View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4866_high_3 (Length: 564)
Name: NF4866_high_3
Description: NF4866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4866_high_3 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 5 - 441
Target Start/End: Original strand, 7413400 - 7413836
Alignment:
| Q |
5 |
acatcatcatcttctaactctttgttgtccttttgtgttattcaacgcagttagtaatccttttagttgcctaatctctcattccaacttttgtttcata |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7413400 |
acatcatcatcttctaactctttgttgtccctttgtgttattcaacgcagttagtaatccttttagttgcctaatctcccattccaacttttgtttcata |
7413499 |
T |
|
| Q |
105 |
tcagttgtcttacaagcttaataaattcaacatggagctgttctttttctctctgtataaattgatattcaaatgacataaatattatgctatcttaacc |
204 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7413500 |
tcagttgtcttacaagcttaatgaattcaacatggagctgttctttttctctctgtataaattgatattcaaatgacataaatactatgctatcttaacc |
7413599 |
T |
|
| Q |
205 |
taacaaacatgattttgatcagtaaagaaagggaatatagaccttatgattttcaactatatttttgaattcttcatctgcatttaggttatccagggca |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7413600 |
taacaaacatgattttgatcagtaaagaaagggaatatagaccttatgattttcaactatatttttgaattcttcatctgcatttaggttatccagggca |
7413699 |
T |
|
| Q |
305 |
gcgatttgaagatatatatttttcattgcattttacatggacaataagtaacatcagagttaaacacaaccttctacaatctactcaagcaaattattat |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7413700 |
gcgatttgaagatatatatttttcattgcattttacatggacaataagtaacatcagagttaaacacaaccttctacaatctactcaagcaaattattat |
7413799 |
T |
|
| Q |
405 |
tttaaatgatctcaaagacacagaattatttcaaaat |
441 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
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|
| T |
7413800 |
tttaaatgatctcaaagacacaatattatttcaaaat |
7413836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 8 - 441
Target Start/End: Complemental strand, 7413291 - 7412857
Alignment:
| Q |
8 |
tcatcatcttctaactctttgttgtccttttgtgttattcaacgcagttagtaatccttttagttgcctaatctctcattccaacttttgtttcatatc- |
106 |
Q |
| |
|
|||||||||||||| ||||| |||||| || ||||||||||||||||||||| ||||||||||||||| |||| ||||||| ||||||||||||||||| |
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|
| T |
7413291 |
tcatcatcttctaaatctttcttgtccctt-gtgttattcaacgcagttagtgatccttttagttgcccaatcactcattcaaacttttgtttcatatcc |
7413193 |
T |
|
| Q |
107 |
agttgtcttacaagcttaataaattcaacatggagctgttcttttt---ctctctgtataaattgatattcaaatgacataaatattatgcta-tcttaa |
202 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||||| |||| |||||||||||||||||||||| |||||||| ||||||| | |||| |
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|
| T |
7413192 |
agttgtcttacaagcttaacgaattcaacatggagctattcttttttctctctttgtataaattgatattcaaatggcataaatactatgctaattttaa |
7413093 |
T |
|
| Q |
203 |
cctaacaaacatgattttgatcagtaaagaaagggaatatagaccttatgattttcaactatatttt--tgaattcttcatctgcatttaggttatccag |
300 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||| |
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|
| T |
7413092 |
cctaacaaacataattttgatcag-----aaagggaatatagaccttatgattttcaactatatattcttgaattcttcatcagcatttaggttatccag |
7412998 |
T |
|
| Q |
301 |
ggcagcgatttgaagatatatatttttcattgcattttacatggacaataagtaacatcagagttaaacacaaccttctacaatctactcaagcaaatta |
400 |
Q |
| |
|
||| |||| |||||| ||| ||||||||||||||||| |||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7412997 |
agcaacgatctgaagagatacatttttcattgcattttgcatggacagtaagaaaattcagagttaaacacaaccttctacaatctactcaagcaaatta |
7412898 |
T |
|
| Q |
401 |
ttattttaaatgatctcaaagacacagaattatttcaaaat |
441 |
Q |
| |
|
||||||||||| || | |||||||| ||||||||||||| |
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|
| T |
7412897 |
ttattttaaattattttaaagacacgatattatttcaaaat |
7412857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 42 - 361
Target Start/End: Complemental strand, 30495734 - 30495400
Alignment:
| Q |
42 |
ttattcaacgcagttagtaatccttttagttgcctaatctctcattccaacttttgtttcatat-cagttgtcttacaagcttaataaattcaacatgga |
140 |
Q |
| |
|
||||||||| || ||||| ||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||| | |
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|
| T |
30495734 |
ttattcaacacaattagtgatccttttagttgcccaatctcccattccaacttttgtttcatatccagttgtcttacaagcttaacgaattcaacatgaa |
30495635 |
T |
|
| Q |
141 |
gctgttc-tttttctctctg--tataaattgatattcaaatgacataaatattatgctatc-ttaacctaacaaacatgattttgatcagt--------- |
227 |
Q |
| |
|
| ||||| |||||||| ||| |||||||||||||| ||||||||||||| ||||||| | || |||||||||||| |||||||||||| |
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| T |
30495634 |
gttgttcttttttctccctgtatataaattgatatttgaatgacataaatactatgctaacgttgacctaacaaacacaattttgatcagtaacaaaaca |
30495535 |
T |
|
| Q |
228 |
-aaagaaagggaatatagaccttatgattttcaactatatttttgaattcttcatctgcatttaggttatccagggcagcgatttgaagatatatatttt |
326 |
Q |
| |
|
|| |||||||| |||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||| |||||||| ||||| |||| |||| |
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|
| T |
30495534 |
aaaggaaagggattatagaccttatgactttcaaccatatttgcgaattcttcatctgcatttaggttatccagagcagcgatccgaagagatatgtttt |
30495435 |
T |
|
| Q |
327 |
tcattgcattttacatggacaataagtaacatcag |
361 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
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|
| T |
30495434 |
ccattgcattttgcatggacaataagtaacatcag |
30495400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 446 - 564
Target Start/End: Original strand, 7414156 - 7414274
Alignment:
| Q |
446 |
aaggtagttttaagaatcaaaatatagaagtcattggtgttaactttgtgaagttctgcttgtacttttgttctgtttgtatatttcatttgtttgttta |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7414156 |
aaggtagttttaagaatcaaaatatagaagtcattggtgttaactttgtgaagttctgcttgtacttttgttctgtttgtatatttcatttgtttgttta |
7414255 |
T |
|
| Q |
546 |
tttattgtctgttaaaaca |
564 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
7414256 |
tttattgtctgttaaaaca |
7414274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 446 - 564
Target Start/End: Complemental strand, 7340752 - 7340634
Alignment:
| Q |
446 |
aaggtagttttaagaatcaaaatatagaagtcattggtgttaactttgtgaagttctgcttgtacttttgttctgtttgtatatttcatttgtttgttta |
545 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7340752 |
aaggtagttttaagaatcaaaatatagaagtcattggtgttaactttgtgaagttctgcttctacttttgttctgtttgtatatttcatttgtttgttta |
7340653 |
T |
|
| Q |
546 |
tttattgtctgttaaaaca |
564 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
7340652 |
tttattgtctgttaaaaca |
7340634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 446 - 564
Target Start/End: Complemental strand, 7414067 - 7413950
Alignment:
| Q |
446 |
aaggtagttttaagaatcaaaatatagaagtcattggtgttaactttgtgaagttctgcttgtacttttgttctgtttgtatatttcatttgtttgttta |
545 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
7414067 |
aaggttgttttaagaatcaaaatat-gaagtcattggtgttaactttgtgaagttttgcttgtacttttgttctgtttgtatatttcatttgcttgttta |
7413969 |
T |
|
| Q |
546 |
tttattgtctgttaaaaca |
564 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
7413968 |
tttattgtctgttaaaaca |
7413950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 45 - 176
Target Start/End: Complemental strand, 30447068 - 30446936
Alignment:
| Q |
45 |
ttcaacgcagttagtaatccttttagttgcctaatctctcattccaacttttgtttcatatc-agttgtcttacaagcttaataaattcaacatggagct |
143 |
Q |
| |
|
|||||| || ||||| |||||||||||||| |||||| ||||| ||||||||||||||| ||||||||| |||||| ||| | || | ||||||||| |
|
|
| T |
30447068 |
ttcaacacacttagtgatccttttagttgctgaatctccagttccagcttttgtttcatatccagttgtctttcaagctgaatgattttagcatggagct |
30446969 |
T |
|
| Q |
144 |
gttctttttctctctgtataaattgatattcaa |
176 |
Q |
| |
|
||||||||| | ||||||||||| || |||||| |
|
|
| T |
30446968 |
gttctttttgtttctgtataaatagaaattcaa |
30446936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 321 - 425
Target Start/End: Complemental strand, 30446780 - 30446676
Alignment:
| Q |
321 |
tatttttcattgcattttacatggacaataagtaacatcagagttaaacacaaccttctacaatctactcaagcaaattattattttaaatgatctcaaa |
420 |
Q |
| |
|
||||| || ||||||| | ||| |||||||| | || |||||||||||| | |||||| ||| || || |||||||||| |||||||||| ||| || | |
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|
| T |
30446780 |
tatttctcgttgcattctgcatagacaataaatgccagcagagttaaacaaagccttctgcaagcttctgaagcaaattactattttaaataatcccaga |
30446681 |
T |
|
| Q |
421 |
gacac |
425 |
Q |
| |
|
||||| |
|
|
| T |
30446680 |
gacac |
30446676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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