View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4866_low_1 (Length: 479)
Name: NF4866_low_1
Description: NF4866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4866_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 469
Target Start/End: Original strand, 48445465 - 48445917
Alignment:
| Q |
18 |
ctatcaatttacctcctcgcattcttagttgtaagactcttcagattcttacgttgggaaacttacttattaaaaaatttgataaagtggattttcctct |
117 |
Q |
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| T |
48445465 |
ctatcaatttacctcctcgcattcttagttgtaagactcttcagattcttacgttgggaaacttacttattaaaaaatttgataaagtggattttcctct |
48445564 |
T |
|
| Q |
118 |
tgtcaaaactcttcatttggatagagnnnnnnncacacctcctcaatgttttgtgaagtttatatatggttttcctattctcgaagatttgaatacaaaa |
217 |
Q |
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| T |
48445565 |
tgtcaaaactcttcatttggatagagtttttttcacacctcctcaatgttttgtgaagtttatatacggttttcctattctagaagatttgaatacaaaa |
48445664 |
T |
|
| Q |
218 |
tcatttctattaagttcgccggagttgtttgatgatccaacagtaaagttgaatgctttacttaatttggccaaagtaaggatttgttatggtatggatg |
317 |
Q |
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| T |
48445665 |
tcatttctattaagttcgccggagttgtttgatgatccagcagtaaagttgaatgctttacttaatttggccaaagtaaggatttgttatggtatggatg |
48445764 |
T |
|
| Q |
318 |
atatgatgactttgttttgcaaggcaaagattttgcatctagaacaggtatgaatatctctcctgtcaaattatttttgccagtttcatattatta-nnn |
416 |
Q |
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| T |
48445765 |
atatgatgactttgttttgcaaggcaaagattttgcatctagaacaggtatgaatatctctcctgtcaaattatttttgccagtttcatattattatttt |
48445864 |
T |
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| Q |
417 |
nnnnnnnnnncaaaacaatgtgttttagaaatttaagatataattgacctttg |
469 |
Q |
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| T |
48445865 |
ttttctttttcaaaacaatgtgttttagaaatttaagatataattgacctttg |
48445917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 266 - 373
Target Start/End: Complemental strand, 7175678 - 7175571
Alignment:
| Q |
266 |
ttgaatgctttacttaatttggccaaagtaaggatttgttatggtatggatgatatgatgactttgttttgcaaggcaaagattttgcatctagaacagg |
365 |
Q |
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||||||||||||| |||||||| |||||||| ||||| ||| ||||||| | ||||||||||| |||| |||||||||||| ||||| ||||| ||| |
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| T |
7175678 |
ttgaatgctttacctaatttggtgaaagtaagtatttgccatgatatggatactttgatgactttggtttgtaaggcaaagattatgcatgtagaaaagg |
7175579 |
T |
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| Q |
366 |
tatgaata |
373 |
Q |
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|||||||| |
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| T |
7175578 |
tatgaata |
7175571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 43098760 - 43098801
Alignment:
| Q |
266 |
ttgaatgctttacttaatttggccaaagtaaggatttgttat |
307 |
Q |
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| T |
43098760 |
ttgaatgctttacctaatttggtcaaagtaaggattcgttat |
43098801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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