View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4865_low_5 (Length: 278)
Name: NF4865_low_5
Description: NF4865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4865_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 9257949 - 9257695
Alignment:
| Q |
18 |
caaagactcctagaacaccaagaatgtctttgacaccaaggtttattacccctttgggaagtcctatgaggaaagctttgagattaactaagcttgatcc |
117 |
Q |
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| T |
9257949 |
caaagactcctagaacaccaagaatgtctttgacaccaaggtttattacccctttgggaagtcctatgaggaaagctttgagattaactaagcttgatcc |
9257850 |
T |
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| Q |
118 |
tcaagatgcttggcttccaattactgagtcaagaaatggtaacaaatattatgctgcttttcatactctttgttctgggattggtattcaggctcttgtt |
217 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9257849 |
tcaagatgcttggcttccaataactgagtcaagaaatggtaacaaatattatgctgcttttcatactctttgttctgggattggtattcaggctcttgtt |
9257750 |
T |
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| Q |
218 |
cttcctgttgccttcactattcttggttggtaagtttcatatagtttcatctctc |
272 |
Q |
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| T |
9257749 |
cttcctgttgccttcactattcttggttggtaagtttcatatagtttcatttctc |
9257695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 9244283 - 9244047
Alignment:
| Q |
20 |
aagactcctagaacaccaagaatgtctttgac---accaaggtttattacccctttgggaagtcctatgaggaaagctttgagattaactaagcttgatc |
116 |
Q |
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| T |
9244283 |
aagacccctagaacaccaagaatgtcttttaccccaccaaggtttattacccctttaggaacacctgttaggaatgctttgagactaatcaaacttgatc |
9244184 |
T |
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| Q |
117 |
ctcaagatgcttggcttccaattactgagtcaagaaatggtaacaaatattatgctgcttttcatactctttgttctgggattggtattcaggctcttgt |
216 |
Q |
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| T |
9244183 |
ctcaagatgcttggcttccaataactgagtcaagaaatggtaacaaatattatgctgcttttcatactctttgttctgggattggtattcaagctcttgt |
9244084 |
T |
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| Q |
217 |
tcttcctgttgccttcactattcttggttggtaagtt |
253 |
Q |
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| T |
9244083 |
tcttcctgttgctttcactattcttggttggtaagtt |
9244047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 147
Target Start/End: Original strand, 3099782 - 3099825
Alignment:
| Q |
104 |
actaagcttgatcctcaagatgcttggcttccaattactgagtc |
147 |
Q |
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| T |
3099782 |
actaagcttaatcctcaagatgcatggcttccaattaccgagtc |
3099825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 248
Target Start/End: Complemental strand, 53781796 - 53781715
Alignment:
| Q |
167 |
tatgctgcttttcatactctttgttctgggattggtattcaggctcttgttcttcctgttgccttcactattcttggttggt |
248 |
Q |
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||||||||||||||| ||||||||||| ||||| |||| || |||||||||||| | |||||||| | |||||| |||| |
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| T |
53781796 |
tatgctgcttttcatttgctttgttctggaattggatttcaagcacttgttcttcctttggccttcaccactcttggctggt |
53781715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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