View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4865_low_2 (Length: 615)
Name: NF4865_low_2
Description: NF4865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4865_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 12 - 597
Target Start/End: Complemental strand, 2808978 - 2808395
Alignment:
| Q |
12 |
atgaagacgaaaaggaataataacgaaacacaaaaagaagaaatataggctgatttgacgcataagttgtttgctaaatttgttgaattgaaggatttag |
111 |
Q |
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| T |
2808978 |
atgaagacgaaaaggaataataacgaaacacaaaaagaagaaatataggttgatttgacgcatcagttgta-gctaagtttgttgaattgaaggatttag |
2808880 |
T |
|
| Q |
112 |
tttgtgtttggttcaacctttgatcaagcaatcaaatttgattttgaagatataaaattgatttgatataattgattttgcactttcggattgatcttaa |
211 |
Q |
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| T |
2808879 |
tttgtgtttggttcaacctttgatcaagcaatcaaatttgattttgaagaaataaaattgatttgatataattgattttgcacttttgaattgatcttaa |
2808780 |
T |
|
| Q |
212 |
tttaaagtcaaggtttgtgcatcacataaggtattctgtattcaacttggagtagttgtgccaagggatattaaaggaatgtaaccnnnnnnnggatatt |
311 |
Q |
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| T |
2808779 |
tttaaagtcaaggtttgtgcatcacataaggtattctgtattcaaattggagtagttgtgccaagggatattaaaggaatgtaaccaaaaaaaggatatt |
2808680 |
T |
|
| Q |
312 |
aaaggaaggcatgaaattgatgaagacctaacactaccctattgataaccagtatgggaggcattataggatagcaaagnnnnnnntacctcaacttgac |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
2808679 |
aaaggaaggcatgaaattgatgaagacctaacactaccctattgttaaccagtatgggaggcattataggatagcaaagaagaaaatgcctcaacttgac |
2808580 |
T |
|
| Q |
412 |
aatgccacgtaaccatttcgaattataacagacaatcgatatttctttcacattttcaatcgctctcttcctatcataattgtgatatgttgttcatcat |
511 |
Q |
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| T |
2808579 |
aatgccacgtaaccatttcgaatcctaaaggacaatcgatatttctttcacattttcaatcgctctcttcctatcataattatgatatgttgttcatcat |
2808480 |
T |
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| Q |
512 |
catttactttctaaaattgcttcatttatttctannnnnnncattaagttaatgaaactcacttcttttcagattaatgaaactat |
597 |
Q |
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| T |
2808479 |
cgtttactttctaaaattgcttcatttatttcta-ttttttcattaagttaatgaaactcacttcttttcagattaatgaaactat |
2808395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 436 - 542
Target Start/End: Complemental strand, 2811140 - 2811034
Alignment:
| Q |
436 |
ataacagacaatcgatatttctttcacattttcaatcgctctcttcctatcataattgtgatatgttgttcatcatcatttactttctaaaattgcttca |
535 |
Q |
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|||||| || |||||| ||||||||||| | |||||| ||||| | |||||| ||||||||||||| |||||||||||||||||||| ||||| |||| |
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| T |
2811140 |
ataacacactatcgatctttctttcacactctcaatcactctccttttatcatgattgtgatatgttattcatcatcatttactttctgaaattacttcg |
2811041 |
T |
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| Q |
536 |
tttattt |
542 |
Q |
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||||||| |
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| T |
2811040 |
tttattt |
2811034 |
T |
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