View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4865_low_9 (Length: 240)

Name: NF4865_low_9
Description: NF4865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4865_low_9
NF4865_low_9
[»] chr4 (4 HSPs)
chr4 (1-213)||(2442448-2442660)
chr4 (108-167)||(29057781-29057840)
chr4 (72-169)||(41805149-41805246)
chr4 (114-154)||(52088504-52088544)
[»] chr1 (4 HSPs)
chr1 (14-167)||(50984334-50984485)
chr1 (89-169)||(52282263-52282343)
chr1 (85-167)||(20291139-20291221)
chr1 (88-169)||(51795584-51795664)
[»] chr5 (2 HSPs)
chr5 (88-169)||(34597646-34597727)
chr5 (90-132)||(6237653-6237695)
[»] chr8 (4 HSPs)
chr8 (88-169)||(9042592-9042673)
chr8 (32-167)||(34020052-34020185)
chr8 (104-167)||(37767520-37767583)
chr8 (89-166)||(41456073-41456150)
[»] chr2 (3 HSPs)
chr2 (89-168)||(2758463-2758542)
chr2 (106-169)||(38356839-38356902)
chr2 (109-166)||(2757738-2757795)
[»] chr7 (2 HSPs)
chr7 (89-167)||(24555977-24556055)
chr7 (106-142)||(47014536-47014572)
[»] chr3 (2 HSPs)
chr3 (88-144)||(51291714-51291770)
chr3 (40-150)||(11354256-11354366)
[»] chr6 (2 HSPs)
chr6 (88-169)||(24470224-24470305)
chr6 (89-169)||(9880570-9880650)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 2442660 - 2442448
Alignment:
Q  1 ttgatgcataaagatgtttttagctttaactgaataatcacagtgttaagttgtaaggggtgtatctatccattttaagatatcttgggggaggttagtg 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2442660 ttgatgcataaagatgtttttagctttaacagaataatcacagtgttaagttgtaaggggtgtatctatccattttaagatatcttgggggaggtgagtg 2442561  T
Q  101 tcaagtttaaaattagaggggatgtttgtgtcgtttaaagagacctcaggggaggttagtgtaattttctcatatgtttatgataaaatgtaaaagatta 200  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||    
T  2442560 tcaagtttaagactagaggggatgtttgtgtcgtttaaagagacctcaggggaggtcagtgtaattttcctatatgtttatgataaaatgtaaaagatta 2442461  T
Q  201 gtcatatgcttat 213  Q
    |||||||||||||    
T  2442460 gtcatatgcttat 2442448  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 29057840 - 29057781
Alignment:
Q  108 taaaattagaggggatgtttgtgtcgtttaaagagacctcaggggaggttagtgtaattt 167  Q
    ||||| |||| |||||||||||||| || |||||||||||||||||||| ||||||||||    
T  29057840 taaaactagaagggatgtttgtgtcattcaaagagacctcaggggaggtcagtgtaattt 29057781  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 169
Target Start/End: Complemental strand, 41805246 - 41805149
Alignment:
Q  72 attttaagatatcttgggggaggttagtgtcaagtttaaaattagaggggatgtttgtgtcgtttaaagagacctcaggggaggttagtgtaattttc 169  Q
    ||||||| | ||||| |||||||||  |||| | | ||||| |||||| | |||||||||  |||||||||||||  ||||||||  |||||||||||    
T  41805246 attttaaaagatcttaggggaggtttatgtctattataaaactagaggaggtgtttgtgttatttaaagagaccttgggggaggtctgtgtaattttc 41805149  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 52088544 - 52088504
Alignment:
Q  114 tagaggggatgtttgtgtcgtttaaagagacctcaggggag 154  Q
    |||||||| ||| |||||||||||||||||||||| |||||    
T  52088544 tagagggggtgtctgtgtcgtttaaagagacctcaagggag 52088504  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 167
Target Start/End: Original strand, 50984334 - 50984485
Alignment:
Q  14 atgtttttagctttaactgaataatcacagtgttaagttgtaaggggtgtatctatccattttaagatatcttgggggaggttagtgtcaagtttaaaat 113  Q
    ||||||| ||||||||| ||| |||||| |||||||| ||||||||||||||||||| |||||||||||  || || |||||||||||  | |||||||     
T  50984334 atgttttgagctttaacagaacaatcacggtgttaagatgtaaggggtgtatctatctattttaagataaattaggagaggttagtgttgaatttaaaac 50984433  T
Q  114 tagaggggatgtttgtgtcgtttaaagagacctcaggggaggttagtgtaattt 167  Q
    ||||| || || |  |||| |||||||  ||||| |||||||| ||||||||||    
T  50984434 tagagagggtgct--tgtcatttaaaggtacctcgggggaggtcagtgtaattt 50984485  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 52282343 - 52282263
Alignment:
Q  89 gggaggttagtgtcaagtttaaaattagaggggatgtttgtgtcgtttaaagagacctcaggggaggttagtgtaattttc 169  Q
    ||||||||| |||| | | ||||| ||||| |||||||||||| |||| || | |||||||||||||||||||||||||||    
T  52282343 gggaggttaatgtctattataaaactagagaggatgtttgtgttgtttgaacaaacctcaggggaggttagtgtaattttc 52282263  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 167
Target Start/End: Complemental strand, 20291221 - 20291139
Alignment:
Q  85 ttgggggaggttagtgtcaagtttaaaattagaggggatgtttgtgtcgtttaaagagacctcaggggaggttagtgtaattt 167  Q
    |||| |||||||| |||| | | ||||| |||||||| |||||||||  |||||  | |||||||||||||||||||| ||||    
T  20291221 ttggaggaggttaatgtctattataaaactagagggggtgtttgtgttatttaagaaaacctcaggggaggttagtgttattt 20291139  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 169
Target Start/End: Complemental strand, 51795664 - 51795584
Alignment:
Q  88 ggggaggttagtgtcaagtttaaaattagaggggatgtttgtgtcgtttaaagagacctcaggggaggttagtgtaattttc 169  Q
    |||||||||||| |  | ||||||| |||||||| |||||||| | |||||||||| ||||  |||||| ||||||||||||    
T  51795664 ggggaggttagtatatattttaaaactagagggggtgtttgtgccatttaaagagatctca-tggaggtaagtgtaattttc 51795584  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 169
Target Start/End: Original strand, 34597646 - 34597727
Alignment:
Q  88 ggggaggttagtgtcaagtttaaaattagaggggatgtttgtgtcgtttaaagagacctcaggggaggttagtgtaattttc 169  Q
    ||||||| ||||||  | ||||||||||||||||||||||||||  ||||| ||||||||||||||||| | ||||||||||    
T  34597646 ggggaggctagtgtttattttaaaattagaggggatgtttgtgttatttaaggagacctcaggggaggtcaatgtaattttc 34597727  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 132
Target Start/End: Original strand, 6237653 - 6237695
Alignment:
Q  90 ggaggttagtgtcaagtttaaaattagaggggatgtttgtgtc 132  Q
    ||||||||||||| | |||||||||||||||||||||||||||    
T  6237653 ggaggttagtgtctattttaaaattagaggggatgtttgtgtc 6237695  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 169
Target Start/End: Complemental strand, 9042673 - 9042592
Alignment:
Q  88 ggggaggttagtgtcaagtttaaaattagaggggatgtttgtgtcgtttaaagagacctcaggggaggttagtgtaattttc 169  Q
    ||||||||| ||||| | ||| ||||||||||||| || | |||| ||||||||||||||||||||||| | ||||||||||    
T  9042673 ggggaggtttgtgtctatttttaaattagaggggaagtctttgtcatttaaagagacctcaggggaggtcaatgtaattttc 9042592  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 167
Target Start/End: Original strand, 34020052 - 34020185
Alignment:
Q  32 gaataatcacagtgttaagttgtaaggggtgtatctatccattttaagatatcttgggggaggttagtgtcaagtttaaaattagaggggatgtttgtgt 131  Q
    |||||||||| ||||||| ||||||||| || |  |||| ||||||||||||| |   ||||||| ||||||| ||||||| |||||||| ||||| |||    
T  34020052 gaataatcacggtgttaacttgtaagggatgcaggtatctattttaagatatc-tcatggaggtttgtgtcaattttaaaactagagggg-tgtttatgt 34020149  T
Q  132 cgtttaaagagacctcaggggaggttagtgtaattt 167  Q
    ||||| ||||| | |||| |||||| | ||||||||    
T  34020150 cgtttgaagaggcttcagaggaggtcattgtaattt 34020185  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 167
Target Start/End: Original strand, 37767520 - 37767583
Alignment:
Q  104 agtttaaaattagaggggatgtttgtgtcgtttaaagagacctcaggggaggttagtgtaattt 167  Q
    |||| |||| ||||||||||||||||||  |||||  | |||||||||||||||||||||||||    
T  37767520 agttaaaaactagaggggatgtttgtgttatttaacaatacctcaggggaggttagtgtaattt 37767583  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 166
Target Start/End: Original strand, 41456073 - 41456150
Alignment:
Q  89 gggaggttagtgtcaagttt-aaaattagaggggatgtttgtgtcgtttaaagagacctcaggggaggttagtgtaatt 166  Q
    ||||||||||||| |||||| ||||||||||| |||||  ||||| |||  | |||||||||||||||| |||||||||    
T  41456073 gggaggttagtgt-aagtttaaaaattagaggagatgtcagtgtcattttcatagacctcaggggaggtgagtgtaatt 41456150  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 168
Target Start/End: Original strand, 2758463 - 2758542
Alignment:
Q  89 gggaggttagtgtcaagtttaaaattagaggggatgtttgtgtcgtttaaagagacctcaggggaggttagtgtaatttt 168  Q
    |||||||||||||  ||||||||||||||||||||||| ||||  |||||  |||||| | ||||||| |||||||||||    
T  2758463 gggaggttagtgtttagtttaaaattagaggggatgttagtgttatttaagaagaccttaagggaggtgagtgtaatttt 2758542  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 38356902 - 38356839
Alignment:
Q  106 tttaaaattagaggggatgtttgtgtcgtttaaagagacctcaggggaggttagtgtaattttc 169  Q
    ||||||| |||||||| |||||||||| | | || |||||||||||||||| ||||||||||||    
T  38356902 tttaaaactagagggggtgtttgtgtcatattaatagacctcaggggaggtgagtgtaattttc 38356839  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 2757795 - 2757738
Alignment:
Q  109 aaaattagaggggatgtttgtgtcgtttaaagagacctcaggggaggttagtgtaatt 166  Q
    |||||||||||||||||| ||||  |||||  |||||||| ||||||| |||||||||    
T  2757795 aaaattagaggggatgttagtgttatttaagaagacctcaagggaggtgagtgtaatt 2757738  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 167
Target Start/End: Original strand, 24555977 - 24556055
Alignment:
Q  89 gggaggttagtgtcaagtttaaaattagaggggatgtttgtgtcgtttaaagagacctcaggggaggttagtgtaattt 167  Q
    ||||||||| |||| | | | ||| |||||||| |||||||||||||| || | |||||||||||||||||||||||||    
T  24555977 gggaggttaatgtctattattaaactagagggggtgtttgtgtcgtttgaacaaacctcaggggaggttagtgtaattt 24556055  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 47014572 - 47014536
Alignment:
Q  106 tttaaaattagaggggatgtttgtgtcgtttaaagag 142  Q
    |||||||||||| |||||||||||||| |||||||||    
T  47014572 tttaaaattagacgggatgtttgtgtcatttaaagag 47014536  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 51291770 - 51291714
Alignment:
Q  88 ggggaggttagtgtcaagtttaaaattagaggggatgtttgtgtcgtttaaagagac 144  Q
    |||||||||| |||| | |||||||||||||||| |||||||| | |||||||||||    
T  51291770 ggggaggttaatgtctattttaaaattagagggggtgtttgtgccatttaaagagac 51291714  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 150
Target Start/End: Original strand, 11354256 - 11354366
Alignment:
Q  40 acagtgttaagttgtaaggggtg-tatctatccattttaagatatcttgggggaggttagtgtcaagtttaaaattagaggggatgtttgtgtcgtttaa 138  Q
    |||||||||||||| |||||| | ||| |||| |||| |||| |  ||| |||| ||||||||| | ||||||| || ||||| |||||||||| || ||    
T  11354256 acagtgttaagttgaaaggggaggtatttatctattt-aagagactttgagggaagttagtgtctattttaaaactaaagggggtgtttgtgtcattcaa 11354354  T
Q  139 agagacctcagg 150  Q
    ||||||||||||    
T  11354355 agagacctcagg 11354366  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 169
Target Start/End: Complemental strand, 24470305 - 24470224
Alignment:
Q  88 ggggaggttagtgtcaagtttaaaattagaggggatgtttgtgtcgtttaaagagacctcaggggaggttagtgtaattttc 169  Q
    |||||||||||| |  | |||||||||||| ||||||||||||   ||||||||| ||||| || |||| | ||||||||||    
T  24470305 ggggaggttagtatatattttaaaattagaagggatgtttgtgcaatttaaagagtcctcaaggaaggtaaatgtaattttc 24470224  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 9880650 - 9880570
Alignment:
Q  89 gggaggttagtgtcaagtttaaaattagaggggatgtttgtgtcgtttaaagagacctcaggggaggttagtgtaattttc 169  Q
    |||||||| ||||| | ||||||| |||||||| ||| | |||  |||||||| | |||| ||||||| ||||||||||||    
T  9880650 gggaggttggtgtctattttaaaactagagggggtgtctttgttatttaaagaaaactcaagggaggtgagtgtaattttc 9880570  T

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