View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4865_low_4 (Length: 329)
Name: NF4865_low_4
Description: NF4865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4865_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 28505676 - 28505375
Alignment:
| Q |
18 |
aaattttatatcaacaaggttaaaacttaagagtggtggacattggagaatttaaagagatgattttattgctgagtttataggttgaagaaggatgaat |
117 |
Q |
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| T |
28505676 |
aaattttatatcaacaaggttaaaacttaagagtggtggacattggagaatttaaagagatgattttattgctgagtttataggttgaagaaggatgaat |
28505577 |
T |
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| Q |
118 |
gcaaagttgaagatatacatatgatgttgaatggat-gaagaagatctcaatctgttttcaatttcaaatttagtagtccatatccgtttttatttattt |
216 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28505576 |
gcaaagttgaagatatacatatgatgttgaatgcaaagaagaagatctcaatctgttttcaatttcaaatttagtagtccatatccgtttttatttattt |
28505477 |
T |
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| Q |
217 |
tatgattttgacattaaaagataaatatgctactaagtaagcaaaaaactttttagacgagatgacacgaatctctttcaagttaactaagattttcttc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28505476 |
tatgattttgacattaaaagataaatatgctactaagtaagcaaaaaactttttagacgagatgacacgaatctctttcaagttaactaagattttgttc |
28505377 |
T |
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| Q |
317 |
ga |
318 |
Q |
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|| |
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| T |
28505376 |
ga |
28505375 |
T |
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