View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4866_high_1_N (Length: 646)
Name: NF4866_high_1_N
Description: NF4866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4866_high_1_N |
 | |
|
| [»] scaffold0021 (1 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 537; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 8 - 642
Target Start/End: Original strand, 11780115 - 11780751
Alignment:
| Q |
8 |
acatcatcttgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacat |
107 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11780115 |
acatcatcgtgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccagctcctgtgggcgcgaatgattatgttccacat |
11780214 |
T |
|
| Q |
108 |
catccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
11780215 |
catccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgcttcactctctcagaatgcatttcatc |
11780314 |
T |
|
| Q |
208 |
atgcaaccggg-aaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgt |
306 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11780315 |
atgcaatcggggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaacgctgtcaaacacgttatgtagtggaaagctgaaagatgt |
11780414 |
T |
|
| Q |
307 |
tgacgacaatgatgtcctaggcatagggaccgtcatatgagaagtaacaactgatgatgtagaattaacaaccggccccatgtgtgagctagcaataata |
406 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11780415 |
tgacgacaatgatgtcctgggcatagggaccgtcatatgagaagtaacaactgctgaagtagaattaacaaccgaccccatgtgtgagctagcaataata |
11780514 |
T |
|
| Q |
407 |
gggtccggaatagcctgagaaggcggagctagtgttgaaggggcagtagtaaccggagctctctgagaagtgctgattgtcgaagtaatcggaaccggaa |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
11780515 |
gggtccggaatagcctgagaaggcggagctagtgttgaaggggcagtagtaaccggaactctctgagaagtggtgactgtcgaagtaatcggaaccggaa |
11780614 |
T |
|
| Q |
507 |
cccaagtccaagtacttccattggccgaagtggaag-ccccccatctgtgtgctgtcgagttattgtagggggtgctttctcagccacaacgatttgttt |
605 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
11780615 |
cctaagtccaagtacttccattggccgaagtggaagcccccccatttgtgtgttgtcgagttattgtagggagtgctttctcagccacaacgatttgttt |
11780714 |
T |
|
| Q |
606 |
cccacgatcatctttatcctttggctgttgatgatgt |
642 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
11780715 |
cccacgatcatctttatcctttggttgttgaggatgt |
11780751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 29 - 201
Target Start/End: Original strand, 10424593 - 10424765
Alignment:
| Q |
29 |
gatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaa |
128 |
Q |
| |
|
||||||||||||||| |||| | || |||||| |||||||||||||| ||| ||||||||||| |||||| |||||||||||| || ||||| || | |
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|
| T |
10424593 |
gatgaatgtggtacacgctcgtaggaacccttaggactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagaga |
10424692 |
T |
|
| Q |
129 |
catcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac |
201 |
Q |
| |
|
|||| || || || |||||||||| |||||||||||||| ||||| | || |||||||||||||||||||| |
|
|
| T |
10424693 |
catcatccaccacggggttctccaatacctcccgcgatgtcagatgcaattgttccactctctcagaatgcac |
10424765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 199
Target Start/End: Original strand, 1624838 - 1625008
Alignment:
| Q |
29 |
gatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaa |
128 |
Q |
| |
|
||||||||||||||| |||| |||| |||||| |||||||| ||||| ||| | |||| |||| ||| |||||||||||||| | ||||| ||| | |
|
|
| T |
1624838 |
gatgaatgtggtacacgctcgtgggaacccttgggactctcgaccagctcccgcgggctcgaactattgtgttccacatcatcataaagcgtaacagtga |
1624937 |
T |
|
| Q |
129 |
catcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgc |
199 |
Q |
| |
|
|||| || || ||||| ||||| |||||||||||||| ||||| |||| || ||||||||| ||||| |
|
|
| T |
1624938 |
catcatccaccgtggggttccccaacacctcccgcgatgtcagatgcaactgttctactctctcaaaatgc |
1625008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 30731537 - 30731478
Alignment:
| Q |
53 |
gcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatcc |
112 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||| | ||||| |||||||||| ||||| |
|
|
| T |
30731537 |
gcacccttgggactctccaccagctcctgtgggctcacatgatcatgttccacaccatcc |
30731478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 302; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 17 - 560
Target Start/End: Original strand, 17158540 - 17159087
Alignment:
| Q |
17 |
tgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgaga |
116 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||| | ||||| ||||||||||||| | || ||| ||||||||||||| |||||||||||||||| |
|
|
| T |
17158540 |
tgcttaacaattgatgaatgtagtacatgctcatggtcccccttgggactctccaccaactactaggggtgcgaatgattatgctccacatcatccgaga |
17158639 |
T |
|
| Q |
117 |
gcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctcc-actctctcagaatgcacttcatcatgc---a |
212 |
Q |
| |
|
| || | ||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| ||| | |
|
|
| T |
17158640 |
gtgtcgcagtaacatcgtcaaccacagggttctccaactcctcccgcgatatcggatgcgactgatcccactctctcagaatgcacttcatcgtgcgcaa |
17158739 |
T |
|
| Q |
213 |
accgggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacga |
312 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
17158740 |
actaggaaacaatttcaaacactggcgtagcgagtggcagcttttcactagaaatgttgtcaaacacgttatgtagtggaaagctgaaaggtgttgacga |
17158839 |
T |
|
| Q |
313 |
caatgatgtcctaggcatagggaccgtcatatgagaagtaacaactgatgatgtagaattaacaaccggccccatgtgtgagctagcaataatagggtcc |
412 |
Q |
| |
|
|||||| ||| | ||||||||||| |||| |||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||| || || || |
|
|
| T |
17158840 |
caatgacgtcttgggcatagggactgtcaactgagaagtaacaactgctgaagtagaagtaacaaccggccccatgtgtgagctagcaatagtacggacc |
17158939 |
T |
|
| Q |
413 |
ggaatagcctgagaaggcggagctagtgttgaaggggcagtagtaaccggagctctctgagaagtgctgattgtcgaagtaatcggaaccggaacccaag |
512 |
Q |
| |
|
|||||||||||||||| | |||| ||||||||||||| |||||||||| || |||||||| ||||| ||| ||| ||||||||||||||||||||||||| |
|
|
| T |
17158940 |
ggaatagcctgagaagacagagccagtgttgaaggggtagtagtaaccagaactctctgaaaagtggtgactgttgaagtaatcggaaccggaacccaag |
17159039 |
T |
|
| Q |
513 |
tccaagtacttccattggccgaagtggaagccccccatctgtgtgctg |
560 |
Q |
| |
|
|| | ||||| ||||||||| |||| |||||||||||| ||||||||| |
|
|
| T |
17159040 |
tcgaggtactgccattggccaaagttgaagccccccatatgtgtgctg |
17159087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 642
Target Start/End: Complemental strand, 12102070 - 12101441
Alignment:
| Q |
11 |
tcatcttgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattat----gttccaca |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||| | |||||||||||||||| |||||||| |
|
|
| T |
12102070 |
tcatcgtgctcaacaattgatgaatgtggtacatgctcataggcacccttgggactctccaccagctcccgggggcgcgaatgattatatatgttccaca |
12101971 |
T |
|
| Q |
107 |
tcatccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcat |
206 |
Q |
| |
|
| | | | ||||||||||||| | | ||||||||||||||||||||||||||| ||| | |||||| ||||||||| |||||| |||| |
|
|
| T |
12101970 |
t---------gtatcgtagtaacatcgtcagccatggggttctccaactcctcccgcgatgtcgaatgtgtttgctccgctctctcaggatgcacgtcat |
12101880 |
T |
|
| Q |
207 |
catgcaacc---gggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaaga |
303 |
Q |
| |
|
| |||| |||||| ||||||||||||| | || ||| || | |||||||| |||||||| |||| |||||||||||| ||||||||||||||||| |
|
|
| T |
12101879 |
cgtgcacaattggggaaataatttcaaacactcgtgttgcttgtggtagctcctcgctagaaatattgttaaacacgttatgtagtggaaagctgaaaga |
12101780 |
T |
|
| Q |
304 |
tgttgacgacaatgatgtcctaggcatagggac-----cgtcatatgagaagtaacaactgatgatgtagaattaacaaccggccccatgtgtgagctag |
398 |
Q |
| |
|
||||||||||||||| ||| ||||||||| || | |||| || |||||| |||||| ||| ||||| | |||||||| ||||||| |||||| || |
|
|
| T |
12101779 |
tgttgacgacaatgacgtcataggcatagtgattccttcatcatctgtgaagtatcaactgttgaagtagagtgaacaaccgaccccatgggtgagcaag |
12101680 |
T |
|
| Q |
399 |
caataatagggtccggaatagcctgagaaggcggagctagtgttgaaggggcagtagtaaccggagctctctgagaagtgctgattgtcgaagtaatcgg |
498 |
Q |
| |
|
||||| ||||||||||| |||||||| |||| |||||||||||||||| ||| ||| || ||||||||| |||| ||| | ||||||||||| | |
|
|
| T |
12101679 |
------taggggccggaatagccagagaaggctgagccagtgttgaaggggcagaagtgaccagaactctctgagtagtggtgactatcgaagtaatcag |
12101586 |
T |
|
| Q |
499 |
aaccggaacccaagtccaagtacttccattggccgaagtggaagcc-ccccatctgtgtgctgtcgagttattgtagggggtgctttctcagccacaacg |
597 |
Q |
| |
|
|| ||||||||||||||| ||||| |||||||| |||||||||||| |||||||| ||||||| |||||| || |||||||||||||||||||||||| |
|
|
| T |
12101585 |
aatcggaacccaagtccaggtactgccattggctgaagtggaagcctccccatctatgtgctggcgagttgttttagggggtgctttctcagccacaata |
12101486 |
T |
|
| Q |
598 |
atttgtttcccacgatcatctttatcctttggctgttgatgatgt |
642 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
12101485 |
atttgttttccacgatcatctttatcctttggcggttgaggatgt |
12101441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 4e-55; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 11 - 352
Target Start/End: Complemental strand, 14977814 - 14977470
Alignment:
| Q |
11 |
tcatcttgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcat |
110 |
Q |
| |
|
||||| |||| |||||| ||||||||||| ||||||||||||| |||||| |||||||||||||| ||| | ||| ||||||||||||||||||||||| |
|
|
| T |
14977814 |
tcatcatgctaaacaatggatgaatgtggaacatgctcatgggaacccttgggactctccaccagctcccgcggggtcgaatgattatgttccacatcat |
14977715 |
T |
|
| Q |
111 |
ccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatcat- |
209 |
Q |
| |
|
|| ||||| | ||||||||||||||| || ||| || ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | |
|
|
| T |
14977714 |
aagatagcgtagcagtaacatcgtcaaccgttgggatctgcacctcctcccgcgatgtcggatgcgactgctccactctctcggaatgcacgtcatcgtg |
14977615 |
T |
|
| Q |
210 |
-gcaac-cgggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgtt |
307 |
Q |
| |
|
||||| |||| |||| |||| |||||| |||||| | ||| || |||||||||||| | ||||||| ||| || | ||| ||||| ||||||||| |
|
|
| T |
14977614 |
cgcaactggggacacaaactcaatcactggtgtagcttctggcaacttctcactagaaatactatcaaacatgttgtgtaatgggaagctaaaagatgtt |
14977515 |
T |
|
| Q |
308 |
gacgacaatgatgtcctaggcatagggaccgtcatatgagaagta |
352 |
Q |
| |
|
|| ||||| || ||||| |||| ||||||| |||| ||||||||| |
|
|
| T |
14977514 |
gatgacaaagacgtcctgggcacagggaccatcatctgagaagta |
14977470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 439 - 636
Target Start/End: Complemental strand, 14977410 - 14977212
Alignment:
| Q |
439 |
tgttgaaggggcagtagtaaccggagctctctgagaagtgctgattgtcgaagtaatcggaaccggaacccaagtccaagtacttccattggccgaagtg |
538 |
Q |
| |
|
||||| || ||||| |||||| ||| |||||||||| || | |||||||||||||||||||||||||||||||| |||||||| |||||||| |||||| |
|
|
| T |
14977410 |
tgttgcagaggcagaagtaactggaactctctgagaggtagtaattgtcgaagtaatcggaaccggaacccaagtacaagtactgccattggctgaagtg |
14977311 |
T |
|
| Q |
539 |
gaagc-cccccatctgtgtgctgtcgagttattgtagggggtgctttctcagccacaacgatttgtttcccacgatcatctttatcctttggctgttga |
636 |
Q |
| |
|
||||| |||||||| | |||| ||||| | | ||||||| ||| |||| | |||| |||||||| |||||||||| |||||| |||||| ||||| |
|
|
| T |
14977310 |
gaagctcccccatcattctgctttcgagatggtttagggggcgctgcctcaacgacaataatttgtttaccacgatcatttttatcatttggcggttga |
14977212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 144 - 315
Target Start/End: Original strand, 11776308 - 11776482
Alignment:
| Q |
144 |
ggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatcatg--caac-cgggaaacaatttcaaacactggcgt |
240 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||| ||||| || |||| ||||||||| || |||||||| || |
|
|
| T |
11776308 |
ggttctccaactcctcccgcgatgactgatgcaactgctccactctctcagaatgcacatcatcgtgcacaacaggggaaacaacctctaacactggtgt |
11776407 |
T |
|
| Q |
241 |
agctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaa |
315 |
Q |
| |
|
| | || ||| ||||||| |||||| ||||||||| | ||||| | ||||||||||||||| |||||||||| |
|
|
| T |
11776408 |
aacatgtggcaactcctcatgagaaattttgtcaaacgcattatgtaatggaaagctgaaagagtttgacgacaa |
11776482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 9352421 - 9352477
Alignment:
| Q |
144 |
ggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgca |
200 |
Q |
| |
|
||||||||||| |||| ||||||||| || || |||| ||||||||||||||||||| |
|
|
| T |
9352421 |
ggttctccaacacctctcgcgatgtcagacgcaactgttccactctctcagaatgca |
9352477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 24353638 - 24353686
Alignment:
| Q |
144 |
ggttctccaactcctcccgcgatgtcggatgcgactgctccactctctc |
192 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||| | ||||||| |
|
|
| T |
24353638 |
ggttctccaactcctcccgcgatgtctgatgcaactgcttcgctctctc |
24353686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 543
Target Start/End: Original strand, 11776668 - 11776713
Alignment:
| Q |
498 |
gaaccggaacccaagtccaagtacttccattggccgaagtggaagc |
543 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||| ||||||| |
|
|
| T |
11776668 |
gaaccggaacccacgtccaagcgcttccattggccgaaatggaagc |
11776713 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 8e-32; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 29 - 315
Target Start/End: Original strand, 5781902 - 5782191
Alignment:
| Q |
29 |
gatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaa |
128 |
Q |
| |
|
|||||| ||| |||| ||||||||| |||||| |||||||||||||| ||| | ||| ||||||||| |||||||||||||| || || || ||||| |
|
|
| T |
5781902 |
gatgaacgtgatacacgctcatgggaacccttgggactctccaccagctcccgcgggatcgaatgattgtgttccacatcatcagaaagtgtaacagtaa |
5782001 |
T |
|
| Q |
129 |
catcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatcat--gcaac-cgggaaacaat |
225 |
Q |
| |
|
|||| || || |||||||||||||||| |||||||||| ||||| |||||||| |||||||||||||||| ||||| | ||||| ||||||||| |
|
|
| T |
5782002 |
catcatccaccgtgtggttctccaactccttccgcgatgtctgatgcaactgctcctctctctcagaatgcacgtcatcgtgcgcaacaagggaaacaac |
5782101 |
T |
|
| Q |
226 |
ttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaa |
315 |
Q |
| |
|
|| |||||||||||||| | ||||||||||| |||||| | | ||||| || || | ||||||||||||||| |||||||||| |
|
|
| T |
5782102 |
ctctaacactggcgtagcacatggcagctcctcaggagaaattctattgaacacattgtgtaatggaaagctgaaagagtttgacgacaa |
5782191 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 29 - 315
Target Start/End: Original strand, 19069420 - 19069709
Alignment:
| Q |
29 |
gatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaa |
128 |
Q |
| |
|
|||||||||| || | |||||||| |||||| |||||||||||||| ||||| ||| ||||||||| ||||||||||||| || || || ||||| |
|
|
| T |
19069420 |
gatgaatgtgatatacgctcatggaaacccttgggactctccaccagctcctgcgggatcgaatgattgtgttccacatcattagaaagggtaacagtaa |
19069519 |
T |
|
| Q |
129 |
catcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatcat--gcaac-cgggaaacaat |
225 |
Q |
| |
|
|||| || || |||||||||||||||| ||||||||| ||||| || ||||| |||||||||||||||| ||||| | ||||| |||||| || |
|
|
| T |
19069520 |
catcttccaccgtggggttctccaactcctctcgcgatgtctgatgcaaccgctcctctctctcagaatgcacgtcatcgtgcgcaacaggggaaataac |
19069619 |
T |
|
| Q |
226 |
ttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaa |
315 |
Q |
| |
|
|| |||||||||||||| || ||||||||| | |||||| ||||||||| | || || | ||||||||||||||| |||||||||| |
|
|
| T |
19069620 |
ctctaacactggcgtagcacgtggcagctccttaggagaaattttgtcaaacgcattgtgtaatggaaagctgaaagagtttgacgacaa |
19069709 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 17764060 - 17763963
Alignment:
| Q |
41 |
acatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaac |
138 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||| ||| | || |||||||||||||||||||||| || ||||| | ||||||||| ||||| |
|
|
| T |
17764060 |
acatgctcatgggaacccttgagactctccaccagctcccgccagcttaaatgattatgttccacatcatcagaaagcgtagcagtaacatcatcaac |
17763963 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 11724758 - 11724701
Alignment:
| Q |
144 |
ggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac |
201 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| | ||||| |||||| ||||||||| |
|
|
| T |
11724758 |
ggttctccaacacctcccgcgatgtcagatgcaattgctctgctctcttagaatgcac |
11724701 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 34 - 201
Target Start/End: Complemental strand, 16311799 - 16311632
Alignment:
| Q |
34 |
atgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcg |
133 |
Q |
| |
|
||||| |||| |||| | || |||||| |||||||||||||| ||| ||||||||||| |||||| |||||||||||| || ||||| || ||||| |
|
|
| T |
16311799 |
atgtgatacacgctcgtaggaacccttgggactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatca |
16311700 |
T |
|
| Q |
134 |
tcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac |
201 |
Q |
| |
|
|| || || ||||||||||| |||||||||||||| ||||| | || |||||| ||||| ||||||| |
|
|
| T |
16311699 |
tccaccacggggttctccaacacctcccgcgatgtcagatgcaattgttccactttctcaaaatgcac |
16311632 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 34 - 201
Target Start/End: Complemental strand, 18488583 - 18488416
Alignment:
| Q |
34 |
atgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcg |
133 |
Q |
| |
|
||||| |||| |||| | || |||||| |||||||||||||| ||| ||||||||||| |||||| |||||||||||| || ||||| || ||||| |
|
|
| T |
18488583 |
atgtgatacacgctcgtaggaacccttgggactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatca |
18488484 |
T |
|
| Q |
134 |
tcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac |
201 |
Q |
| |
|
|| || || ||||||||||| |||||||||||||| ||||| | || |||||| ||||| ||||||| |
|
|
| T |
18488483 |
tccaccacggggttctccaacacctcccgcgatgtcagatgcaattgttccactttctcaaaatgcac |
18488416 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 34 - 201
Target Start/End: Complemental strand, 18492793 - 18492626
Alignment:
| Q |
34 |
atgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcg |
133 |
Q |
| |
|
||||| |||| |||| | || |||||| |||||||||||||| ||| ||||||||||| |||||| |||||||||||| || ||||| || ||||| |
|
|
| T |
18492793 |
atgtgatacacgctcgtaggaacccttgggactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatca |
18492694 |
T |
|
| Q |
134 |
tcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac |
201 |
Q |
| |
|
|| || || ||||||||||| |||||||||||||| ||||| | || |||||| ||||| ||||||| |
|
|
| T |
18492693 |
tccaccacggggttctccaacacctcccgcgatgtcagatgcaattgttccactttctcaaaatgcac |
18492626 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 212
Target Start/End: Original strand, 19829018 - 19829181
Alignment:
| Q |
49 |
atgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatggttc |
148 |
Q |
| |
|
||||| |||||| |||||||||||||| ||| | ||| ||||||||| |||||||||||||| || || || ||||||||||| ||| ||||| |
|
|
| T |
19829018 |
atgggaacccttgggactctccaccagctcccgcgggttcgaatgattgtgttccacatcatcagaaagtgtaacagtaacatcgttcactgtggggttc |
19829117 |
T |
|
| Q |
149 |
tccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatcatgca |
212 |
Q |
| |
|
||||||||| || | |||||| | ||| || ||||| |||||||||||||||| ||||| |||| |
|
|
| T |
19829118 |
tccaactccccctgtgatgtctggtgcaaccgctcctctctctcagaatgcacgtcatcgtgca |
19829181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 63 - 201
Target Start/End: Complemental strand, 16314161 - 16314023
Alignment:
| Q |
63 |
gactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccg |
162 |
Q |
| |
|
||||||||||||| ||| ||||||||||| |||||| |||||||||||| || ||||| || ||||| || || || ||||||||||| ||||||| |
|
|
| T |
16314161 |
gactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatcatccaccacggggttctccaacacctcccg |
16314062 |
T |
|
| Q |
163 |
cgatgtcggatgcgactgctccactctctcagaatgcac |
201 |
Q |
| |
|
|||||| ||||| | || |||||| ||||| ||||||| |
|
|
| T |
16314061 |
tgatgtcagatgcaattgttccactttctcaaaatgcac |
16314023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 63 - 201
Target Start/End: Complemental strand, 18495155 - 18495017
Alignment:
| Q |
63 |
gactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccg |
162 |
Q |
| |
|
||||||||||||| ||| ||||||||||| |||||| |||||||||||| || ||||| || ||||| || || || ||||||||||| ||||||| |
|
|
| T |
18495155 |
gactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatcatccaccacggggttctccaacacctcccg |
18495056 |
T |
|
| Q |
163 |
cgatgtcggatgcgactgctccactctctcagaatgcac |
201 |
Q |
| |
|
|||||| ||||| | || |||||| ||||| ||||||| |
|
|
| T |
18495055 |
tgatgtcagatgcaattgttccactttctcaaaatgcac |
18495017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 45 - 201
Target Start/End: Complemental strand, 17459587 - 17459431
Alignment:
| Q |
45 |
gctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatg |
144 |
Q |
| |
|
||||||||| ||| || |||||||||||| ||| | |||| ||||||||| ||||||||||||| || ||||| ||| |||||||| |||| | |
|
|
| T |
17459587 |
gctcatggggaccgttgagactctccaccatctcccgcgggctcgaatgattgtgttccacatcattagaaagcgtaacagtgacatcgtccactatggg |
17459488 |
T |
|
| Q |
145 |
gttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac |
201 |
Q |
| |
|
||||||||||| |||||||||||||||||| | ||||| ||||||| |||||||| |
|
|
| T |
17459487 |
gttctccaacttttcccgcgatgtcggatgcaattgctctgctctctcggaatgcac |
17459431 |
T |
|
Back To:
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Target: scaffold0021 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 488 - 546
Target Start/End: Original strand, 140467 - 140525
Alignment:
| Q |
488 |
gaagtaatcggaaccggaacccaagtccaagtacttccattggccgaagtggaagcccc |
546 |
Q |
| |
|
|||||||| |||||||| | |||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
140467 |
gaagtaataggaaccgggaaccaagtccaagtacctccattggccgaagttgaagcccc |
140525 |
T |
|
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