View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4865_high_8 (Length: 250)

Name: NF4865_high_8
Description: NF4865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4865_high_8
NF4865_high_8
[»] chr4 (7 HSPs)
chr4 (1-246)||(36501814-36502059)
chr4 (3-129)||(24974097-24974223)
chr4 (3-123)||(12586749-12586868)
chr4 (3-127)||(55527864-55527988)
chr4 (22-127)||(45237414-45237519)
chr4 (52-124)||(34235704-34235776)
chr4 (85-127)||(628091-628133)
[»] chr8 (3 HSPs)
chr8 (3-127)||(5967188-5967312)
chr8 (3-127)||(34279512-34279636)
chr8 (38-127)||(31762244-31762333)
[»] chr3 (8 HSPs)
chr3 (1-127)||(15040684-15040810)
chr3 (1-127)||(19872090-19872216)
chr3 (3-129)||(7665734-7665860)
chr3 (3-129)||(34082840-34082966)
chr3 (26-127)||(53814535-53814636)
chr3 (25-123)||(39645781-39645879)
chr3 (66-123)||(40516981-40517038)
chr3 (82-127)||(35069476-35069521)
[»] chr7 (5 HSPs)
chr7 (4-129)||(5124-5249)
chr7 (3-126)||(38386178-38386301)
chr7 (3-130)||(38047646-38047773)
chr7 (22-127)||(19365365-19365470)
chr7 (54-127)||(5061730-5061803)
[»] chr5 (10 HSPs)
chr5 (3-109)||(5506642-5506748)
chr5 (22-127)||(34016005-34016110)
chr5 (3-127)||(759163-759287)
chr5 (3-127)||(28677889-28678013)
chr5 (6-124)||(6705989-6706107)
chr5 (75-127)||(17636347-17636399)
chr5 (3-70)||(30489783-30489850)
chr5 (83-127)||(6158973-6159017)
chr5 (83-124)||(17644631-17644672)
chr5 (60-104)||(33144192-33144236)
[»] chr1 (11 HSPs)
chr1 (3-124)||(33617650-33617771)
chr1 (3-110)||(33401428-33401535)
chr1 (22-127)||(28474795-28474900)
chr1 (53-124)||(28446531-28446602)
chr1 (53-127)||(39650199-39650273)
chr1 (3-47)||(33617911-33617955)
chr1 (3-110)||(35563380-35563479)
chr1 (7-127)||(48027051-48027171)
chr1 (51-127)||(50065481-50065557)
chr1 (3-103)||(35563532-35563624)
chr1 (53-127)||(28475983-28476057)
[»] chr6 (4 HSPs)
chr6 (6-127)||(17436495-17436616)
chr6 (22-110)||(4319104-4319192)
chr6 (22-124)||(32274190-32274292)
chr6 (22-100)||(31483673-31483751)
[»] chr2 (3 HSPs)
chr2 (22-127)||(8273248-8273353)
chr2 (85-129)||(11712959-11713003)
chr2 (83-124)||(38147103-38147144)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 36501814 - 36502059
Alignment:
Q  1 cacatgttaagtcacactacttatcttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatga 100  Q
    |||||||||||||||  |||||||||| ||||||| ||||||||||||| | |||||||||||||||||| | |||||| |||||||||||| |||||||    
T  36501814 cacatgttaagtcacgttacttatcttgagttacgttataatttgcaccagcgcatgtcaacatgcgtaggggcatttcgatcatttactttgggaatga 36501913  T
Q  101 gcgaatccatctaggtaatgagcagaaatatagttagtaaattttgcaaaaattggttgggcctatatcgggtgctccaagcccaatattcttcactgga 200  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  36501914 gcgaatccatctgggtaatgagcagaaatatagttagtaaattttgcaaaaattggttgggcctatatcgggtgctccaagcccaatattcttcagcgga 36502013  T
Q  201 gtgtagcattaaaccttgttttttagttcttcattctctgctcctc 246  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  36502014 gtgtagcattaaaccttgttttttagttcttcattttctgctcctc 36502059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 129
Target Start/End: Original strand, 24974097 - 24974223
Alignment:
Q  3 catgttaagtcacactacttatcttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagc 102  Q
    ||||||||||||| ||||||||||||||||||  ||||||||||||  | |||||| ||||||||||| | ||||||  ||||||||||| |||||||||    
T  24974097 catgttaagtcacgctacttatcttaagttacattataatttgcactagcgcatgttaacatgcgtaggggcatttcggtcatttactttgggaatgagc 24974196  T
Q  103 gaatccatctaggtaatgagcagaaat 129  Q
     ||||||| | | ||||||||||||||    
T  24974197 aaatccatttggataatgagcagaaat 24974223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 12586749 - 12586868
Alignment:
Q  3 catgttaagtcacactacttatcttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagc 102  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||  | |||||| ||||||||||| ||||||||  ||||||| ||| | |||||||    
T  12586749 catgttaagtcacgctacttatcttaagttacgttataatttgcactagcgcatgttaacatgcgtagggacatttcggtcattta-tttggaaatgagc 12586847  T
Q  103 gaatccatctaggtaatgagc 123  Q
    |||||||| |  |||||||||    
T  12586848 gaatccatttgagtaatgagc 12586868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 55527864 - 55527988
Alignment:
Q  3 catgttaagtcacactacttatcttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagc 102  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||  | || ||| ||||||||||| | ||||||  |||||| |||| | |||||||    
T  55527864 catgttaagtcacgctacttatcttaagttacgttataatttgcactagcgcgtgttaacatgcgtaggggcatttcggtcatttgctttggaaatgagc 55527963  T
Q  103 gaatccatctaggtaatgagcagaa 127  Q
    |||||||| ||  ||||||||||||    
T  55527964 gaatccatttaaataatgagcagaa 55527988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 45237519 - 45237414
Alignment:
Q  22 tatcttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagcgaatccatctaggtaatga 121  Q
    |||||||||||||| ||||||||||||  | |||||| ||||||| ||| | ||||||| | ||||||||||| ||| ||||||||||| |  |||||||    
T  45237519 tatcttaagttacgttataatttgcactagcgcatgttaacatgcataggggcatttcagttatttactttagaaataagcgaatccatttgagtaatga 45237420  T
Q  122 gcagaa 127  Q
    ||||||    
T  45237419 gcagaa 45237414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 34235704 - 34235776
Alignment:
Q  52 tgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagcgaatccatctaggtaatgagca 124  Q
    ||||||| ||||||||||  | ||||||  |||||||||||||||||||||| | |||| | |||||||||||    
T  34235704 tgcatgttaacatgcgtatgggcatttcggtcatttactttaggaatgagcggaaccatttgggtaatgagca 34235776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 127
Target Start/End: Complemental strand, 628133 - 628091
Alignment:
Q  85 tttactttaggaatgagcgaatccatctaggtaatgagcagaa 127  Q
    ||||||||||||||||||||| |||| | ||||||||||||||    
T  628133 tttactttaggaatgagcgaaaccatttgggtaatgagcagaa 628091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 5967188 - 5967312
Alignment:
Q  3 catgttaagtcacactacttatcttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagc 102  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||  | |||||| ||||||||||| | |||||| |||||||||||| |||||||||    
T  5967188 catgttaagtcacactacttatcttaagttacgttataatttgcactagcgcatgttaacatgcgtaggggcatttcgatcatttactttgggaatgagc 5967287  T
Q  103 gaatccatctaggtaatgagcagaa 127  Q
    |||||||| | ||||||||||||||    
T  5967288 gaatccatttgggtaatgagcagaa 5967312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 34279512 - 34279636
Alignment:
Q  3 catgttaagtcacactacttatcttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagc 102  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||    |||||| |||||| |||| | |||||| ||||||||||||||||||||||    
T  34279512 catgttaagtcacgctacttatcttaagttacgttataatttgcactaacgcatgttaacatgtgtaggggcatttcgatcatttactttaggaatgagc 34279611  T
Q  103 gaatccatctaggtaatgagcagaa 127  Q
    |||||||| || |||||||||||||    
T  34279612 gaatccatttaagtaatgagcagaa 34279636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 31762333 - 31762244
Alignment:
Q  38 ataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagcgaatccatctaggtaatgagcagaa 127  Q
    |||||||||||  |||||||| ||||||| ||| || |||||  | ||||||||| ||||||||||||||||| |   ||||||||||||    
T  31762333 ataatttgcactagtgcatgttaacatgcatagggatatttcgtttatttactttgggaatgagcgaatccatttgaataatgagcagaa 31762244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 15040810 - 15040684
Alignment:
Q  1 cacatgttaagtcacactacttatcttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatga 100  Q
    ||||||||||||||| ||| |||||||||| |||| ||||||||||||  |||||||| ||||||||||| | ||||||| ||||||||||| |||||||    
T  15040810 cacatgttaagtcacgctatttatcttaagctacgttataatttgcactagtgcatgttaacatgcgtaggggcatttcagtcatttactttgggaatga 15040711  T
Q  101 gcgaatccatctaggtaatgagcagaa 127  Q
    |||||||||| | ||||||||||||||    
T  15040710 gcgaatccatttgggtaatgagcagaa 15040684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 19872090 - 19872216
Alignment:
Q  1 cacatgttaagtcacactacttatcttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatga 100  Q
    ||||| ||||||||| ||||||||||||||||||| |||| |||||||    |||||| ||||||||||| | ||||| | ||||||| |||||||||||    
T  19872090 cacattttaagtcacgctacttatcttaagttacgttatagtttgcactaacgcatgttaacatgcgtagaggcattttagtcatttattttaggaatga 19872189  T
Q  101 gcgaatccatctaggtaatgagcagaa 127  Q
    |||||| ||| ||||||||| ||||||    
T  19872190 gcgaattcatttaggtaatgggcagaa 19872216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 129
Target Start/End: Complemental strand, 7665860 - 7665734
Alignment:
Q  3 catgttaagtcacactacttatcttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagc 102  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||  | |||||| ||||||| ||  | ||||||  |||||||||||  ||||||||    
T  7665860 catgttaagtcacgctacttatcttaagttacgttataatttgcactagcgcatgttaacatgcataagggcatttcggtcatttactttgcgaatgagc 7665761  T
Q  103 gaatccatctaggtaatgagcagaaat 129  Q
    |||||||| | || |||||||| ||||    
T  7665760 gaatccatttgggaaatgagcataaat 7665734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 129
Target Start/End: Complemental strand, 34082966 - 34082840
Alignment:
Q  3 catgttaagtcacactacttatcttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagc 102  Q
    ||||||||||||| ||||||||||||||||| | ||||||||| ||| | |||||| |||||||||||   |||||  |||||||||||| | |||||||    
T  34082966 catgttaagtcacgctacttatcttaagttatgttataatttgtaccagcgcatgttaacatgcgtaggagcattttgatcatttactttggaaatgagc 34082867  T
Q  103 gaatccatctaggtaatgagcagaaat 129  Q
    |||| ||| | || |||||||| ||||    
T  34082866 gaattcatttgggcaatgagcataaat 34082840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 53814535 - 53814636
Alignment:
Q  26 ttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagcgaatccatctaggtaatgagcag 125  Q
    |||||||||| | ||||||||||  | |||| | ||||||||||| | |||||  |||||||||||| ||||||||||||||||| | ||||||||||||    
T  53814535 ttaagttacgttttaatttgcactagcgcatattaacatgcgtaggggcattttgatcatttactttgggaatgagcgaatccatttgggtaatgagcag 53814634  T
Q  126 aa 127  Q
    ||    
T  53814635 aa 53814636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 123
Target Start/End: Complemental strand, 39645879 - 39645781
Alignment:
Q  25 cttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagcgaatccatctaggtaatgagc 123  Q
    ||||||||||  ||||||||||||  | |||||| |||||||||||  ||||||| ||||||||||||  |||||| ||||||||| ||| ||||||||    
T  39645879 cttaagttacattataatttgcactagcgcatgttaacatgcgtaggaacatttcgatcatttactttgcgaatgaacgaatccatttagataatgagc 39645781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 40517038 - 40516981
Alignment:
Q  66 cgtagcgacatttcaatcatttactttaggaatgagcgaatccatctaggtaatgagc 123  Q
    ||||| |||||||  |||||||||||||||||||||| ||||||| ||||||| ||||    
T  40517038 cgtagagacattttgatcatttactttaggaatgagcaaatccatttaggtaaagagc 40516981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 35069476 - 35069521
Alignment:
Q  82 tcatttactttaggaatgagcgaatccatctaggtaatgagcagaa 127  Q
    ||||||||||||| ||||| ||||||||| ||| ||||||||||||    
T  35069476 tcatttactttagaaatgaacgaatccatttagataatgagcagaa 35069521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 5124 - 5249
Alignment:
Q  4 atgttaagtcacactacttatcttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagcg 103  Q
    |||||||||||| || |||||||||||||||| ||||||||||||  | |||||| ||||||||||| | ||||||  ||||||||||| ||||||||||    
T  5124 atgttaagtcacgctgcttatcttaagttacgttataatttgcactagcgcatgttaacatgcgtaggggcatttcggtcatttactttgggaatgagcg 5223  T
Q  104 aatccatctaggtaatgagcagaaat 129  Q
    ||||||| | ||||||||||||||||    
T  5224 aatccatttgggtaatgagcagaaat 5249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 126
Target Start/End: Complemental strand, 38386301 - 38386178
Alignment:
Q  3 catgttaagtcacactacttatcttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagc 102  Q
    ||||| ||||||| ||||||||||||||||||| ||||||||||||  | |||||| ||||||||||| | ||||||||||||||||||| | |||||||    
T  38386301 catgtaaagtcacgctacttatcttaagttacgttataatttgcactagcgcatgttaacatgcgtaggggcatttcaatcatttactttggaaatgagc 38386202  T
Q  103 gaatccatctaggtaatgagcaga 126  Q
    |||||||| | | |||||||||||    
T  38386201 gaatccatttggataatgagcaga 38386178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 130
Target Start/End: Complemental strand, 38047773 - 38047646
Alignment:
Q  3 catgttaagtcacactacttatcttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagc 102  Q
    ||||||||||||| ||||||||||||||||||| ||||||||| ||  | |||||| ||||||||||| |||||||  |||||||| ||||  ||| |||    
T  38047773 catgttaagtcacgctacttatcttaagttacgttataatttgtactagcgcatgttaacatgcgtagagacattttgatcatttattttaaaaataagc 38047674  T
Q  103 gaatccatctaggtaatgagcagaaata 130  Q
    ||||| || ||| |||| ||||||||||    
T  38047673 gaatctatttagataataagcagaaata 38047646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 19365365 - 19365470
Alignment:
Q  22 tatcttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagcgaatccatctaggtaatga 121  Q
    |||||||| ||||| | ||||||||||  | |||||| || |||||||| |  |||||  ||||||  ||| ||||||||||||||||| ||||||||||    
T  19365365 tatcttaaattacgttctaatttgcactagcgcatgttaaaatgcgtaggggtatttcggtcattttatttgggaatgagcgaatccatttaggtaatga 19365464  T
Q  122 gcagaa 127  Q
    ||||||    
T  19365465 gcagaa 19365470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 127
Target Start/End: Original strand, 5061730 - 5061803
Alignment:
Q  54 catgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagcgaatccatctaggtaatgagcagaa 127  Q
    ||||| |||||||||| |||||||||  ||||||| ||| | |||||| |||||||| | ||||||||||||||    
T  5061730 catgttaacatgcgtaacgacatttcgttcatttattttggaaatgagtgaatccatttgggtaatgagcagaa 5061803  T

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Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 5506642 - 5506748
Alignment:
Q  3 catgttaagtcacactacttatcttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagc 102  Q
    ||||||||||||| ||||||||||||||||| | |||||||||||| || ||||||||||||||||||   |||||| |||||||||||| ||||||||     
T  5506642 catgttaagtcacgctacttatcttaagttatgttataatttgcactggcgcatgtcaacatgcgtaggagcatttcgatcatttactttgggaatgagt 5506741  T
Q  103 gaatcca 109  Q
    |||||||    
T  5506742 gaatcca 5506748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 34016110 - 34016005
Alignment:
Q  22 tatcttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagcgaatccatctaggtaatga 121  Q
    |||||||||||||| | |||||  |||  |||||||| |||||| |||| | ||||||| ||||||||||| ||||||||||||||||| ||||||||||    
T  34016110 tatcttaagttacgttgtaattcccactagtgcatgttaacatgtgtaggggcatttcagtcatttactttgggaatgagcgaatccatttaggtaatga 34016011  T
Q  122 gcagaa 127  Q
    ||||||    
T  34016010 gcagaa 34016005  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 127
Target Start/End: Complemental strand, 759287 - 759163
Alignment:
Q  3 catgttaagtcacactacttatcttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagc 102  Q
    ||||||||||||||| || |||||||||||||| | |||||| |||     ||||| ||||||||||    ||||||  ||||||||||| ||||||| |    
T  759287 catgttaagtcacacaacatatcttaagttacgttgtaatttacactaacacatgttaacatgcgtatgagcatttcggtcatttactttgggaatgatc 759188  T
Q  103 gaatccatctaggtaatgagcagaa 127  Q
    |||||||| ||||||||||||||||    
T  759187 gaatccatttaggtaatgagcagaa 759163  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 127
Target Start/End: Complemental strand, 28678013 - 28677889
Alignment:
Q  3 catgttaagtcacactacttatcttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagc 102  Q
    ||||||||||||| |||||||| |||||||||| |||||||| ||   | |||||| ||| | ||||| |  |||||  |||||||||||||||||||||    
T  28678013 catgttaagtcacgctacttattttaagttacgttataattttcagtagcgcatgttaacttacgtaggggtatttcggtcatttactttaggaatgagc 28677914  T
Q  103 gaatccatctaggtaatgagcagaa 127  Q
    || ||||| | | ||||||||||||    
T  28677913 gattccatttggataatgagcagaa 28677889  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 124
Target Start/End: Original strand, 6705989 - 6706107
Alignment:
Q  6 gttaagtcacactacttatcttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagcgaa 105  Q
    |||||||||| | || ||| ||||| |||| | ||||||||||  | |||||| ||||||||||| | ||||||| ||||||||||| | ||||||||||    
T  6705989 gttaagtcacgcaacatatgttaagatacgttgtaatttgcactagcgcatgttaacatgcgtaggggcatttcagtcatttactttggaaatgagcgaa 6706088  T
Q  106 tccatctaggtaatgagca 124  Q
    ||||| | | |||||||||    
T  6706089 tccatttggataatgagca 6706107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 17636399 - 17636347
Alignment:
Q  75 atttcaatcatttactttaggaatgagcgaatccatctaggtaatgagcagaa 127  Q
    |||||||||||||| ||| ||||||||||||||||| ||||||||||||||||    
T  17636399 atttcaatcatttattttgggaatgagcgaatccatttaggtaatgagcagaa 17636347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 30489850 - 30489783
Alignment:
Q  3 catgttaagtcacactacttatcttaagttacgctataatttgcaccggtgcatgtcaacatgcgtag 70  Q
    ||||||||||||| |||||||| |||||||||| |||||| |||||  | |||||| |||||||||||    
T  30489850 catgttaagtcacgctacttattttaagttacgttataatctgcactagagcatgttaacatgcgtag 30489783  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 6158973 - 6159017
Alignment:
Q  83 catttactttaggaatgagcgaatccatctaggtaatgagcagaa 127  Q
    |||||||||| ||||||||||||||||| || |||||||||||||    
T  6158973 catttactttgggaatgagcgaatccatttaagtaatgagcagaa 6159017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 17644631 - 17644672
Alignment:
Q  83 catttactttaggaatgagcgaatccatctaggtaatgagca 124  Q
    |||||||||| ||||||||||||||||| | |||||||||||    
T  17644631 catttactttgggaatgagcgaatccatttcggtaatgagca 17644672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 33144192 - 33144236
Alignment:
Q  60 aacatgcgtagcgacatttcaatcatttactttaggaatgagcga 104  Q
    ||||||||||| | ||||||  |||||||||||||||||||||||    
T  33144192 aacatgcgtaggggcatttcggtcatttactttaggaatgagcga 33144236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 33617771 - 33617650
Alignment:
Q  3 catgttaagtcacactacttatcttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagc 102  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||  | |||||| ||||||| ||| | ||||||  |||||||||||  ||||||||    
T  33617771 catgttaagtcacgctacttatcttaagttacgttataatttgcactagcgcatgttaacatgcataggggcatttcggtcatttactttgagaatgagc 33617672  T
Q  103 gaatccatctaggtaatgagca 124  Q
    |||||||| | |||||||||||    
T  33617671 gaatccatttgggtaatgagca 33617650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 33401535 - 33401428
Alignment:
Q  3 catgttaagtcacactacttatcttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagc 102  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||  | |||||| ||||||| ||  | ||||||  |||||||||||  ||||||||    
T  33401535 catgttaagtcacgctacttatcttaagttacgttataatttgcactagcgcatgttaacatgcataagggcatttcggtcatttactttgagaatgagc 33401436  T
Q  103 gaatccat 110  Q
    ||||||||    
T  33401435 gaatccat 33401428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 28474900 - 28474795
Alignment:
Q  22 tatcttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagcgaatccatctaggtaatga 121  Q
    |||||||||||||| | |||||||||   |||||||| ||||||||||| | ||||||| ||||||| ||| |||||||| |||||||| | ||||||||    
T  28474900 tatcttaagttacgttgtaatttgcagtagtgcatgttaacatgcgtaggggcatttcagtcatttattttgggaatgagtgaatccatttgggtaatga 28474801  T
Q  122 gcagaa 127  Q
    ||||||    
T  28474800 gcagaa 28474795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 124
Target Start/End: Original strand, 28446531 - 28446602
Alignment:
Q  53 gcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagcgaatccatctaggtaatgagca 124  Q
    |||||| ||||||||||| | ||||||| ||||||||||| ||||||||||||||||| | |||||||||||    
T  28446531 gcatgttaacatgcgtaggggcatttcagtcatttactttgggaatgagcgaatccatttgggtaatgagca 28446602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 39650273 - 39650199
Alignment:
Q  53 gcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagcgaatccatctaggtaatgagcagaa 127  Q
    |||||| ||||||||||| | |||||    ||||||||||||||||||||||| |||| ||||||||||||||||    
T  39650273 gcatgttaacatgcgtaggggcattttggacatttactttaggaatgagcgaaaccatttaggtaatgagcagaa 39650199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 33617955 - 33617911
Alignment:
Q  3 catgttaagtcacactacttatcttaagttacgctataatttgca 47  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||    
T  33617955 catgttaagtcacgctacttatcttaagttacgttataatttgca 33617911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 35563479 - 35563380
Alignment:
Q  3 catgttaagtcacactacttatcttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagc 102  Q
    ||||||||||||| ||||||||||||||||||         |||||  | |||||| |||||||| || | ||||||| ||||||||||| |||||||||    
T  35563479 catgttaagtcacgctacttatcttaagttaca--------tgcactagcgcatgttaacatgcgcaggggcatttcagtcatttactttgggaatgagc 35563388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 48027051 - 48027171
Alignment:
Q  7 ttaagtcacactacttatcttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagcgaat 106  Q
    ||||||||| ||||||||||||| ||||| ||||||||||||    |||| | ||||||  ||| | ||||||  ||||||| | ||| |||||||||||    
T  48027051 ttaagtcacgctacttatcttaaattacgttataatttgcactaacgcatattaacatgtatagaggcatttcggtcatttattatagaaatgagcgaat 48027150  T
Q  107 ccatctaggtaatgagcagaa 127  Q
    |||| ||  ||| ||||||||    
T  48027151 ccatttaactaaagagcagaa 48027171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 127
Target Start/End: Complemental strand, 50065557 - 50065481
Alignment:
Q  51 gtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagcgaatccatctaggtaatgagcagaa 127  Q
    |||||||| |||||||| || | ||||||  ||||||||||| ||||||||||| ||||| | ||||||||| ||||    
T  50065557 gtgcatgttaacatgcgcagaggcatttcggtcatttactttgggaatgagcgattccattttggtaatgagtagaa 50065481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 35563624 - 35563532
Alignment:
Q  3 catgttaagtcacactacttatcttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagc 102  Q
    ||||||||||||| ||||||||||||||||||         |||||  | |||||| ||||||||||| | ||||||| ||||||||||| |||||||||    
T  35563624 catgttaagtcacgctacttatcttaagttaca--------tgcactagcgcatgttaacatgcgtaggggcatttcagtcatttactttgggaatgagc 35563533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 28475983 - 28476057
Alignment:
Q  53 gcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagcgaatccatctaggtaatgagcagaa 127  Q
    |||||| |||||| |||| | |||||| ||||||||||||  ||||||||| | |||| | ||||||||||||||    
T  28475983 gcatgttaacatgtgtaggggcatttcgatcatttactttgagaatgagcggaaccatttgggtaatgagcagaa 28476057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 127
Target Start/End: Original strand, 17436495 - 17436616
Alignment:
Q  6 gttaagtcacactacttatcttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagcgaa 105  Q
    |||||||||| | ||  ||||||||||||| | ||||||||||  | |||||| |||||| |||| ||||||||  ||||||||||| |||| |||||||    
T  17436495 gttaagtcacgcaacgcatcttaagttacgttgtaatttgcactagcgcatgttaacatgtgtagggacatttcggtcatttactttgggaacgagcgaa 17436594  T
Q  106 tccatctaggtaatgagcagaa 127  Q
    ||||| | ||||||||||||||    
T  17436595 tccatttgggtaatgagcagaa 17436616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 4319192 - 4319104
Alignment:
Q  22 tatcttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagcgaatccat 110  Q
    |||||||||||||| | ||||||||||  |||||||| ||||||||||| | |||||| |||||||||||||| ||||||| |||||||    
T  4319192 tatcttaagttacgttctaatttgcactagtgcatgttaacatgcgtaggggcatttcgatcatttactttagtaatgagcaaatccat 4319104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 32274292 - 32274190
Alignment:
Q  22 tatcttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagcgaatccatctaggtaatga 121  Q
    |||||||||||| | | ||||||||||  | |||||| ||||||||||| | |||||| |||||||||||| ||||||||||||||||| | || |||||    
T  32274292 tatcttaagttatgttctaatttgcactagcgcatgttaacatgcgtaggggcatttcgatcatttactttgggaatgagcgaatccatttgggcaatga 32274193  T
Q  122 gca 124  Q
    |||    
T  32274192 gca 32274190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 31483751 - 31483673
Alignment:
Q  22 tatcttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatga 100  Q
    |||||||||||||| | ||||||||||  | |||||| ||||||||||| | |||||  || |||||||||||||||||    
T  31483751 tatcttaagttacgttgtaatttgcactagcgcatgttaacatgcgtaggggcattttgattatttactttaggaatga 31483673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 8273353 - 8273248
Alignment:
Q  22 tatcttaagttacgctataatttgcaccggtgcatgtcaacatgcgtagcgacatttcaatcatttactttaggaatgagcgaatccatctaggtaatga 121  Q
    |||||||||||||| | ||||||||||    |||||| ||||||||||| | ||||||  ||||||||||| ||||||||||||||||| | ||||||||    
T  8273353 tatcttaagttacgttgtaatttgcacaaacgcatgttaacatgcgtaggggcatttcggtcatttactttgggaatgagcgaatccatttgggtaatga 8273254  T
Q  122 gcagaa 127  Q
    ||||||    
T  8273253 gcagaa 8273248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 11713003 - 11712959
Alignment:
Q  85 tttactttaggaatgagcgaatccatctaggtaatgagcagaaat 129  Q
    |||||||| |||||||||||| |||||||||||||||||||||||    
T  11713003 tttactttgggaatgagcgaaaccatctaggtaatgagcagaaat 11712959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 38147103 - 38147144
Alignment:
Q  83 catttactttaggaatgagcgaatccatctaggtaatgagca 124  Q
    |||||||||||||||||||||||||||| | ||||| |||||    
T  38147103 catttactttaggaatgagcgaatccatttgggtaaagagca 38147144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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