View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4866_high_2 (Length: 624)

Name: NF4866_high_2
Description: NF4866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4866_high_2
NF4866_high_2
[»] scaffold0790 (2 HSPs)
scaffold0790 (385-589)||(998-1204)
scaffold0790 (34-250)||(620-826)
[»] chr5 (1 HSPs)
chr5 (14-87)||(24428597-24428670)
[»] chr1 (1 HSPs)
chr1 (59-90)||(36938052-36938083)
[»] chr6 (1 HSPs)
chr6 (58-90)||(29017958-29017990)
[»] chr4 (1 HSPs)
chr4 (59-87)||(46899888-46899916)
[»] chr3 (1 HSPs)
chr3 (59-95)||(44589419-44589455)


Alignment Details
Target: scaffold0790 (Bit Score: 132; Significance: 3e-68; HSPs: 2)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 385 - 589
Target Start/End: Original strand, 998 - 1204
Alignment:
Q  385 tctttgttcccctgaagcctaattaaataaaaaggaagaaaagaaggtaaattttgttgtgatgatggaaagcacattgtgattcataggtttatcgaaa 484  Q
    |||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||  ||||||| ||| ||||||||||||||||||||||||    
T  998 tctttgttcccctgaaccataattaaataaaaaggaagaaaataaggtaaattttgttgtgagaatggaaaccacgttgtgattcataggtttatcgaaa 1097  T
Q  485 ctttaagttaaacctccgaatcattctgaattttcgtagatattgatctgttaca--ttctcccctctccagattggcatgttattttctgtatacatgc 582  Q
    |||| ||||||||||||| |||||||||||||||| |||||||||||||||||||  |||| |  ||||||||||| ||||| ||||||||||||||||     
T  1098 ctttcagttaaacctccgtatcattctgaattttcctagatattgatctgttacacgttcttcattctccagattgacatgtcattttctgtatacatgt 1197  T
Q  583 gtttcat 589  Q
    |||||||    
T  1198 gtttcat 1204  T

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Target: scaffold0790; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 34 - 250
Target Start/End: Original strand, 620 - 826
Alignment:
Q  34 atttttacgattttggggattttttagtgttgtcaattgtggatcacagaaaatagcttattttt-acgttaagctgctatttgataacacttagtacaa 132  Q
    |||||||||| ||| |||||||||||||||||||||| || ||||||||||||||| | ||| || |  ||| ||||   ||||||||||||| ||||      
T  620 atttttacgaattttgggattttttagtgttgtcaatcgtcgatcacagaaaatagttgattgttcaaattatgctg---tttgataacactttgtactg 716  T
Q  133 attagcgtgttgccgaataatgtcaatttgttcaaattccgccacgctatagttatgctataaccagtattttataacatcggagcacatttaagttcgc 232  Q
    |||||||| ||        |||| |||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||  |||| ||||||||||| |     
T  717 attagcgtatt--------atgttaatttgttcaaattgcgccacgctatagttttgctatagccagtattttataacactggagtacatttaagtttgt 808  T
Q  233 tgaaagcttttcaaatta 250  Q
    ||||||||||||||||||    
T  809 tgaaagcttttcaaatta 826  T

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Target: chr5 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 24428597 - 24428670
Alignment:
Q  14 actatgccatagggagattgatttttacgattttggggattttttagtgttgtcaattgtggatcacagaaaat 87  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24428597 actatgctatagggagattgatttttacgattttggggaatttttagtgttgtcaattgtggatcacagaaaat 24428670  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 90
Target Start/End: Complemental strand, 36938083 - 36938052
Alignment:
Q  59 agtgttgtcaattgtggatcacagaaaatagc 90  Q
    ||||||||||||||||||||||||||||||||    
T  36938083 agtgttgtcaattgtggatcacagaaaatagc 36938052  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 29017958 - 29017990
Alignment:
Q  58 tagtgttgtcaattgtggatcacagaaaatagc 90  Q
    ||||||||||||||||||||| |||||||||||    
T  29017958 tagtgttgtcaattgtggatcgcagaaaatagc 29017990  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 59 - 87
Target Start/End: Original strand, 46899888 - 46899916
Alignment:
Q  59 agtgttgtcaattgtggatcacagaaaat 87  Q
    |||||||||||||||||||||||||||||    
T  46899888 agtgttgtcaattgtggatcacagaaaat 46899916  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 44589419 - 44589455
Alignment:
Q  59 agtgttgtcaattgtggatcacagaaaatagcttatt 95  Q
    |||||||||||||||||||||  ||||||||||||||    
T  44589419 agtgttgtcaattgtggatcatggaaaatagcttatt 44589455  T

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