattacatatactaacaaaagcaaataaacaaatgcaaataaatagtaggccaaattgaggtgcatccccc |
32715817 |
T |
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| Q |
222 |
aaagctaaaaatggaaagatgtaaaggaaacagttacattgggctacaacttagaagctaaatacacaattatataatgcacttctattaaaagagaata |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32715818 |
aaagctaaaaatggaaagatgtaaaggaaacagttacatggggctacaacttagaagctaaatacacaattatataatgcacttctattaaaacagaata |
32715917 |
T |
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