View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4865_high_7 (Length: 251)

Name: NF4865_high_7
Description: NF4865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4865_high_7
NF4865_high_7
[»] chr2 (5 HSPs)
chr2 (58-251)||(34327456-34327649)
chr2 (26-61)||(31368459-31368494)
chr2 (26-61)||(38977779-38977814)
chr2 (26-59)||(36555158-36555191)
chr2 (26-58)||(20283905-20283937)
[»] chr4 (32 HSPs)
chr4 (27-61)||(18733422-18733456)
chr4 (27-59)||(45287416-45287448)
chr4 (26-61)||(3005938-3005973)
chr4 (26-61)||(8085656-8085691)
chr4 (26-61)||(8085880-8085915)
chr4 (26-61)||(8087265-8087300)
chr4 (26-61)||(19511854-19511889)
chr4 (26-61)||(22452605-22452640)
chr4 (26-61)||(22458528-22458563)
chr4 (26-61)||(22459235-22459270)
chr4 (26-61)||(31990309-31990344)
chr4 (26-61)||(36970355-36970390)
chr4 (26-61)||(56206003-56206038)
chr4 (26-61)||(56207887-56207922)
chr4 (27-61)||(19510086-19510120)
chr4 (27-61)||(19510308-19510342)
chr4 (27-61)||(19510788-19510822)
chr4 (27-61)||(19511222-19511256)
chr4 (27-61)||(40631381-40631415)
chr4 (27-61)||(44234140-44234174)
chr4 (27-61)||(44234362-44234396)
chr4 (26-56)||(45287266-45287296)
chr4 (28-61)||(12686745-12686778)
chr4 (28-61)||(12686911-12686944)
chr4 (28-61)||(18690502-18690535)
chr4 (28-61)||(19510489-19510522)
chr4 (28-61)||(22459629-22459662)
chr4 (28-61)||(50946734-50946767)
chr4 (26-58)||(7314586-7314618)
chr4 (27-59)||(18665006-18665038)
chr4 (27-63)||(36970533-36970569)
chr4 (29-61)||(50946674-50946706)
[»] chr3 (21 HSPs)
chr3 (27-59)||(55347881-55347913)
chr3 (26-61)||(7049557-7049592)
chr3 (26-61)||(13276571-13276606)
chr3 (26-61)||(13278025-13278060)
chr3 (26-61)||(13278491-13278526)
chr3 (26-61)||(13280077-13280112)
chr3 (26-61)||(13281478-13281513)
chr3 (26-61)||(13281598-13281633)
chr3 (26-61)||(13281718-13281753)
chr3 (26-61)||(29452276-29452311)
chr3 (26-61)||(31166392-31166427)
chr3 (26-61)||(41719284-41719319)
chr3 (26-61)||(41719404-41719439)
chr3 (26-61)||(52787307-52787342)
chr3 (26-61)||(53252506-53252541)
chr3 (27-61)||(4606169-4606203)
chr3 (27-61)||(7049437-7049471)
chr3 (27-61)||(41285239-41285273)
chr3 (27-61)||(49849525-49849559)
chr3 (27-61)||(52793571-52793605)
chr3 (26-59)||(41719226-41719259)
[»] chr1 (15 HSPs)
chr1 (25-61)||(45311799-45311835)
chr1 (26-61)||(7879151-7879186)
chr1 (26-61)||(7879571-7879606)
chr1 (26-61)||(14753863-14753898)
chr1 (26-61)||(27274281-27274316)
chr1 (26-61)||(45311980-45312015)
chr1 (26-61)||(48188090-48188125)
chr1 (27-61)||(14753248-14753282)
chr1 (27-61)||(14753367-14753401)
chr1 (27-61)||(20360946-20360980)
chr1 (27-61)||(20549990-20550024)
chr1 (27-61)||(28728307-28728341)
chr1 (28-61)||(7879331-7879364)
chr1 (28-61)||(20361292-20361325)
chr1 (28-61)||(20549585-20549618)
[»] scaffold0136 (1 HSPs)
scaffold0136 (26-61)||(11850-11885)
[»] scaffold0087 (3 HSPs)
scaffold0087 (26-61)||(9013-9048)
scaffold0087 (26-61)||(9359-9394)
scaffold0087 (27-61)||(9300-9334)
[»] scaffold0063 (2 HSPs)
scaffold0063 (26-61)||(2317-2352)
scaffold0063 (26-61)||(2497-2532)
[»] chr8 (7 HSPs)
chr8 (26-61)||(23675104-23675139)
chr8 (26-61)||(43204963-43204998)
chr8 (26-61)||(43205221-43205256)
chr8 (27-61)||(34323759-34323793)
chr8 (27-61)||(42576713-42576747)
chr8 (29-61)||(19383213-19383245)
chr8 (26-62)||(40673697-40673733)
[»] chr7 (9 HSPs)
chr7 (26-61)||(2130768-2130803)
chr7 (26-61)||(2131233-2131268)
chr7 (26-61)||(2133181-2133216)
chr7 (26-61)||(9195151-9195186)
chr7 (26-61)||(20538714-20538749)
chr7 (26-61)||(27748259-27748294)
chr7 (26-61)||(27748478-27748513)
chr7 (27-61)||(11562732-11562766)
chr7 (28-61)||(27748141-27748174)
[»] chr6 (5 HSPs)
chr6 (26-61)||(5402143-5402178)
chr6 (26-61)||(5402427-5402462)
chr6 (26-61)||(5402711-5402746)
chr6 (26-61)||(28509109-28509144)
chr6 (26-61)||(29730961-29730996)
[»] chr5 (13 HSPs)
chr5 (26-61)||(6617281-6617316)
chr5 (26-61)||(6617567-6617602)
chr5 (26-61)||(6619028-6619063)
chr5 (26-61)||(6619389-6619424)
chr5 (26-61)||(6619610-6619645)
chr5 (26-61)||(6619832-6619867)
chr5 (26-61)||(10377662-10377697)
chr5 (26-61)||(21572730-21572765)
chr5 (26-61)||(24075717-24075752)
chr5 (26-61)||(24076953-24076988)
chr5 (26-61)||(42379849-42379884)
chr5 (27-61)||(42380500-42380534)
chr5 (29-61)||(23101416-23101448)


Alignment Details
Target: chr2 (Bit Score: 154; Significance: 9e-82; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 58 - 251
Target Start/End: Original strand, 34327456 - 34327649
Alignment:
Q  58 cttagtctatgggtcggtttaagattcacctgtgtgtcaatgtatggaaggttttaaacctaagttgcctcaagtgtggtattccatggattggtctaat 157  Q
    ||||||||| ||| | |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  34327456 cttagtctacgggccagtttcagattcacctgtgtgtcaatgtatggaaggttttaaacctaagtcgcctcaagcgtggtattccatggattggtctaat 34327555  T
Q  158 ggatgcaatcgaaataaggcattgcgttgcaaggaaaaaagcaaggatggatttgtgaaattgagtggtatgaaagggcctgacaccacagata 251  Q
    ||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34327556 ggatgcgttcgaaataaggcattgcgttgcgaggaaaaaagcaaggatggatttgtgaaattgagtggtatgaaaggacctgacaccacagata 34327649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 31368494 - 31368459
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  31368494 tctctttttcaaaaacagcttattcaaaacagctta 31368459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 38977814 - 38977779
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  38977814 tctctttttcaaaaacagcttattcaaaacagctta 38977779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 36555158 - 36555191
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagct 59  Q
    ||||||||||||||||||||||| ||||||||||    
T  36555158 tctctttttcaaaaacagcttattcaaaacagct 36555191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 20283905 - 20283937
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagc 58  Q
    ||||||||||||||||||||||| |||||||||    
T  20283905 tctctttttcaaaaacagcttattcaaaacagc 20283937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 18733456 - 18733422
Alignment:
Q  27 ctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    |||||||||||||||||||||||||||||||||||    
T  18733456 ctctttttcaaaaacagcttatgcaaaacagctta 18733422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 45287416 - 45287448
Alignment:
Q  27 ctctttttcaaaaacagcttatgcaaaacagct 59  Q
    |||||||||||||||||||||||||||||||||    
T  45287416 ctctttttcaaaaacagcttatgcaaaacagct 45287448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 3005973 - 3005938
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  3005973 tctctttttcaaaaacagcttattcaaaacagctta 3005938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 8085656 - 8085691
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  8085656 tctctttttcaaaaacagcttattcaaaacagctta 8085691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 8085880 - 8085915
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  8085880 tctctttttcaaaaacagcttattcaaaacagctta 8085915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 8087300 - 8087265
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  8087300 tctctttttcaaaaacagcttattcaaaacagctta 8087265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 19511889 - 19511854
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  19511889 tctctttttcaaaaacagcttattcaaaacagctta 19511854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 22452640 - 22452605
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  22452640 tctctttttcaaaaacagcttattcaaaacagctta 22452605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 22458528 - 22458563
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  22458528 tctctttttcaaaaacagcttattcaaaacagctta 22458563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 22459270 - 22459235
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  22459270 tctctttttcaaaaacagcttattcaaaacagctta 22459235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 31990344 - 31990309
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  31990344 tctctttttcaaaaacagcttattcaaaacagctta 31990309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 36970390 - 36970355
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  36970390 tctctttttcaaaaacagcttattcaaaacagctta 36970355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 56206003 - 56206038
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  56206003 tctctttttcaaaaacagcttattcaaaacagctta 56206038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 56207922 - 56207887
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  56207922 tctctttttcaaaaacagcttattcaaaacagctta 56207887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 19510086 - 19510120
Alignment:
Q  27 ctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    |||||||||||||||||||||| ||||||||||||    
T  19510086 ctctttttcaaaaacagcttattcaaaacagctta 19510120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 19510308 - 19510342
Alignment:
Q  27 ctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    |||||||||||||||||||||| ||||||||||||    
T  19510308 ctctttttcaaaaacagcttattcaaaacagctta 19510342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 19510788 - 19510822
Alignment:
Q  27 ctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    |||||||||||||||||||||| ||||||||||||    
T  19510788 ctctttttcaaaaacagcttattcaaaacagctta 19510822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 19511256 - 19511222
Alignment:
Q  27 ctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    |||||||||||||||||||||| ||||||||||||    
T  19511256 ctctttttcaaaaacagcttattcaaaacagctta 19511222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 40631415 - 40631381
Alignment:
Q  27 ctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    |||||||||||||||||||||| ||||||||||||    
T  40631415 ctctttttcaaaaacagcttattcaaaacagctta 40631381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 44234140 - 44234174
Alignment:
Q  27 ctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    |||||||||||||||||||||| ||||||||||||    
T  44234140 ctctttttcaaaaacagcttattcaaaacagctta 44234174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 44234396 - 44234362
Alignment:
Q  27 ctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    |||||||||||||||||||||| ||||||||||||    
T  44234396 ctctttttcaaaaacagcttattcaaaacagctta 44234362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 56
Target Start/End: Original strand, 45287266 - 45287296
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaaca 56  Q
    |||||||||||||||||||||||||||||||    
T  45287266 tctctttttcaaaaacagcttatgcaaaaca 45287296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 12686778 - 12686745
Alignment:
Q  28 tctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||| ||||||||||||    
T  12686778 tctttttcaaaaacagcttattcaaaacagctta 12686745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 12686944 - 12686911
Alignment:
Q  28 tctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||| ||||||||||||    
T  12686944 tctttttcaaaaacagcttattcaaaacagctta 12686911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 18690502 - 18690535
Alignment:
Q  28 tctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||| ||||||||||||    
T  18690502 tctttttcaaaaacagcttattcaaaacagctta 18690535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 19510489 - 19510522
Alignment:
Q  28 tctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||| ||||||||||||    
T  19510489 tctttttcaaaaacagcttattcaaaacagctta 19510522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 22459662 - 22459629
Alignment:
Q  28 tctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||| ||||||||||||    
T  22459662 tctttttcaaaaacagcttattcaaaacagctta 22459629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 50946734 - 50946767
Alignment:
Q  28 tctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||||||| ||||||    
T  50946734 tctttttcaaaaacagcttatgcaaaatagctta 50946767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 7314618 - 7314586
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagc 58  Q
    ||||||||||||||||||||||| |||||||||    
T  7314618 tctctttttcaaaaacagcttattcaaaacagc 7314586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 18665038 - 18665006
Alignment:
Q  27 ctctttttcaaaaacagcttatgcaaaacagct 59  Q
    ||||||||| |||||||||||||||||||||||    
T  18665038 ctctttttctaaaacagcttatgcaaaacagct 18665006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 36970569 - 36970533
Alignment:
Q  27 ctctttttcaaaaacagcttatgcaaaacagcttagt 63  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  36970569 ctctttttcaaaaatagcttattcaaaacagcttagt 36970533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 50946674 - 50946706
Alignment:
Q  29 ctttttcaaaaacagcttatgcaaaacagctta 61  Q
    |||||||||||||||||||| ||||||||||||    
T  50946674 ctttttcaaaaacagcttattcaaaacagctta 50946706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 55347881 - 55347913
Alignment:
Q  27 ctctttttcaaaaacagcttatgcaaaacagct 59  Q
    |||||||||||||||||||||||||||||||||    
T  55347881 ctctttttcaaaaacagcttatgcaaaacagct 55347913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 7049592 - 7049557
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  7049592 tctctttttcaaaaacagcttattcaaaacagctta 7049557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 13276571 - 13276606
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  13276571 tctctttttcaaaaacagcttattcaaaacagctta 13276606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 13278060 - 13278025
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  13278060 tctctttttcaaaaacagcttattcaaaacagctta 13278025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 13278526 - 13278491
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  13278526 tctctttttcaaaaacagcttattcaaaacagctta 13278491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 13280077 - 13280112
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  13280077 tctctttttcaaaaacagcttattcaaaacagctta 13280112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 13281513 - 13281478
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  13281513 tctctttttcaaaaacagcttattcaaaacagctta 13281478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 13281633 - 13281598
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  13281633 tctctttttcaaaaacagcttattcaaaacagctta 13281598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 13281753 - 13281718
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  13281753 tctctttttcaaaaacagcttattcaaaacagctta 13281718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 29452276 - 29452311
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  29452276 tctctttttcaaaaacagcttattcaaaacagctta 29452311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 31166427 - 31166392
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  31166427 tctctttttcaaaaacagcttattcaaaacagctta 31166392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 41719319 - 41719284
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  41719319 tctctttttcaaaaacagcttattcaaaacagctta 41719284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 41719439 - 41719404
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  41719439 tctctttttcaaaaacagcttattcaaaacagctta 41719404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 52787342 - 52787307
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  52787342 tctctttttcaaaaacagcttattcaaaacagctta 52787307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 53252506 - 53252541
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||||||||||| ||||    
T  53252506 tctctttttcaaaaacagcttatgcaaaacaactta 53252541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 4606203 - 4606169
Alignment:
Q  27 ctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    |||||||||||||||||||||| ||||||||||||    
T  4606203 ctctttttcaaaaacagcttattcaaaacagctta 4606169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 7049471 - 7049437
Alignment:
Q  27 ctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    |||||||||||||||||||||| ||||||||||||    
T  7049471 ctctttttcaaaaacagcttattcaaaacagctta 7049437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 41285239 - 41285273
Alignment:
Q  27 ctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    |||||||||||||||||||||| ||||||||||||    
T  41285239 ctctttttcaaaaacagcttattcaaaacagctta 41285273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 49849559 - 49849525
Alignment:
Q  27 ctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    |||||||||||||||||||||| ||||||||||||    
T  49849559 ctctttttcaaaaacagcttattcaaaacagctta 49849525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 52793605 - 52793571
Alignment:
Q  27 ctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    |||||||||||||||||||||| ||||||||||||    
T  52793605 ctctttttcaaaaacagcttattcaaaacagctta 52793571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 41719259 - 41719226
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagct 59  Q
    ||||||||||||||||||||||| ||||||||||    
T  41719259 tctctttttcaaaaacagcttattcaaaacagct 41719226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 45311799 - 45311835
Alignment:
Q  25 ttctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    |||||||||||||||||||||||| ||||||||||||    
T  45311799 ttctctttttcaaaaacagcttattcaaaacagctta 45311835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 7879186 - 7879151
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  7879186 tctctttttcaaaaacagcttattcaaaacagctta 7879151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 7879606 - 7879571
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  7879606 tctctttttcaaaaacagcttattcaaaacagctta 7879571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 14753898 - 14753863
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  14753898 tctctttttcaaaaacagcttattcaaaacagctta 14753863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 27274281 - 27274316
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  27274281 tctctttttcaaaaacagcttattcaaaacagctta 27274316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 45311980 - 45312015
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  45311980 tctctttttcaaaaacagcttattcaaaacagctta 45312015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 48188090 - 48188125
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  48188090 tctctttttcaaaaacagcttattcaaaacagctta 48188125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 14753248 - 14753282
Alignment:
Q  27 ctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    |||||||||||||||||||||| ||||||||||||    
T  14753248 ctctttttcaaaaacagcttattcaaaacagctta 14753282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 14753367 - 14753401
Alignment:
Q  27 ctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    |||||||||||||||||||||| ||||||||||||    
T  14753367 ctctttttcaaaaacagcttattcaaaacagctta 14753401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 20360946 - 20360980
Alignment:
Q  27 ctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    |||||||||||||||||||||| ||||||||||||    
T  20360946 ctctttttcaaaaacagcttattcaaaacagctta 20360980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 20550024 - 20549990
Alignment:
Q  27 ctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    |||||||||||||||||||||| ||||||||||||    
T  20550024 ctctttttcaaaaacagcttattcaaaacagctta 20549990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 28728307 - 28728341
Alignment:
Q  27 ctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    |||||||||||||||||||||| ||||||||||||    
T  28728307 ctctttttcaaaaacagcttattcaaaacagctta 28728341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 7879364 - 7879331
Alignment:
Q  28 tctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||| ||||||||||||    
T  7879364 tctttttcaaaaacagcttattcaaaacagctta 7879331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 20361292 - 20361325
Alignment:
Q  28 tctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||| ||||||||||||    
T  20361292 tctttttcaaaaacagcttattcaaaacagctta 20361325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 20549618 - 20549585
Alignment:
Q  28 tctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||| ||||||||||||    
T  20549618 tctttttcaaaaacagcttattcaaaacagctta 20549585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 11850 - 11885
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  11850 tctctttttcaaaaacagcttattcaaaacagctta 11885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 9013 - 9048
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  9013 tctctttttcaaaaacagcttattcaaaacagctta 9048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 9359 - 9394
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  9359 tctctttttcaaaaacagcttattcaaaacagctta 9394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 9300 - 9334
Alignment:
Q  27 ctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    |||||||||||||||||||||| ||||||||||||    
T  9300 ctctttttcaaaaacagcttattcaaaacagctta 9334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 2317 - 2352
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  2317 tctctttttcaaaaacagcttattcaaaacagctta 2352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 2497 - 2532
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  2497 tctctttttcaaaaacagcttattcaaaacagctta 2532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 23675104 - 23675139
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  23675104 tctctttttcaaaaacagcttattcaaaacagctta 23675139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 43204963 - 43204998
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  43204963 tctctttttcaaaaacagcttattcaaaacagctta 43204998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 43205221 - 43205256
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  43205221 tctctttttcaaaaacagcttattcaaaacagctta 43205256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 34323793 - 34323759
Alignment:
Q  27 ctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    |||||||||||||||||||||| ||||||||||||    
T  34323793 ctctttttcaaaaacagcttattcaaaacagctta 34323759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 42576713 - 42576747
Alignment:
Q  27 ctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    |||||||||||||||||||||| ||||||||||||    
T  42576713 ctctttttcaaaaacagcttattcaaaacagctta 42576747  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 19383213 - 19383245
Alignment:
Q  29 ctttttcaaaaacagcttatgcaaaacagctta 61  Q
    |||||||||||| ||||||||||||||||||||    
T  19383213 ctttttcaaaaatagcttatgcaaaacagctta 19383245  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 40673733 - 40673697
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagcttag 62  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  40673733 tctctttttcaaaaacagcttattcaaaacaacttag 40673697  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 2130768 - 2130803
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  2130768 tctctttttcaaaaacagcttattcaaaacagctta 2130803  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 2131233 - 2131268
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  2131233 tctctttttcaaaaacagcttattcaaaacagctta 2131268  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 2133216 - 2133181
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  2133216 tctctttttcaaaaacagcttattcaaaacagctta 2133181  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 9195186 - 9195151
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  9195186 tctctttttcaaaaacagcttattcaaaacagctta 9195151  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 20538749 - 20538714
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  20538749 tctctttttcaaaaacagcttattcaaaacagctta 20538714  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 27748259 - 27748294
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  27748259 tctctttttcaaaaacagcttattcaaaacagctta 27748294  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 27748513 - 27748478
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  27748513 tctctttttcaaaaacagcttattcaaaacagctta 27748478  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 11562732 - 11562766
Alignment:
Q  27 ctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    |||||||||||||||||||||| ||||||||||||    
T  11562732 ctctttttcaaaaacagcttattcaaaacagctta 11562766  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 27748141 - 27748174
Alignment:
Q  28 tctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||| ||||||||||||    
T  27748141 tctttttcaaaaacagcttattcaaaacagctta 27748174  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 5402143 - 5402178
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  5402143 tctctttttcaaaaacagcttattcaaaacagctta 5402178  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 5402427 - 5402462
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  5402427 tctctttttcaaaaacagcttattcaaaacagctta 5402462  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 5402711 - 5402746
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  5402711 tctctttttcaaaaacagcttattcaaaacagctta 5402746  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 28509144 - 28509109
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  28509144 tctctttttcaaaaacagcttattcaaaacagctta 28509109  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 29730961 - 29730996
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  29730961 tctctttttcaaaaacagcttattcaaaacagctta 29730996  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 6617316 - 6617281
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  6617316 tctctttttcaaaaacagcttattcaaaacagctta 6617281  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 6617602 - 6617567
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  6617602 tctctttttcaaaaacagcttattcaaaacagctta 6617567  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 6619028 - 6619063
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  6619028 tctctttttcaaaaacagcttattcaaaacagctta 6619063  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 6619424 - 6619389
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  6619424 tctctttttcaaaaacagcttattcaaaacagctta 6619389  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 6619645 - 6619610
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  6619645 tctctttttcaaaaacagcttattcaaaacagctta 6619610  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 6619867 - 6619832
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  6619867 tctctttttcaaaaacagcttattcaaaacagctta 6619832  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 10377662 - 10377697
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  10377662 tctctttttcaaaaacagcttattcaaaacagctta 10377697  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 21572730 - 21572765
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  21572730 tctctttttcaaaaacagcttattcaaaacagctta 21572765  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 24075717 - 24075752
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  24075717 tctctttttcaaaaacagcttattcaaaacagctta 24075752  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 24076988 - 24076953
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  24076988 tctctttttcaaaaacagcttattcaaaacagctta 24076953  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 42379849 - 42379884
Alignment:
Q  26 tctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    ||||||||||||||||||||||| ||||||||||||    
T  42379849 tctctttttcaaaaacagcttattcaaaacagctta 42379884  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 42380534 - 42380500
Alignment:
Q  27 ctctttttcaaaaacagcttatgcaaaacagctta 61  Q
    |||||||||||||||||||||| ||||||||||||    
T  42380534 ctctttttcaaaaacagcttattcaaaacagctta 42380500  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 23101448 - 23101416
Alignment:
Q  29 ctttttcaaaaacagcttatgcaaaacagctta 61  Q
    |||||||||||||||||||| ||||||||||||    
T  23101448 ctttttcaaaaacagcttattcaaaacagctta 23101416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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