View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4867-Insertion-11 (Length: 346)
Name: NF4867-Insertion-11
Description: NF4867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4867-Insertion-11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 7 - 345
Target Start/End: Complemental strand, 31966495 - 31966157
Alignment:
| Q |
7 |
atgaatcatgcaactatttttacaacgtaatgtcattcgaccataggaatacatgtgaaacctaccaaataatgaa-caaggtttccaaagaaaaaattg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31966495 |
atgaatcatgcaactatttttacaacgtaatgtcattcaaccataggaatacatgtgaaacctaccaaataatgaaacaaggtttccaaagaaaaaattg |
31966396 |
T |
|
| Q |
106 |
tcgacatcctctaaagtctatatggatgatatgatgataaaatccaaaaaagaggtagattataccatcatcagaagtaagtctttgaacaagcttaaaa |
205 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31966395 |
acgacatcctctaa-gtctatatggatgatatgatgataaaatccaaacaagaggtagattataccatcatcagaagtaagtctttgaacaagcttaaaa |
31966297 |
T |
|
| Q |
206 |
gtacaacatgagacttaacccatataaatataagtgcacatttgatgtacgagaaggtaagttcctagggttctacttgatgaaacaaggaatggaggca |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31966296 |
gtacaacatgagacttaacccatataaatataagtgcacatttgatgtacgagaaggtaagttcctagggttctacttgatgaaacaaggaatggaggca |
31966197 |
T |
|
| Q |
306 |
acccaagataaatttacagctttcaccaaaacacaattac |
345 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31966196 |
acccaagataaattcacagctttcaccaaaacacaattac |
31966157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University