View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4867-Insertion-3 (Length: 945)
Name: NF4867-Insertion-3
Description: NF4867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4867-Insertion-3 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 561; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 238 - 912
Target Start/End: Complemental strand, 36084136 - 36083461
Alignment:
| Q |
238 |
atattcttaaatgataagagaagtttattaataaatctatgaaaaaatatatctcatttgaattgtgtatcttgttctcattcctaaataagagttcttt |
337 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36084136 |
atattcttaaatgataagaaaagtttattaataaatctatgaaaaaatatatctcatttgaattgtgtatcttgttctcattcctaa-taagagttcttt |
36084038 |
T |
|
| Q |
338 |
ttcactannnnnnnncataggaagtgacacttacgccaatcatcacattttaaaattttatttgtatgaatcttctttaagatgattgagaagcttttgc |
437 |
Q |
| |
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|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36084037 |
ttcattattttttt-cataggaagtgacacttacgccaatcatcacattttaaaattttatttgtatgaatcttctttaagatgattgagaagcttttgc |
36083939 |
T |
|
| Q |
438 |
ctcaaacaatagaaaaatgtttgagaagccatgcgccctataagnnnnnnnnattactacttactttggaagttcaagttcacaaagggcaaaaagaaga |
537 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36083938 |
ctcaaacaatagaaaaatgtttgagaagccatgcgccctataagttctttt-attactacttactttggaagttcaagttcacaaagggcaaaaagaaga |
36083840 |
T |
|
| Q |
538 |
tgtttgagaagccatgcaccctatagttttttattactgcttactttggaagttcaagttcacaaagggcaaaaagaagaatttcttcacttaaccacac |
637 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36083839 |
tgtttgagaagccatgcaccctatagttttttattactgcttactttggaagttcaagttcacaaagggcaaaaagaagaatttcttcacttaaccacac |
36083740 |
T |
|
| Q |
638 |
cacaaaatcataccatcgaaaatcaagttcacaacaaagagcaagaagaagcacctctccttttaactaaaccacaaccgcacaccattgaagttgaagt |
737 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36083739 |
cacaaaatcataccatcgaaaatcaagttcacaacaaagagcaagaagaagcacctctccttttaactaaaccacgaccgcacaccattgaagttgaagt |
36083640 |
T |
|
| Q |
738 |
tcacaacaaagaccaagaagaagaacttctcctctt-atcacaccacaaccggacaccatggaggttcaagcacacaaagaggaagaacaagcacttctc |
836 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
36083639 |
tcacaacaaagaccaagaagaagaacttctcctcttaatcacaccacaaccggacaccatggaagttcaagcacacaaagaggaagaacaagcacttctc |
36083540 |
T |
|
| Q |
837 |
ctccaaacatgtgcactcaaaataaatgac-aagaagaag-acactctccgaaacaaggac-aggagaagtacacatga |
912 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| || |||||||||||||| |
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| T |
36083539 |
ctccaaacatgtgcactcaaaataaatgacaaagaagaagaacactctccgaaacaaggacaagaagaagtacacatga |
36083461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-127
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 36085882 - 36085651
Alignment:
| Q |
8 |
atatgtagaatgttaacttggacatcatttcgaatctaattatatgaatcttttaggatgaaggtttggatgtgattgtagaaggattggatactttgaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36085882 |
atatgtagaatgttaacttggacatcatttcgaatctaattatatgaatcttttaggatgaaggtttggatgtgattgtagaaggattggatactttgaa |
36085783 |
T |
|
| Q |
108 |
aaacatggcacacgatatgaatgaggtcagattccctattgtgtttgtctttcatcctttgcgtgtgtgatatacttatttgaatgtttaagtttgctaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36085782 |
aaacatggcacacgatatgaatgaggtcagattccctattgtgtttgtctttcatcctttgcgtgtgtgatatacttatttgaatgtttaagtttgctaa |
36085683 |
T |
|
| Q |
208 |
atacaggaatttgataggcaagttttactgat |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
36085682 |
atacaggaatttgataggcaagttttactgat |
36085651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 584 - 771
Target Start/End: Complemental strand, 36149987 - 36149803
Alignment:
| Q |
584 |
tggaagttcaagttcacaaagggcaaaaagaagaatttcttcacttaaccacaccacaaaatcataccatcgaaaatcaagttcacaacaaagagcaaga |
683 |
Q |
| |
|
||||| |||||| ||||||| ||| |||||||| |||||||||||||||||||||||||||||||| | ||| | |||||||||||||||||||||| |
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|
| T |
36149987 |
tggaaattcaagcccacaaagatcaagaagaagaacttcttcacttaaccacaccacaaaatcatacccttgaagctgaagttcacaacaaagagcaaga |
36149888 |
T |
|
| Q |
684 |
agaagcacctctccttttaactaaaccacaaccgcacaccattgaagttgaagttcacaacaaagaccaagaagaagaacttctcctc |
771 |
Q |
| |
|
| |||||||||| |||||||||| |||||| |||||||||||||||||| ||| ||| ||||||| ||||||||| |||||||||| |
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|
| T |
36149887 |
aaaagcacctctacttttaactataccacatccgcacaccattgaagttcaag--cac-gcaaagacgaagaagaagcacttctcctc |
36149803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 671 - 877
Target Start/End: Complemental strand, 36149972 - 36149764
Alignment:
| Q |
671 |
acaaagagcaagaagaagcacctctccttttaactaaaccacaaccgcacaccattgaagttgaagttcacaacaaagaccaagaagaagaacttctcct |
770 |
Q |
| |
|
||||||| |||||||||| || ||| | ||||| | ||||||| || ||| |||||| |||||||||||||||||| |||||| ||| || ||| || |
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|
| T |
36149972 |
acaaagatcaagaagaagaacttcttcacttaaccacaccacaaaatcatacccttgaagctgaagttcacaacaaagagcaagaaaaagcacctctact |
36149873 |
T |
|
| Q |
771 |
cttatc-acaccacaaccggacaccatggaggttcaagcacacaaagaggaagaacaagcacttctcctccaaacatgtgcactcaaaataaatga-caa |
868 |
Q |
| |
|
||| | | |||||| ||| ||||||| || |||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||| |||| || |
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|
| T |
36149872 |
tttaactataccacatccgcacaccattgaagttcaagcacgcaaagacgaagaagaagcacttctcctccaaacatgtgcactcaaaatagatgagaaa |
36149773 |
T |
|
| Q |
869 |
gaagaagac |
877 |
Q |
| |
|
||||||||| |
|
|
| T |
36149772 |
gaagaagac |
36149764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 368 - 470
Target Start/End: Complemental strand, 36069733 - 36069633
Alignment:
| Q |
368 |
ttacgccaatcatcacattttaaaattttatttgtatgaatcttctttaagatgattgagaagcttttgcctcaaacaatagaaaaatgtttgagaagcc |
467 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| | |||||||||| ||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |
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|
| T |
36069733 |
ttacgccaatcatcacatttaaaagttttatgtatatgaatctt-tttaagatgtttgagaagtttttgcctcaaacaata-aaaaatgtttgagaagcc |
36069636 |
T |
|
| Q |
468 |
atg |
470 |
Q |
| |
|
||| |
|
|
| T |
36069635 |
atg |
36069633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 241 - 315
Target Start/End: Complemental strand, 36069851 - 36069776
Alignment:
| Q |
241 |
ttcttaaatgataagagaagttt-attaataaatctatgaaaaaatatatctcatttgaattgtgtatcttgttct |
315 |
Q |
| |
|
||||||| |||| |||||| ||| |||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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|
| T |
36069851 |
ttcttaactgatgagagaatttttattaataaatctatgataaaatatatctcattttaattgtgtatcttgttct |
36069776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 231
Target Start/End: Original strand, 40730126 - 40730349
Alignment:
| Q |
8 |
atatgtagaatgttaacttggacatcatttcgaatctaattatatgaatcttttaggatgaaggtttggatgtgattgtagaaggattggatactttgaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
40730126 |
atatgtagaatgttaacttggacatcatttcaaatctaattatatgaatcttttaggatgaaggtttggatgtgattgcagaaggattggatactttgaa |
40730225 |
T |
|
| Q |
108 |
aaacatggcacacgatatgaatgaggtcagattccctattgtgtttgtctttcatcctttgcgtgtgtgatatacttatttgaatgtttaagtttgctaa |
207 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
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|
| T |
40730226 |
aaacatggcacacgatatgaacgaggtcagattgcctattgtgtttgtctttcatcctttgcgtgtgtgatatatttatttgaatgtttaagtttgtcaa |
40730325 |
T |
|
| Q |
208 |
atacaggaatttgataggcaagtt |
231 |
Q |
| |
|
|| ||||||||||||||||||||| |
|
|
| T |
40730326 |
atgcaggaatttgataggcaagtt |
40730349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 61 - 137
Target Start/End: Complemental strand, 28511149 - 28511073
Alignment:
| Q |
61 |
taggatgaaggtttggatgtgattgtagaaggattggatactttgaaaaacatggcacacgatatgaatgaggtcag |
137 |
Q |
| |
|
|||||| ||||||||||| |||||| |||||||||||||||||||||| ||||||| || || |||||||||||||| |
|
|
| T |
28511149 |
taggatcaaggtttggatatgattgcagaaggattggatactttgaaagacatggcgcatgacatgaatgaggtcag |
28511073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 801 - 865
Target Start/End: Original strand, 26527333 - 26527403
Alignment:
| Q |
801 |
gttcaagcacacaaagagg------aagaacaagcacttctcctccaaacatgtgcactcaaaataaatga |
865 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
26527333 |
gttcaagcacacaaagaggtagaagaagaagaagcacttctcctccaaacatgtgcactcaaaatagatga |
26527403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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