View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4865_low_10 (Length: 238)

Name: NF4865_low_10
Description: NF4865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4865_low_10
NF4865_low_10
[»] chr4 (9 HSPs)
chr4 (1-221)||(36501590-36501827)
chr4 (105-221)||(45245445-45245561)
chr4 (105-221)||(55526450-55526566)
chr4 (105-221)||(34235396-34235512)
chr4 (1-108)||(24974001-24974108)
chr4 (1-96)||(55527780-55527875)
chr4 (1-96)||(12586666-12586760)
chr4 (54-107)||(23283641-23283694)
chr4 (6-77)||(45237532-45237602)
[»] chr8 (5 HSPs)
chr8 (109-221)||(34278129-34278241)
chr8 (1-97)||(34279427-34279523)
chr8 (1-108)||(5967092-5967199)
chr8 (105-221)||(5965821-5965937)
chr8 (139-219)||(24620362-24620442)
[»] chr3 (10 HSPs)
chr3 (105-221)||(19870724-19870840)
chr3 (1-108)||(15040797-15040904)
chr3 (1-108)||(34082955-34083062)
chr3 (108-221)||(39647189-39647302)
chr3 (105-221)||(35067897-35068013)
chr3 (1-108)||(19871996-19872103)
chr3 (57-108)||(7665853-7665904)
chr3 (105-221)||(27929682-27929798)
chr3 (31-93)||(39645909-39645970)
chr3 (46-108)||(35069152-35069214)
[»] chr2 (5 HSPs)
chr2 (105-221)||(8274660-8274776)
chr2 (109-221)||(22729787-22729899)
chr2 (154-221)||(26226097-26226164)
chr2 (46-108)||(8273396-8273458)
chr2 (139-219)||(14330895-14330975)
[»] chr5 (10 HSPs)
chr5 (1-108)||(30489839-30489946)
chr5 (105-221)||(760573-760689)
chr5 (1-108)||(5506546-5506653)
chr5 (1-108)||(28703994-28704101)
chr5 (1-108)||(28678002-28678109)
chr5 (105-221)||(26508178-26508294)
chr5 (109-221)||(17342947-17343060)
chr5 (54-97)||(759319-759362)
chr5 (56-97)||(38740542-38740583)
chr5 (46-94)||(34016153-34016201)
[»] chr7 (8 HSPs)
chr7 (1-107)||(38047762-38047868)
chr7 (105-219)||(38388845-38388959)
chr7 (1-108)||(5027-5134)
chr7 (1-108)||(38386290-38386397)
chr7 (105-185)||(19362763-19362843)
chr7 (5-108)||(8377965-8378068)
chr7 (5-97)||(19365262-19365353)
chr7 (178-221)||(19362350-19362393)
[»] chr6 (8 HSPs)
chr6 (108-222)||(31517834-31517948)
chr6 (105-221)||(4320508-4320624)
chr6 (109-221)||(12705246-12705358)
chr6 (5-97)||(32274304-32274396)
chr6 (108-221)||(31485066-31485182)
chr6 (5-97)||(4319204-4319296)
chr6 (46-108)||(31483798-31483860)
chr6 (16-108)||(12703945-12704041)
[»] chr1 (8 HSPs)
chr1 (1-108)||(33617944-33618051)
chr1 (1-108)||(48026951-48027058)
chr1 (1-97)||(33617760-33617856)
chr1 (1-86)||(35563613-35563698)
chr1 (31-96)||(33401543-33401608)
chr1 (1-66)||(35563468-35563533)
chr1 (105-221)||(7319728-7319844)
chr1 (46-97)||(28474943-28474994)
[»] scaffold0293 (1 HSPs)
scaffold0293 (105-189)||(5797-5880)
[»] scaffold0700 (1 HSPs)
scaffold0700 (105-168)||(3577-3640)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 36501827 - 36501590
Alignment:
Q  1 tgacttaacatgtgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcggtagtgtattgtgaaacgtgagtta--------- 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||             
T  36501827 tgacttaacatgtgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaatatgcggtagtgtattgtgaaacgtgagttattgtgaaac 36501728  T
Q  92 --------actcacattgtcatttgaagtaggagttgaattttattagcgggaccaagtgctaagacgtgaacctttagtctttggaacattaatcttga 183  Q
            |||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  36501727 gtgagttaactcacgttgtcatttgaagtaggagttgaattttatcaacgggaccaagtgctaagacgtgaacctttagtctttggaacattaatcttgg 36501628  T
Q  184 catgtgagcattgactatcgggattttgagcatcaata 221  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36501627 catgtgagcattgactatcgggattttgagcatcaata 36501590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 105 - 221
Target Start/End: Original strand, 45245445 - 45245561
Alignment:
Q  105 tttgaagtaggagttgaattttattagcgggaccaagtgctaagacgtgaacctttagtctttggaacattaatcttgacatgtgagcattgactatcgg 204  Q
    |||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  45245445 tttgaagtaggagttgaattttgtgagcgggaccaagtgccaagacgtgaacctttagtctttggaacattactcttggcatgtgagcattgactatcgg 45245544  T
Q  205 gattttgagcatcaata 221  Q
     ||||||||||||||||    
T  45245545 aattttgagcatcaata 45245561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 105 - 221
Target Start/End: Complemental strand, 55526566 - 55526450
Alignment:
Q  105 tttgaagtaggagttgaattttattagcgggaccaagtgctaagacgtgaacctttagtctttggaacattaatcttgacatgtgagcattgactatcgg 204  Q
    |||||||||||||||||||||| | ||||||||||||||| |||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  55526566 tttgaagtaggagttgaattttgtgagcgggaccaagtgccaagacgcgaacctttagtctttggaacattactcttggcatgtgagcattgactatcgg 55526467  T
Q  205 gattttgagcatcaata 221  Q
    |||||||||||||||||    
T  55526466 gattttgagcatcaata 55526450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 105 - 221
Target Start/End: Original strand, 34235396 - 34235512
Alignment:
Q  105 tttgaagtaggagttgaattttattagcgggaccaagtgctaagacgtgaacctttagtctttggaacattaatcttgacatgtgagcattgactatcgg 204  Q
    |||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||| ||    
T  34235396 tttgaagtaggagttgaattttgtgagcgggaccaagtgccaagacgtgaacctttagtctttggaacattactcttggcatgtgagcatttactattgg 34235495  T
Q  205 gattttgagcatcaata 221  Q
    | |||||||||||||||    
T  34235496 gtttttgagcatcaata 34235512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 24974108 - 24974001
Alignment:
Q  1 tgacttaacatgtgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcggtagtgtattgtgaaacgtgagttaactcacatt 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| ||    
T  24974108 tgacttaacatgcgctagtgttatttgtgagttatttgttgaatgtttagctcaagttaacatgcgctagtgtattgtgaaacgtgagttaactcacgtt 24974009  T
Q  101 gtcatttg 108  Q
    | ||||||    
T  24974008 gccatttg 24974001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 55527875 - 55527780
Alignment:
Q  1 tgacttaacatgtgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcggtagtgtattgtgaaacgtgagttaactca 96  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  55527875 tgacttaacatgcactagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcgctagtgtattgtgcaacgtgagttaactca 55527780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 12586760 - 12586666
Alignment:
Q  1 tgacttaacatgtgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcggtagtgtattgtgaaacgtgagttaactca 96  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||    
T  12586760 tgacttaacatgcactagtgttatttgtgagttatt-gttgaatgcttagcgcaagttaagatgcgttagtgtattgtgaaatgtgagttaactca 12586666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 23283694 - 23283641
Alignment:
Q  54 aagttaacatgcggtagtgtattgtgaaacgtgagttaactcacattgtcattt 107  Q
    ||||||||||||| ||||||| |||| ||||||||||||||||| ||| |||||    
T  23283694 aagttaacatgcgctagtgtaatgtgtaacgtgagttaactcacgttgacattt 23283641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 45237532 - 45237602
Alignment:
Q  6 taacatgtgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcggtagtgtattg 77  Q
    ||||||| |||||||||||||||| || |||| |||||| ||||  | ||||||||||||| ||||||||||    
T  45237532 taacatgcgctagtgttatttgtgtgtaattt-ttgaatacttaatgtaagttaacatgcgctagtgtattg 45237602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 109 - 221
Target Start/End: Complemental strand, 34278241 - 34278129
Alignment:
Q  109 aagtaggagttgaattttattagcgggaccaagtgctaagacgtgaacctttagtctttggaacattaatcttgacatgtgagcattgactatcgggatt 208  Q
    |||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  34278241 aagtaggagttgaattttgtgagcgggaccaagtgccaagacgtgaacctttagtctttggaacattactcttggcatgtgagcattgactatcgggatt 34278142  T
Q  209 ttgagcatcaata 221  Q
    |||||||||||||    
T  34278141 ttgagcatcaata 34278129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 34279523 - 34279427
Alignment:
Q  1 tgacttaacatgtgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcggtagtgtattgtgaaacgtgagttaactcac 97  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  34279523 tgacttaacatgcgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcgctagtgtattgtgcaacgtgagttaactcac 34279427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 5967199 - 5967092
Alignment:
Q  1 tgacttaacatgtgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcggtagtgtattgtgaaacgtgagttaactcacatt 100  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||    
T  5967199 tgacttaacatgcgctagtgttatttgtgtgttatttgttgaatgcttagcgcaagttaacatgcgctagagtattgtgaaacgtgagttaactcacgtt 5967100  T
Q  101 gtcatttg 108  Q
    | ||||||    
T  5967099 gccatttg 5967092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 105 - 221
Target Start/End: Complemental strand, 5965937 - 5965821
Alignment:
Q  105 tttgaagtaggagttgaattttattagcgggaccaagtgctaagacgtgaacctttagtctttggaacattaatcttgacatgtgagcattgactatcgg 204  Q
    |||||||||||||||||| ||| | ||| ||||||||||| |||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||    
T  5965937 tttgaagtaggagttgaagtttgtgagcaggaccaagtgccaagacgtgaacctttagtctttggcacattactcttggcatgtgagcattgactatcgg 5965838  T
Q  205 gattttgagcatcaata 221  Q
     ||||||||||||||||    
T  5965837 aattttgagcatcaata 5965821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 24620362 - 24620442
Alignment:
Q  139 aagtgctaagacgtgaacctttagtctttggaacattaatcttgacatgtgagcattgactatcgggattttgagcatcaa 219  Q
    |||||| |||||||| ||||||| ||||||| || |||||||||   || ||| ||||||||| ||||||||||| |||||    
T  24620362 aagtgccaagacgtgcacctttactctttggtaccttaatcttgggttgggagaattgactattgggattttgagaatcaa 24620442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 105 - 221
Target Start/End: Complemental strand, 19870840 - 19870724
Alignment:
Q  105 tttgaagtaggagttgaattttattagcgggaccaagtgctaagacgtgaacctttagtctttggaacattaatcttgacatgtgagcattgactatcgg 204  Q
    |||||||||||| ||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  19870840 tttgaagtaggaattgaattttgtgagcgggaccaagtgccaagacgtgaacctttagtctttggaacattactcttgccatgtgagcattgactatcgg 19870741  T
Q  205 gattttgagcatcaata 221  Q
    |||||||||||||||||    
T  19870740 gattttgagcatcaata 19870724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 15040797 - 15040904
Alignment:
Q  1 tgacttaacatgtgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcggtagtgtattgtgaaacgtgagttaactcacatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||| ||    
T  15040797 tgacttaacatgtgctagtgttatttgtgagttatttgttgaatgcttagtgcaagttaacatgcgctagtgtattgtgcaacgtgagttaactcacgtt 15040896  T
Q  101 gtcatttg 108  Q
    | ||||||    
T  15040897 gccatttg 15040904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 34082955 - 34083062
Alignment:
Q  1 tgacttaacatgtgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcggtagtgtattgtgaaacgtgagttaactcacatt 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||    
T  34082955 tgacttaacatgcgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcactagtgtattgtgaaacgtgagttaactcacgtt 34083054  T
Q  101 gtcatttg 108  Q
    | ||||||    
T  34083055 gccatttg 34083062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 108 - 221
Target Start/End: Original strand, 39647189 - 39647302
Alignment:
Q  108 gaagtaggagttgaattttattagcgggaccaagtgctaagacgtgaacctttagtctttggaacattaatcttgacatgtgagcattgactatcgggat 207  Q
    ||||||||||||||||||| | |||||| |||||||| ||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||    
T  39647189 gaagtaggagttgaattttgtgagcggggccaagtgccaagacgtgaacctttagtctttgcaacattactcttggcatgtgagcattgactatcgggat 39647288  T
Q  208 tttgagcatcaata 221  Q
    ||||||||||||||    
T  39647289 tttgagcatcaata 39647302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 105 - 221
Target Start/End: Complemental strand, 35068013 - 35067897
Alignment:
Q  105 tttgaagtaggagttgaattttattagcgggaccaagtgctaagacgtgaacctttagtctttggaacattaatcttgacatgtgagcattgactatcgg 204  Q
    |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||| ||||| |||| ||||| ||||||||||||||| |||||    
T  35068013 tttgaagtaggagttgaattttgtgagcgggaccaagtgccaagacgtgaacctttagtctctggaatattactcttggcatgtgagcattgacaatcgg 35067914  T
Q  205 gattttgagcatcaata 221  Q
    |||||||||||||||||    
T  35067913 gattttgagcatcaata 35067897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 19872103 - 19871996
Alignment:
Q  1 tgacttaacatgtgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcggtagtgtattgtgaaacgtgagttaactcacatt 100  Q
    |||||||| ||||| ||||||||||||||||||| || | |||||||||||||||||||||||||| |||||||||||| |||||||||||||| || ||    
T  19872103 tgacttaaaatgtgttagtgttatttgtgagttacttatcgaatgcttagcgcaagttaacatgcgctagtgtattgtgcaacgtgagttaacttacgtt 19872004  T
Q  101 gtcatttg 108  Q
    | ||||||    
T  19872003 gccatttg 19871996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 7665853 - 7665904
Alignment:
Q  57 ttaacatgcggtagtgtattgtgaaacgtgagttaactcacattgtcatttg 108  Q
    |||||||||| |||||||||||||||||||| ||||||||| ||||||||||    
T  7665853 ttaacatgcgctagtgtattgtgaaacgtgaattaactcacgttgtcatttg 7665904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 221
Target Start/End: Complemental strand, 27929798 - 27929682
Alignment:
Q  105 tttgaagtaggagttgaattttattagcgggaccaagtgctaagacgtgaacctttagtctttggaacattaatcttgacatgtgagcattgactatcgg 204  Q
    ||||||||||| ||||||  || | |||||||  |||||| |||||||  ||||||| |||||||||| |||  ||||   ||| ||||||||||||||     
T  27929798 tttgaagtaggcgttgaagcttgtgagcgggagtaagtgccaagacgttcacctttactctttggaaccttacccttgggttgtaagcattgactatcgt 27929699  T
Q  205 gattttgagcatcaata 221  Q
    ||||||||| |||||||    
T  27929698 gattttgagaatcaata 27929682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 39645909 - 39645970
Alignment:
Q  31 gttatttgttgaatgcttagcgcaagttaacatgcggtagtgtattgtgaaacgtgagttaac 93  Q
    ||||||||| |||| || |||| ||||||||||||| |||||||||||| |||||||||||||    
T  39645909 gttatttgtagaatact-agcgtaagttaacatgcgctagtgtattgtgtaacgtgagttaac 39645970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 35069214 - 35069152
Alignment:
Q  46 cttagcgcaagttaacatgcggtagtgtattgtgaaacgtgagttaactcacattgtcatttg 108  Q
    ||||||| |||||||||| || ||||||| |||| || |||||||||||||| ||| ||||||    
T  35069214 cttagcgtaagttaacattcgttagtgtaatgtgtaatgtgagttaactcacgttgacatttg 35069152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 105 - 221
Target Start/End: Original strand, 8274660 - 8274776
Alignment:
Q  105 tttgaagtaggagttgaattttattagcgggaccaagtgctaagacgtgaacctttagtctttggaacattaatcttgacatgtgagcattgactatcgg 204  Q
    |||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  8274660 tttgaagtaggagttgaattttgtgagcgggaccaagtgccaagacgtgaacctttagtctttggaacattactcttggcatgtgagcattgactatcgg 8274759  T
Q  205 gattttgagcatcaata 221  Q
     ||||||||||||||||    
T  8274760 aattttgagcatcaata 8274776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 22729787 - 22729899
Alignment:
Q  109 aagtaggagttgaattttattagcgggaccaagtgctaagacgtgaacctttagtctttggaacattaatcttgacatgtgagcattgactatcgggatt 208  Q
    ||||||||||||||  || | || ||||  |||| | ||||||||||||||||||||||||||||||| ||||  |||||||| ||||||||| || |||    
T  22729787 aagtaggagttgaagcttgtgagagggagaaagtaccaagacgtgaacctttagtctttggaacattactcttcgcatgtgagtattgactattggaatt 22729886  T
Q  209 ttgagcatcaata 221  Q
    || ||||||||||    
T  22729887 ttaagcatcaata 22729899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 26226097 - 26226164
Alignment:
Q  154 aacctttagtctttggaacattaatcttgacatgtgagcattgactatcgggattttgagcatcaata 221  Q
    |||||||| |||||||||||||| ||||  |||||||||||||||||||||||||||||| |||||||    
T  26226097 aacctttactctttggaacattactctttccatgtgagcattgactatcgggattttgagaatcaata 26226164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 8273396 - 8273458
Alignment:
Q  46 cttagcgcaagttaacatgcggtagtgtattgtgaaacgtgagttaactcacattgtcatttg 108  Q
    ||||||| ||||||||||||| ||||||| |||| ||||||||||||||||| ||| ||||||    
T  8273396 cttagcgtaagttaacatgcgctagtgtaatgtgtaacgtgagttaactcacgttgacatttg 8273458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 14330895 - 14330975
Alignment:
Q  139 aagtgctaagacgtgaacctttagtctttggaacattaatcttgacatgtgagcattgactatcgggattttgagcatcaa 219  Q
    |||||| |||||||| ||||| | |||||||||| |||||||||   |||||| ||| ||||||||||||||||| |||||    
T  14330895 aagtgccaagacgtgcaccttcactctttggaaccttaatcttgggttgtgaggattcactatcgggattttgagaatcaa 14330975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 8e-45; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 30489839 - 30489946
Alignment:
Q  1 tgacttaacatgtgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcggtagtgtattgtgaaacgtgagttaactcacatt 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||    
T  30489839 tgacttaacatgcgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcgctagtgtattgtgaaacgtgagttaactcacgtt 30489938  T
Q  101 gtcatttg 108  Q
    | ||||||    
T  30489939 gccatttg 30489946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 105 - 221
Target Start/End: Original strand, 760573 - 760689
Alignment:
Q  105 tttgaagtaggagttgaattttattagcgggaccaagtgctaagacgtgaacctttagtctttggaacattaatcttgacatgtgagcattgactatcgg 204  Q
    |||||||||||||| ||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  760573 tttgaagtaggagtagaattttatgagcgggaccaagtgccaagacgtcaacctttagtctttggaacattactcttggcatgtgagcattgactatcgg 760672  T
Q  205 gattttgagcatcaata 221  Q
    |||||||| ||||||||    
T  760673 gattttgaacatcaata 760689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 5506653 - 5506546
Alignment:
Q  1 tgacttaacatgtgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcggtagtgtattgtgaaacgtgagttaactcacatt 100  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||| ||    
T  5506653 tgacttaacatgcgctagtgtcatttgtgagttatttgttgaatgcttagtgcaagttaacatgcgctagtgtactgtgaaacgtgagttaactcacgtt 5506554  T
Q  101 gtcatttg 108  Q
    | ||||||    
T  5506553 gccatttg 5506546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 28703994 - 28704101
Alignment:
Q  1 tgacttaacatgtgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcggtagtgtattgtgaaacgtgagttaactcacatt 100  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||| ||    
T  28703994 tgacttaacacgcgctagtgttatttgtgagttatttgttgaatgcttagcgcaggttaacatgcgctagtgtattgtgcaacgtgagttaactcacgtt 28704093  T
Q  101 gtcatttg 108  Q
    | ||||||    
T  28704094 gacatttg 28704101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 28678002 - 28678109
Alignment:
Q  1 tgacttaacatgtgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcggtagtgtattgtgaaacgtgagttaactcacatt 100  Q
    |||||||||||| | || |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||| ||    
T  28678002 tgacttaacatgcgatactgttatttgtgagttatttgttgaatgcttagcgcaggttaacatgcgctagtgtattgtgcaacgtgagttaactcacgtt 28678101  T
Q  101 gtcatttg 108  Q
    | ||||||    
T  28678102 gacatttg 28678109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 105 - 221
Target Start/End: Original strand, 26508178 - 26508294
Alignment:
Q  105 tttgaagtaggagttgaattttattagcgggaccaagtgctaagacgtgaacctttagtctttggaacattaatcttgacatgtgagcattgactatcgg 204  Q
    ||||||||||| ||||||  || | || ||||  |||||| |||||||| ||||||| |||||||||||||| | ||| | | ||||||||||||||| |    
T  26508178 tttgaagtaggtgttgaaacttgtgagagggagtaagtgccaagacgtgcacctttactctttggaacattactattggcttttgagcattgactatcag 26508277  T
Q  205 gattttgagcatcaata 221  Q
    ||||||||| |||||||    
T  26508278 gattttgagaatcaata 26508294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 221
Target Start/End: Complemental strand, 17343060 - 17342947
Alignment:
Q  109 aagtaggagttgaattttattagcgggaccaagtgctaagacgtgaacctttagtcttt-ggaacattaatcttgacatgtgagcattgactatcgggat 207  Q
    |||||||||| |||  || | ||||||| ||||||| |||||||| ||||||| ||||| ||||||||| ||||| | | |||||||||||||| |||||    
T  17343060 aagtaggagtcgaagcttgtgagcgggagcaagtgccaagacgtgcacctttactcttttggaacattactcttggcttatgagcattgactattgggat 17342961  T
Q  208 tttgagcatcaata 221  Q
    || ||| |||||||    
T  17342960 ttggagaatcaata 17342947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 97
Target Start/End: Original strand, 759319 - 759362
Alignment:
Q  54 aagttaacatgcggtagtgtattgtgaaacgtgagttaactcac 97  Q
    ||||||||||||| ||||||| |||| |||||||||||||||||    
T  759319 aagttaacatgcgctagtgtaatgtgtaacgtgagttaactcac 759362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 38740583 - 38740542
Alignment:
Q  56 gttaacatgcggtagtgtattgtgaaacgtgagttaactcac 97  Q
    ||||||||||| ||||||| |||| |||||||||||||||||    
T  38740583 gttaacatgcgctagtgtaatgtgtaacgtgagttaactcac 38740542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 34016153 - 34016201
Alignment:
Q  46 cttagcgcaagttaacatgcggtagtgtattgtgaaacgtgagttaact 94  Q
    ||||||| ||||||||||||| || |||| |||| ||||||||||||||    
T  34016153 cttagcgtaagttaacatgcgctaatgtaatgtgtaacgtgagttaact 34016201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 38047762 - 38047868
Alignment:
Q  1 tgacttaacatgtgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcggtagtgtattgtgaaacgtgagttaactcacatt 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||    
T  38047762 tgacttaacatgcgctagtgttatttgtgagttatttgttgaatgtttagcgcaagttaacatgcgctagtgtattgtgaaacgtgagttaactcacgtt 38047861  T
Q  101 gtcattt 107  Q
     ||||||    
T  38047862 atcattt 38047868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 105 - 219
Target Start/End: Original strand, 38388845 - 38388959
Alignment:
Q  105 tttgaagtaggagttgaattttattagcgggaccaagtgctaagacgtgaacctttagtctttggaacattaatcttgacatgtgagcattgactatcgg 204  Q
    |||||||||||||||||||||| | ||||||| ||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  38388845 tttgaagtaggagttgaattttgtgagcgggatcaagtgccaagacgtgaacctttagtctttggaacattactcttggcatgtgagcattgactatcgg 38388944  T
Q  205 gattttgagcatcaa 219  Q
    |||||||| ||||||    
T  38388945 gattttgaacatcaa 38388959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 5134 - 5027
Alignment:
Q  1 tgacttaacatgtgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcggtagtgtattgtgaaacgtgagttaactcacatt 100  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||    
T  5134 tgacttaacatacgctagtgttatttgtgagttatttgttgaatgcttagtgcaagttaacatgcgctagtgtattgtgaaacgtgagttaactcacgtt 5035  T
Q  101 gtcatttg 108  Q
    | ||||||    
T  5034 gccatttg 5027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 38386290 - 38386397
Alignment:
Q  1 tgacttaacatgtgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcggtagtgtattgtgaaacgtgagttaactcacatt 100  Q
    |||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||    
T  38386290 tgactttacatgcgctagtgttatttgtaagttatttgttgaatgcttagcgcaagttaacatgtgctagtgtattgtgaaacgtgagttaactcacgtt 38386389  T
Q  101 gtcatttg 108  Q
    | ||||||    
T  38386390 gccatttg 38386397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 185
Target Start/End: Complemental strand, 19362843 - 19362763
Alignment:
Q  105 tttgaagtaggagttgaattttattagcgggaccaagtgctaagacgtgaacctttagtctttggaacattaatcttgaca 185  Q
    |||||||||||| |||||||||   ||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||    
T  19362843 tttgaagtaggaattgaattttgggagcgggaccaagtgccaagacatgaacctttagtctttggaacattactcttgaca 19362763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 8378068 - 8377965
Alignment:
Q  5 ttaacatgtgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcggtagtgtattgtgaaacgtgagttaactcacattgtca 104  Q
    |||||||| |||||| ||||||||| |||||||||||||| |||| |  ||||||||||||  || |||||| || ||||||||||||||||| ||||||    
T  8378068 ttaacatgcgctagtattatttgtgtgttatttgttgaatacttaacataagttaacatgcactaatgtattatgtaacgtgagttaactcacgttgtca 8377969  T
Q  105 tttg 108  Q
    ||||    
T  8377968 tttg 8377965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 19365353 - 19365262
Alignment:
Q  5 ttaacatgtgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcggtagtgtattgtgaaacgtgagttaactcac 97  Q
    ||||||||  ||||||||| ||||| ||||| |||||||| |||| || | ||||||||||  || ||||||||  |||||||||||||||||    
T  19365353 ttaacatgcactagtgttaattgtgtgttatctgttgaatactta-cgtatgttaacatgccctactgtattgtttaacgtgagttaactcac 19365262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 19362393 - 19362350
Alignment:
Q  178 tcttgacatgtgagcattgactatcgggattttgagcatcaata 221  Q
    ||||| |||||||||| ||||||||| |||||||||||||||||    
T  19362393 tcttggcatgtgagcaatgactatcgagattttgagcatcaata 19362350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 31517834 - 31517948
Alignment:
Q  108 gaagtaggagttgaattttattagcgggaccaagtgctaagacgtgaacctttagtctttggaacattaatcttgacatgtgagcattgactatcgggat 207  Q
    ||||||||||||||| ||| | ||||||||||||||| |||||||||||||||||||||||  |||||| ||||| ||||||||||||||||||||||||    
T  31517834 gaagtaggagttgaagtttgtaagcgggaccaagtgccaagacgtgaacctttagtctttgacacattactcttggcatgtgagcattgactatcgggat 31517933  T
Q  208 tttgagcatcaatat 222  Q
    |||||||||||||||    
T  31517934 tttgagcatcaatat 31517948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 105 - 221
Target Start/End: Original strand, 4320508 - 4320624
Alignment:
Q  105 tttgaagtaggagttgaattttattagcgggaccaagtgctaagacgtgaacctttagtctttggaacattaatcttgacatgtgagcattgactatcgg 204  Q
    ||||||||||| | |||||||| | ||| ||||||||||| ||||||||||||||||||||||||||||||| | ||| |||||||||||||| ||| ||    
T  4320508 tttgaagtagggggtgaattttgtgagcaggaccaagtgccaagacgtgaacctttagtctttggaacattatttttggcatgtgagcattgattattgg 4320607  T
Q  205 gattttgagcatcaata 221  Q
    |||||||||||||||||    
T  4320608 gattttgagcatcaata 4320624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 12705246 - 12705358
Alignment:
Q  109 aagtaggagttgaattttattagcgggaccaagtgctaagacgtgaacctttagtctttggaacattaatcttgacatgtgagcattgactatcgggatt 208  Q
    ||||| |||||||||||| | ||  || |||||||| |||||||||| |||||||||||||||||||| | ||| ||||||||||||||||||  |||||    
T  12705246 aagtatgagttgaattttgtgagttgggccaagtgccaagacgtgaatctttagtctttggaacattactattggcatgtgagcattgactattaggatt 12705345  T
Q  209 ttgagcatcaata 221  Q
    |||||||||||||    
T  12705346 ttgagcatcaata 12705358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 32274304 - 32274396
Alignment:
Q  5 ttaacatgtgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcggtagtgtattgtgaaacgtgagttaactcac 97  Q
    ||||||||  ||||||||| ||||| |||||||||||||| ||||||| | |||||||||||  ||||||||||| |||||||||||||||||    
T  32274304 ttaacatgcactagtgttaattgtgtgttatttgttgaatacttagcgtatgttaacatgcgccagtgtattgtgtaacgtgagttaactcac 32274396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 108 - 221
Target Start/End: Original strand, 31485066 - 31485182
Alignment:
Q  108 gaagtaggagttgaattttattagcgggacca---agtgctaagacgtgaacctttagtctttggaacattaatcttgacatgtgagcattgactatcgg 204  Q
    ||||||||||||||| ||| | ||||||||||   | ||| |||||||||||||||||||||||  ||| || ||||| || |||||||| |||||||||    
T  31485066 gaagtaggagttgaaatttgtaagcgggaccaccaaatgccaagacgtgaacctttagtctttgacacactactcttggcaggtgagcatggactatcgg 31485165  T
Q  205 gattttgagcatcaata 221  Q
     ||||||||||||||||    
T  31485166 aattttgagcatcaata 31485182  T

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Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 4319204 - 4319296
Alignment:
Q  5 ttaacatgtgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcggtagtgtattgtgaaacgtgagttaactcac 97  Q
    |||||||| |||||||||| ||||| |||||||||||||| ||||| | | ||||||||| | |||||||||||  |||||||||||||||||    
T  4319204 ttaacatgcgctagtgttaattgtgtgttatttgttgaatacttagtgtatgttaacatgtgctagtgtattgtttaacgtgagttaactcac 4319296  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 31483798 - 31483860
Alignment:
Q  46 cttagcgcaagttaacatgcggtagtgtattgtgaaacgtgagttaactcacattgtcatttg 108  Q
    ||||||| ||||||||||||| ||||||| |||| ||||||||||||||||| ||| ||||||    
T  31483798 cttagcgtaagttaacatgcgctagtgtaatgtgtaacgtgagttaactcacgttgccatttg 31483860  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 12703945 - 12704041
Alignment:
Q  16 tagtgttatttgtgagttatttgttgaatgcttagcgcaa----gttaacatgcggtagtgtattgtgaaacgtgagttaactcacattgtcatttg 108  Q
    |||||||||||||| ||||||||| |||| |||||||  |    ||||||||||| |||| ||||||| ||||||| ||||||||| ||| ||||||    
T  12703945 tagtgttatttgtgtgttatttgtagaatacttagcgttaattagttaacatgcgctagtatattgtgtaacgtgatttaactcacgttgccatttg 12704041  T

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Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 33617944 - 33618051
Alignment:
Q  1 tgacttaacatgtgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcggtagtgtattgtgaaacgtgagttaactcacatt 100  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| ||||||||||||||||| ||    
T  33617944 tgacttaacatgcgctagtgttatttgtgagttatttgttcaatgcttagcgcaagttaacatgtgctagtgtattgtgcaacgtgagttaactcacgtt 33618043  T
Q  101 gtcatttg 108  Q
    | ||||||    
T  33618044 gccatttg 33618051  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 48027058 - 48026951
Alignment:
Q  1 tgacttaacatgtgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcggtagtgtattgtgaaacgtgagttaactcacatt 100  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||| ||    
T  48027058 tgacttaaaatgcgctagtgttatttgtgagttatttgttgaatgcttaacgcaagttaacatgtgctagtgtattgtgaaacgtgagttaactcacgtt 48026959  T
Q  101 gtcatttg 108  Q
    | ||||||    
T  48026958 gccatttg 48026951  T

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Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 33617760 - 33617856
Alignment:
Q  1 tgacttaacatgtgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcggtagtgtattgtgaaacgtgagttaactcac 97  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||| | |||||||||||| || ||||||||||||||    
T  33617760 tgacttaacatgcgctagtgttatttgtgagttatttgttcaatgcttagcgcaggttaacatgtgctagtgtattgtgcaatgtgagttaactcac 33617856  T

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Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 35563613 - 35563698
Alignment:
Q  1 tgacttaacatgtgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcggtagtgtattgtgaaacgtg 86  Q
    ||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  35563613 tgacttaacatgcactagtgttatttgtgatttatttgttgaatgcttagcgcaagttaacatgcgctagtgtattgtgcaacgtg 35563698  T

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Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 33401543 - 33401608
Alignment:
Q  31 gttatttgttgaatgcttagcgcaagttaacatgcggtagtgtattgtgaaacgtgagttaactca 96  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||    
T  33401543 gttatttgttgaatgcttagcgcaagttaacatgtgctagtgtattgtgcaacgtgagttaactca 33401608  T

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Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 35563468 - 35563533
Alignment:
Q  1 tgacttaacatgtgctagtgttatttgtgagttatttgttgaatgcttagcgcaagttaacatgcg 66  Q
    ||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35563468 tgacttaacatgcactagtgttatttgtgatttatttgttgaatgcttagcgcaagttaacatgcg 35563533  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 221
Target Start/End: Original strand, 7319728 - 7319844
Alignment:
Q  105 tttgaagtaggagttgaattttattagcgggaccaagtgctaagacgtgaacctttagtctttggaacattaatcttgacatgtgagcattgactatcgg 204  Q
    ||||||||||| || |||  |||| |||||||  |||||| |||||||| || |||| ||||||||   ||| | ||| | |||||||||||||||||||    
T  7319728 tttgaagtaggtgtcgaagcttatgagcgggagtaagtgccaagacgtgcacttttactctttggattcttactattggcttgtgagcattgactatcgg 7319827  T
Q  205 gattttgagcatcaata 221  Q
    ||||||||| |||||||    
T  7319828 gattttgagaatcaata 7319844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 28474943 - 28474994
Alignment:
Q  46 cttagcgcaagttaacatgcggtagtgtattgtgaaacgtgagttaactcac 97  Q
    ||||||| ||||||||||| | |||||||||||| || ||||||||||||||    
T  28474943 cttagcgtaagttaacatgggctagtgtattgtgtaatgtgagttaactcac 28474994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 189
Target Start/End: Original strand, 5797 - 5880
Alignment:
Q  105 tttgaagtaggagttgaattttattagcgggaccaagtgctaagacgtgaacctttagtctttggaacattaatcttgacatgtg 189  Q
    |||||||||||||| |||  || | ||||||| ||||||| |||||||||||||||| ||||| |||||||| ||||| ||||||    
T  5797 tttgaagtaggagtcgaaggttgtgagcgggagcaagtgccaagacgtgaacctttactcttt-gaacattactcttggcatgtg 5880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0700 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0700
Description:

Target: scaffold0700; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 3640 - 3577
Alignment:
Q  105 tttgaagtaggagttgaattttattagcgggaccaagtgctaagacgtgaacctttagtctttg 168  Q
    |||||||||||||| |||  || | ||||||| ||||||| |||||||||||||||| ||||||    
T  3640 tttgaagtaggagtcgaaggttgtgagcgggagcaagtgccaagacgtgaacctttactctttg 3577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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