View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4867-Insertion-4 (Length: 881)
Name: NF4867-Insertion-4
Description: NF4867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4867-Insertion-4 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 573; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 8 - 881
Target Start/End: Complemental strand, 514972 - 514089
Alignment:
| Q |
8 |
atggtaatattgttgatgaatcaatgaagattcaatggaaccctagaatgagagttaagatgaagactgataaatcttcaaggatcccatatcaagggac |
107 |
Q |
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| T |
514972 |
atggtaatgttgttgatgaatcaatgaagattcaatggaaccctagaatgagagttaagatgaagactgataaatcttcaaggatcccatatcaagggac |
514873 |
T |
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| Q |
108 |
aatcactactgtatctcgtacttctaatttatggcgcatgcttcaggtata-tttcaatttatttttta--atcttatgcataatattatccagctatga |
204 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||| |||| ||| |||| | ||||||||||||||||||||||||||||| |
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| T |
514872 |
aatctctattgtatctcgtacttctaatttatggcgcatgcttcaggtatagtttccttttcttttcttggatcttatgcataatattatccagctatga |
514773 |
T |
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| Q |
205 |
aacacaagcagatattaga-------tacgacatggacatgacactttgaaatcaataataaatttaagaaaatcatataatagaatcgtatgtgtctgt |
297 |
Q |
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|||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
514772 |
aacacaagcagacattagaatttagatacgacatagacatgacactttgaaatcaataataaatttaagaaaatcatataatagaatcgtatgtgtctgt |
514673 |
T |
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| Q |
298 |
gtcttgtcggtatcacgcatcgacgtgtgtcagacatcaggagacgtctaatttgatgtgcccgtgcttcatagtatatagtatttggttgaagttgata |
397 |
Q |
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||| | |||||||||| || ||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||| |||||||| ||||||||||||| |
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| T |
514672 |
gtcgtatcggtatcacacaccgacgtgtgtcagacatcaggagacgtttaatctgatgtgttcgtgcttcatagtatctagtatttagttgaagttgata |
514573 |
T |
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| Q |
398 |
aatgattcnnnnnnnnnngtataaaccgggtttgctccacacacaattggtgtaaaccgggtgtacaaactctccataagagtttttaaagttgttgcat |
497 |
Q |
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| T |
514572 |
aatgattctttttttttggtataaaccgggtttgctttacacacaattgatgtaaaccgggtgtgcaaactcttcataagagtttttaaagttgttgcat |
514473 |
T |
|
| Q |
498 |
gtccaatgctcaatgttatatatataattagatgacagttcatgaaatgttatacctttgcaagagtgaggtggtgtggcaaaacactagattttgattg |
597 |
Q |
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| T |
514472 |
gtccaatgcttaatgctatatctataattagatgacagttcatgaaatgctatacctttgcaagagtgacatggtgtggcaaaacactagattttgattg |
514373 |
T |
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| Q |
598 |
atggcggtgtaaaactattacgccaatcgacattgcatttcatttaaattcaatttaaaattataagactt--aacattcacactagagctctcggtata |
695 |
Q |
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| T |
514372 |
atgacggtgtaaaacttttacaccaatcgatattgcatttcatttaaattcaatttaaaattataagacttaaaacattcacactagagctctcggtata |
514273 |
T |
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| Q |
696 |
tttgaatacttaattggatctcatagacatccatcactccttttttaatgttagtatctaataagcactcaacttctactacttaacatgtnnnnnnnnn |
795 |
Q |
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| T |
514272 |
tttgaatacttaattggatctcatagacatccatcactccttttttaatgttagtatctaataagcactcaacttctactacttaacatgtcaaaaaaaa |
514173 |
T |
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| Q |
796 |
nnnnnnnncctattaattaattttaataaaaatggatatttgaaatgtaggttgccttgctcctatattgttcctggccctatatg |
881 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| | |||||||||| |
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| T |
514172 |
aaaaaaaa-ctattaattaattttaataaaaaatgatatttgaaatgtaggttgccttgct-ctatattgtttcgtgccctatatg |
514089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 561349 - 561517
Alignment:
| Q |
8 |
atggtaatattgttgatgaatcaatgaagattcaatggaaccctagaatgagagttaagatgaagactgataaatcttcaaggatcccatatcaagggac |
107 |
Q |
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| T |
561349 |
atggtaatattgttgatgaatcaatgaagattcaatggaaccctagaatgagagttaagatgaagactgataaatcttcaaggatcccatatcaagggac |
561448 |
T |
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| Q |
108 |
aatcactactgtatctcgtacttctaatttatggcgcatgcttcaggtatatttcaatttattttttaa |
176 |
Q |
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| T |
561449 |
aatcactactgtatctcgtacttctaatttatggcgcatgcttcaggtataatttcattttttttttaa |
561517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 653 - 779
Target Start/End: Original strand, 562976 - 563107
Alignment:
| Q |
653 |
taaaattataagactta--acattcacactagagctctcggtatatttgaatact---taattggatctcatagacatccatcactccttttttaatgtt |
747 |
Q |
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| T |
562976 |
taaaattataagacttacaacattcacagtagagttctctgtatatttaaatactacttaattggatctcatagacatccatcactctttttttaatgtt |
563075 |
T |
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| Q |
748 |
agtatctaataagcactcaacttctactactt |
779 |
Q |
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| T |
563076 |
agtatctaataagcactcaatttctactactt |
563107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 307 - 547
Target Start/End: Original strand, 561886 - 562130
Alignment:
| Q |
307 |
gtatcacgcatcgacgtgtgtcagacatcaggagacgtctaatttgatgtgcccgtgcttcatagtatatagtatttggttgaagttgataaatgattcn |
406 |
Q |
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| T |
561886 |
gtatcacacaccgacgtgtgtccgatatcggaagacgtcttatctgatatgtccgtgcttcatagtatctagtatttagttgaagtttataaatgatt-- |
561983 |
T |
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| Q |
407 |
nnnnnnnnngtataaaccgggtttgctccacacacaattggtgtaaaccgggtgtacaaactctccataagagtttttaaagttgttgcatgtccaatgc |
506 |
Q |
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| T |
561984 |
atttttttggtgtaacctgggtttgctccacacaaaattggtgtaaatcgggtgtgcaaactcttcataagagtttttaatgttgttacatgtccaatgt |
562083 |
T |
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| Q |
507 |
tcaatgtta------tatatataattagatgacagttcatgaaatgt |
547 |
Q |
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| T |
562084 |
ccaatgctatatctttatctataattagatgacaattcatgaaatgt |
562130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 561706 - 561748
Alignment:
| Q |
169 |
ttttttaatcttatgcataatattatccagctatgaaacacaa |
211 |
Q |
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| T |
561706 |
ttttttaatcttatgcataatattatctagctatgaaacacaa |
561748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 550 - 611
Target Start/End: Original strand, 562919 - 562980
Alignment:
| Q |
550 |
tacctttgcaagagtgaggtggtgtggcaaaacactagattttgattgatggcggtgtaaaa |
611 |
Q |
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| T |
562919 |
tacctttgcaagagtgaggtgatatggcaaaacagtagattttaattgatgtgggtgtaaaa |
562980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 158
Target Start/End: Original strand, 565586 - 565625
Alignment:
| Q |
119 |
tatctcgtacttctaatttatggcgcatgcttcaggtata |
158 |
Q |
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| T |
565586 |
tatctcgtaattctaatttatggcgcatgcttcaggtata |
565625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 93
Target Start/End: Original strand, 6447043 - 6447082
Alignment:
| Q |
54 |
aatgagagttaagatgaagactgataaatcttcaaggatc |
93 |
Q |
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| T |
6447043 |
aatgagagttaagatgaaaactgataaatcatcaaggatc |
6447082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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