View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4867-Insertion-5 (Length: 722)

Name: NF4867-Insertion-5
Description: NF4867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4867-Insertion-5
NF4867-Insertion-5
[»] chr6 (10 HSPs)
chr6 (8-722)||(14403095-14403809)
chr6 (600-709)||(29751090-29751199)
chr6 (601-709)||(29744781-29744889)
chr6 (600-687)||(29465754-29465841)
chr6 (600-658)||(21611914-21611972)
chr6 (603-658)||(5659106-5659162)
chr6 (600-658)||(21282816-21282874)
chr6 (603-687)||(17971819-17971903)
chr6 (601-664)||(3618781-3618844)
chr6 (601-658)||(5660192-5660249)
[»] scaffold0898 (2 HSPs)
scaffold0898 (30-356)||(1092-1422)
scaffold0898 (432-538)||(1610-1716)
[»] scaffold0913 (2 HSPs)
scaffold0913 (40-356)||(4179-4499)
scaffold0913 (432-538)||(3885-3991)
[»] scaffold0029 (2 HSPs)
scaffold0029 (601-709)||(71779-71887)
scaffold0029 (600-709)||(70668-70778)
[»] chr7 (8 HSPs)
chr7 (601-709)||(45088202-45088310)
chr7 (603-709)||(45087067-45087173)
chr7 (600-658)||(21709157-21709215)
chr7 (601-687)||(40738193-40738279)
chr7 (600-664)||(23140247-23140311)
chr7 (602-658)||(26024888-26024944)
chr7 (600-658)||(21710602-21710660)
chr7 (600-709)||(45596868-45596978)
[»] chr3 (12 HSPs)
chr3 (600-709)||(27688485-27688594)
chr3 (600-709)||(27695525-27695634)
chr3 (600-691)||(20184447-20184538)
chr3 (600-709)||(20185763-20185872)
chr3 (600-664)||(39992489-39992553)
chr3 (603-709)||(39991507-39991612)
chr3 (602-658)||(21815909-21815965)
chr3 (602-658)||(21817401-21817457)
chr3 (601-664)||(40503727-40503790)
chr3 (601-664)||(48946681-48946744)
chr3 (639-709)||(5348847-5348916)
chr3 (601-691)||(40969255-40969345)
[»] scaffold0394 (1 HSPs)
scaffold0394 (600-709)||(14269-14379)
[»] chr8 (10 HSPs)
chr8 (600-693)||(9311020-9311113)
chr8 (604-709)||(9312126-9312231)
chr8 (601-693)||(14816570-14816661)
chr8 (601-693)||(14829079-14829170)
chr8 (600-658)||(39567062-39567120)
chr8 (602-658)||(45378549-45378605)
chr8 (603-658)||(44633775-44633830)
chr8 (600-658)||(39270795-39270853)
chr8 (600-634)||(14819395-14819429)
chr8 (600-664)||(41836492-41836557)
[»] chr1 (14 HSPs)
chr1 (604-709)||(33333362-33333467)
chr1 (601-693)||(46015823-46015915)
chr1 (600-709)||(33332176-33332285)
chr1 (600-709)||(46014700-46014809)
chr1 (600-687)||(6242669-6242756)
chr1 (616-709)||(2939740-2939833)
chr1 (601-658)||(51597961-51598018)
chr1 (600-658)||(16962009-16962067)
chr1 (601-658)||(51599434-51599491)
chr1 (600-664)||(46448736-46448800)
chr1 (602-658)||(50682588-50682644)
chr1 (602-664)||(6137234-6137296)
chr1 (600-665)||(6327940-6328005)
chr1 (672-709)||(39202922-39202959)
[»] chr2 (7 HSPs)
chr2 (600-691)||(35738362-35738453)
chr2 (600-708)||(7184880-7184989)
chr2 (600-662)||(36888337-36888399)
chr2 (600-693)||(13810546-13810637)
chr2 (600-658)||(36889748-36889806)
chr2 (601-664)||(31557091-31557154)
chr2 (601-664)||(34618517-34618580)
[»] chr4 (18 HSPs)
chr4 (601-709)||(11039682-11039788)
chr4 (600-709)||(51645922-51646030)
chr4 (601-693)||(11038577-11038669)
chr4 (600-664)||(36220595-36220659)
chr4 (600-658)||(756486-756544)
chr4 (601-658)||(702651-702708)
chr4 (601-658)||(770950-771007)
chr4 (601-658)||(35060454-35060511)
chr4 (600-658)||(16038274-16038332)
chr4 (600-658)||(35055332-35055390)
chr4 (602-664)||(36219408-36219470)
chr4 (601-658)||(701633-701690)
chr4 (601-658)||(769932-769989)
chr4 (600-658)||(757500-757558)
chr4 (600-664)||(43291956-43292020)
chr4 (603-658)||(16039679-16039734)
chr4 (605-687)||(50551386-50551468)
chr4 (600-664)||(11649503-11649568)
[»] chr5 (3 HSPs)
chr5 (600-709)||(19718840-19718949)
chr5 (600-687)||(37966813-37966900)
chr5 (600-664)||(30112705-30112769)
[»] scaffold0031 (3 HSPs)
scaffold0031 (600-658)||(123423-123481)
scaffold0031 (600-658)||(129420-129478)
scaffold0031 (600-658)||(134299-134357)
[»] scaffold0194 (2 HSPs)
scaffold0194 (600-664)||(19240-19304)
scaffold0194 (603-664)||(18070-18131)
[»] scaffold0009 (1 HSPs)
scaffold0009 (600-664)||(242156-242220)


Alignment Details
Target: chr6 (Bit Score: 610; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 8 - 722
Target Start/End: Original strand, 14403095 - 14403809
Alignment:
Q  8 aggacaacttagaacatggatacaataagagaggcttcaacttcaaggacacttcaggttcatggaacagcaatgacatcttagaggccataactggcga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14403095 aggacaacttagaacatggatacaataagagaggcttcaacttcaaggacacttcaggttcatggaacagcaatgacatcttagaggccataactggcga 14403194  T
Q  108 gcaaagagtagaagatgatattcaccctgattttatgtgacttttataaaatcaggtattacataaaagtgtttgattctgtgtaagtgtacaaataatc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14403195 gcaaagagtagaagatgatattcaccctgattttatgtgacttttataaaatcaggtattacataaaagtgtttgattctgtataagtgtacaaataatc 14403294  T
Q  208 taacaactccacgcatgtttcttctgctctcatttaaatgaatttccaattgtagggttttggatatggtattatactcgtattcaagctaaatttgtat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14403295 taacaactccacgcatgtttcttctgctctcatttaaatgaatttccaattgtagggttttggatatggtattatactcgtattcaagctaaatttgtat 14403394  T
Q  308 tcaaactattcttggatgagtaacatttagtacatacattcttatccatcaaataactgatgaatcacttccaaatcatcatgatgctgatattgaagga 407  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  14403395 tcaaactattcttgcatgagtaacatttattacatacattcttatccatcaaataactgacgaatcacttccaaatcatcatgatgctaatattgaagga 14403494  T
Q  408 tattttcaacaaggagattgatttccattaccattgagtatgaaagggacaagaatcaatgagttctttaatataatatatttcaatattttgattgatc 507  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14403495 tattttcaacaaggagattgattcccattaccattgagtatgaaagggacaagaatcaatgagttctttaatataatatatttcaatattttgatcgatc 14403594  T
Q  508 gtgaagttactctctattaagaatttgggacagtaacatttatcgaatcacgtaaatcttgtgtacaaannnnnnnnnnnnnnnnnnnnnnnaggcttaa 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||                       ||||||||    
T  14403595 gtgaagttactctctattaagaatttgggacagtaacatttatcgaatcgcgtaaatcttgtgcacaaatttttctccttccttttctttttaggcttaa 14403694  T
Q  608 ttgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaacttttgcgccgttacatgtt 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14403695 ttgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaacttttgcgccgttacatgtt 14403794  T
Q  708 tttacttgggtataa 722  Q
    |||||||||||||||    
T  14403795 tttacttgggtataa 14403809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 600 - 709
Target Start/End: Complemental strand, 29751199 - 29751090
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaacttttgcgccgt 699  Q
    ||||||||||||||||||||||||||| ||||||  ||||||||  |||||||||||||||||||    |||| ||||||||||||||||||||  ||||    
T  29751199 aggcttaattgctattttagtcccttaactaattatttggtatcggtttggtcccataactaaaaaaaagtccgttttggtattttaacttttgttccgt 29751100  T
Q  700 tacatgtttt 709  Q
    ||||||||||    
T  29751099 tacatgtttt 29751090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 601 - 709
Target Start/End: Original strand, 29744781 - 29744889
Alignment:
Q  601 ggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaacttttgcgccgtt 700  Q
    |||||||||||||||||||||||||| ||||||  ||||||||  |||||||||||||||||||    |||| ||||||||||||||||||||  |||||    
T  29744781 ggcttaattgctattttagtcccttaactaattatttggtatcggtttggtcccataactaaaaaaaagtccgttttggtattttaacttttgttccgtt 29744880  T
Q  701 acatgtttt 709  Q
    |||||||||    
T  29744881 acatgtttt 29744889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 600 - 687
Target Start/End: Original strand, 29465754 - 29465841
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaa 687  Q
    |||||||||||||||||| |||||||| ||||||  || |||||||||||| ||| ||| ||||||||| ||| ||||||||||||||    
T  29465754 aggcttaattgctattttcgtcccttaactaattaattagtatcactttggccccttaattaaaatttgttccgttttggtattttaa 29465841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 600 - 658
Target Start/End: Original strand, 21611914 - 21611972
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataa 658  Q
    |||||||||||||||||| |||||||| ||||||| ||||||||  |||||||||||||    
T  21611914 aggcttaattgctattttcgtcccttaactaattttttggtatcgatttggtcccataa 21611972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 603 - 658
Target Start/End: Original strand, 5659106 - 5659162
Alignment:
Q  603 cttaattgctatttta-gtcccttacctaatttgttggtatcactttggtcccataa 658  Q
    |||||||||||||||  |||||||| ||||||| |||||||||||||||||||||||    
T  5659106 cttaattgctatttttcgtcccttaactaattttttggtatcactttggtcccataa 5659162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 600 - 658
Target Start/End: Original strand, 21282816 - 21282874
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataa 658  Q
    |||||||||||||||||| ||||||||  |||||| || ||||| ||||||||||||||    
T  21282816 aggcttaattgctattttcgtcccttaattaatttttttgtatcgctttggtcccataa 21282874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 603 - 687
Target Start/End: Complemental strand, 17971903 - 17971819
Alignment:
Q  603 cttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaa 687  Q
    |||||||| |||||| || ||||| ||| |||  | ||||| |||||||||| ||| | ||||||| ||||||||||||||||||    
T  17971903 cttaattgatattttcgttccttaactattttagtagtatcgctttggtcccttaattcaaatttgttccattttggtattttaa 17971819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 601 - 664
Target Start/End: Original strand, 3618781 - 3618844
Alignment:
Q  601 ggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaa 664  Q
    ||||||| |||| ||||||||||||| ||| ||  |||||||| |||||||||| |||||||||    
T  3618781 ggcttaaatgcttttttagtcccttaactatttaattggtatcgctttggtcccttaactaaaa 3618844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 601 - 658
Target Start/End: Complemental strand, 5660249 - 5660192
Alignment:
Q  601 ggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataa 658  Q
    ||||||||||||||||| |||||| | ||||||| ||||||||  ||||||| |||||    
T  5660249 ggcttaattgctattttcgtccctaaactaattttttggtatcgttttggtctcataa 5660192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0898 (Bit Score: 205; Significance: 1e-111; HSPs: 2)
Name: scaffold0898
Description:

Target: scaffold0898; HSP #1
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 30 - 356
Target Start/End: Original strand, 1092 - 1422
Alignment:
Q  30 caataagagaggcttcaacttcaaggacacttcaggttcatggaacagcaatgacatcttagaggccataactggcgagcaaagagtagaagatgatatt 129  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||     
T  1092 caataagagaggctttaacttcaaggacgcttcaggttcatggaacaacaacgacatcttagaggccataactggtgagcaaagagtagaagatgatatc 1191  T
Q  130 caccctgattttatgtgacttttataaaatcaggtattacataaaagtgtttgattctgtgtaagtgtacaaata--atctaacaactccacgcatgttt 227  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||  || ||||||||||||||| ||||    
T  1192 caccctgattttatgtgacttttataaaatcaggtgttacataaaagtgtttgattttgtgtaagtgtacaaataatatataacaactccacgcaagttt 1291  T
Q  228 cttctgctctcatttaaatgaatttccaattgtagggttttggatatggtattatactcgtattcaagctaaatttgtattcaaactattcttggatgag 327  Q
    ||||||  |||||||||||| ||||||||| ||| || |||||||  ||| ||||||| || ||||| ||| || ||||||||||||||||||| ||||     
T  1292 cttctggcctcatttaaatggatttccaatggtacggatttggattcggtgttatacttgtcttcaaactatatatgtattcaaactattcttgcatgaa 1391  T
Q  328 taaca--tttagtacatacattcttatccat 356  Q
    |||||  ||||||||||||||||||||||||    
T  1392 taacagttttagtacatacattcttatccat 1422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0898; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 432 - 538
Target Start/End: Original strand, 1610 - 1716
Alignment:
Q  432 ccattaccattgagtatgaaagggacaagaatcaatgagttctttaatataatatatttcaatattttgattgatcgtgaagttactctctattaagaat 531  Q
    ||||||||||| | ||||||||||||| |||||||||  ||||||| ||||||||||||| |||||||||| ||| |||||| | | |||||| ||||||    
T  1610 ccattaccattaattatgaaagggacatgaatcaatggattctttattataatatatttcgatattttgatcgatagtgaagctgcactctatcaagaat 1709  T
Q  532 ttgggac 538  Q
    | |||||    
T  1710 tcgggac 1716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0913 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: scaffold0913
Description:

Target: scaffold0913; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 40 - 356
Target Start/End: Complemental strand, 4499 - 4179
Alignment:
Q  40 ggcttcaacttcaaggacacttcaggttcatggaacagcaatgacatcttagaggccataactggcgagcaaagagtagaagatgatattcaccctgatt 139  Q
    ||||| |||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  4499 ggctttaacttcaaggacgcttcaggttcatggaacaacaacgacatcttagaggccataactggtgagcaaagagtagaagatgatatccaccctgatt 4400  T
Q  140 ttatgtgacttttataaaatcaggtattacataaaagtgtttgattctgtgtaagtgtacaaata--atctaacaactccacgcatgtttcttctgctct 237  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||  || ||||||||||||||| ||||||||||  ||    
T  4399 ttatgtgacttttataaaatcaggtgttacataaaagtgtttgattttgtgtaagtgtacaaataatatataacaactccacgcaagtttcttctggcct 4300  T
Q  238 catttaaatgaatttccaattgtagggttttggatatggtattatactcgtattcaagctaaatttgtattcaaactattcttggatgagtaaca--ttt 335  Q
    |||||||||| ||||||||| ||| || |||||||  ||| ||||||| || ||||| ||| |||||||||||||||||||||| |||| |||||  |||    
T  4299 catttaaatggatttccaatggtacggatttggattcggtgttatacttgtcttcaaactatatttgtattcaaactattcttgcatgaataacagtttt 4200  T
Q  336 agtacatacattcttatccat 356  Q
    |||||||||||||||||||||    
T  4199 agtacatacattcttatccat 4179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0913; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 432 - 538
Target Start/End: Complemental strand, 3991 - 3885
Alignment:
Q  432 ccattaccattgagtatgaaagggacaagaatcaatgagttctttaatataatatatttcaatattttgattgatcgtgaagttactctctattaagaat 531  Q
    ||||||||||| | ||||||||||||| |||||||||  ||||||| ||||||||||||| |||||||||| ||| |||||| | | |||||| ||||||    
T  3991 ccattaccattaattatgaaagggacatgaatcaatggattctttattataatatatttcgatattttgatcgatagtgaagctgcactctatcaagaat 3892  T
Q  532 ttgggac 538  Q
    | |||||    
T  3891 tcgggac 3885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 73; Significance: 6e-33; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 601 - 709
Target Start/End: Complemental strand, 71887 - 71779
Alignment:
Q  601 ggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaacttttgcgccgtt 700  Q
    |||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||   ||||| || |||||||||||||||||| |||||    
T  71887 ggcttaattgctattttagtcccttaactaattttttggtatcgctttggtcccataactaaaaaaaggtccgttgtggtattttaacttttgctccgtt 71788  T
Q  701 acatgtttt 709  Q
    |||||||||    
T  71787 acatgtttt 71779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 600 - 709
Target Start/End: Original strand, 70668 - 70778
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttg-gtccattttggtattttaacttttgcgccg 698  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||  |||||||||||||||||||     |||||||||||||||||||||||| | |||    
T  70668 aggcttaattgctattttagtcccttaactaattttttggtatcggtttggtcccataactaaaaaaaaagtccattttggtattttaacttttactccg 70767  T
Q  699 ttacatgtttt 709  Q
    |||||||||||    
T  70768 ttacatgtttt 70778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 601 - 709
Target Start/End: Complemental strand, 45088310 - 45088202
Alignment:
Q  601 ggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaacttttgcgccgtt 700  Q
    |||||||||||||||||||||||||| ||||||  ||||||||| |||||||||||||||||||   ||||| ||||||||||||||||||||| | |||    
T  45088310 ggcttaattgctattttagtcccttaactaattgtttggtatcagtttggtcccataactaaaaaaaggtccgttttggtattttaacttttgctcagtt 45088211  T
Q  701 acatgtttt 709  Q
    || ||||||    
T  45088210 acttgtttt 45088202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 603 - 709
Target Start/End: Original strand, 45087067 - 45087173
Alignment:
Q  603 cttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaacttttgcgccgttac 702  Q
    |||||||| ||||||||||| ||| ||||||| ||||||||  |||||||||||||||||||   ||||| ||||||||||||||||||||| |||||||    
T  45087067 cttaattgttattttagtcctttaactaattttttggtatcggtttggtcccataactaaaaaaaggtccgttttggtattttaacttttgctccgttac 45087166  T
Q  703 atgtttt 709  Q
    |||||||    
T  45087167 atgtttt 45087173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 600 - 658
Target Start/End: Original strand, 21709157 - 21709215
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataa 658  Q
    |||||||||||||||||| |||||||| ||||||| || ||||| ||||||||||||||    
T  21709157 aggcttaattgctattttcgtcccttaactaattttttagtatcgctttggtcccataa 21709215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 601 - 687
Target Start/End: Original strand, 40738193 - 40738279
Alignment:
Q  601 ggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaa 687  Q
    ||||||||||||||||| |||||| | ||||||  || ||||| |||||||||| ||| ||||||||| ||  ||||||||||||||    
T  40738193 ggcttaattgctattttcgtccctcaactaattaattagtatcgctttggtcccttaattaaaatttgttctgttttggtattttaa 40738279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 600 - 664
Target Start/End: Complemental strand, 23140311 - 23140247
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaa 664  Q
    |||||||| |||| |||| |||||||| ||| ||  ||||||||||||||||||| |||||||||    
T  23140311 aggcttaaatgctcttttggtcccttaactatttaattggtatcactttggtcccttaactaaaa 23140247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 602 - 658
Target Start/End: Original strand, 26024888 - 26024944
Alignment:
Q  602 gcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataa 658  Q
    ||||||||||||| || |||||||| || |||| |||||||| ||||||||||||||    
T  26024888 gcttaattgctatcttcgtcccttaacttattttttggtatcgctttggtcccataa 26024944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 600 - 658
Target Start/End: Complemental strand, 21710660 - 21710602
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataa 658  Q
    ||||| ||||| |||||| |||||||| || |||| |||||||| ||||||||||||||    
T  21710660 aggctgaattgatatttttgtcccttaacttattttttggtatcgctttggtcccataa 21710602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 600 - 709
Target Start/End: Original strand, 45596868 - 45596978
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaa-tttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaacttttgcgccg 698  Q
    ||||||||||||||||||| ||||||| |||| ||| ||||||||  |||| |  |||||||||||    |||| |||||||||||||| |||  | ||     
T  45596868 aggcttaattgctattttaatcccttaactaatttttttggtatcggtttgataacataactaaaaaaaagtccgttttggtattttaagtttatctcca 45596967  T
Q  699 ttacatgtttt 709  Q
    |||||||||||    
T  45596968 ttacatgtttt 45596978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 600 - 709
Target Start/End: Original strand, 27688485 - 27688594
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaacttttgcgccgt 699  Q
    ||||||||||||||||||||||||||| ||||||  ||||||||  |||||||||||||||||||    |||| ||||||||||||||||||||  ||||    
T  27688485 aggcttaattgctattttagtcccttaactaattatttggtatcggtttggtcccataactaaaaaaaagtccgttttggtattttaacttttgttccgt 27688584  T
Q  700 tacatgtttt 709  Q
    ||||||||||    
T  27688585 tacatgtttt 27688594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 600 - 709
Target Start/End: Complemental strand, 27695634 - 27695525
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaacttttgcgccgt 699  Q
    ||||||||||||||||||||||||||| ||||||  ||||||||  ||||||||||||||| |||    |||| ||||||||||||||||||||  ||||    
T  27695634 aggcttaattgctattttagtcccttaactaattatttggtatcggtttggtcccataactgaaaaaaagtccgttttggtattttaacttttgttccgt 27695535  T
Q  700 tacatgtttt 709  Q
    ||||||||||    
T  27695534 tacatgtttt 27695525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 600 - 691
Target Start/End: Original strand, 20184447 - 20184538
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaacttt 691  Q
    ||||||||||| ||||||||||||||| ||||||| ||||||||  ||||||||||||||||||| |   ||| ||||||||||||||||||    
T  20184447 aggcttaattgttattttagtcccttaactaattttttggtatcggtttggtcccataactaaaaataaatccgttttggtattttaacttt 20184538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 600 - 709
Target Start/End: Complemental strand, 20185872 - 20185763
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaacttttgcgccgt 699  Q
    ||||||||||||||||||||||| ||||||||||| || |||||  |||| ||||||||||||||    ||   ||||||||||||||||||||  ||||    
T  20185872 aggcttaattgctattttagtccattacctaatttttttgtatcggtttgatcccataactaaaaaaaagtttgttttggtattttaacttttgttccgt 20185773  T
Q  700 tacatgtttt 709  Q
    ||||||||||    
T  20185772 tacatgtttt 20185763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 600 - 664
Target Start/End: Complemental strand, 39992553 - 39992489
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaa 664  Q
    |||||||||| |||||||||||||||| ||||||| ||||||||||||| ||||||||| |||||    
T  39992553 aggcttaattactattttagtcccttaactaattttttggtatcacttttgtcccataattaaaa 39992489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 603 - 709
Target Start/End: Original strand, 39991507 - 39991612
Alignment:
Q  603 cttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaacttttgcgccgttac 702  Q
    |||||||| ||||||||| ||||| ||||||| ||| ||||  |||| ||||||||||||||     ||| ||||||||||||||||||||| || | ||    
T  39991507 cttaattgttattttagttccttaactaattttttgatatcgttttgatcccataactaaaa-aaaatccgttttggtattttaacttttgctccatcac 39991605  T
Q  703 atgtttt 709  Q
    |||||||    
T  39991606 atgtttt 39991612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 602 - 658
Target Start/End: Original strand, 21815909 - 21815965
Alignment:
Q  602 gcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataa 658  Q
    |||||||||||||||| |||||||| ||||||| || ||||| ||||||| ||||||    
T  21815909 gcttaattgctattttcgtcccttaactaattttttagtatcgctttggttccataa 21815965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 602 - 658
Target Start/End: Complemental strand, 21817457 - 21817401
Alignment:
Q  602 gcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataa 658  Q
    |||||||| |||||||  ||||||| ||||||| |||||||| ||||||||||||||    
T  21817457 gcttaattactattttcatcccttaactaattttttggtatcgctttggtcccataa 21817401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 601 - 664
Target Start/End: Complemental strand, 40503790 - 40503727
Alignment:
Q  601 ggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaa 664  Q
    |||||||||||| |||| |||||||| ||| ||  |||||||| |||||||||| |||||||||    
T  40503790 ggcttaattgctcttttggtcccttaactatttaattggtatcgctttggtcccttaactaaaa 40503727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 601 - 664
Target Start/End: Complemental strand, 48946744 - 48946681
Alignment:
Q  601 ggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaa 664  Q
    ||||||| |||| |||| |||||||| ||| ||  ||||||||||||||||||| |||||||||    
T  48946744 ggcttaaatgctcttttggtcccttaactatttaattggtatcactttggtcccttaactaaaa 48946681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 639 - 709
Target Start/End: Complemental strand, 5348916 - 5348847
Alignment:
Q  639 gtatcactttggtcccataactaaaatttggtccattttggtattttaacttttgcgccgttacatgtttt 709  Q
    ||||| |||||||||| ||| ||||||||| |  |||||||||||||||||||| | ||||||||| ||||    
T  5348916 gtatcgctttggtcccgtaattaaaatttgatttattttggtattttaactttt-ctccgttacatatttt 5348847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 601 - 691
Target Start/End: Original strand, 40969255 - 40969345
Alignment:
Q  601 ggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaacttt 691  Q
    |||| ||||||  ||||||||||||| ||| ||  || ||||| |||||||||| ||| ||||||||| |  |||||||||| ||||||||    
T  40969255 ggctaaattgcatttttagtcccttaactatttaattagtatcgctttggtcccttaattaaaatttgatttattttggtatcttaacttt 40969345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 600 - 709
Target Start/End: Original strand, 14269 - 14379
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaa-tttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaacttttgcgccg 698  Q
    ||||||||||||||||||||||||||| |||| ||| ||||||||  |||||||||||||||||||    |||| ||||||||||||||||||||  |||    
T  14269 aggcttaattgctattttagtcccttaactaatttttttggtatcggtttggtcccataactaaaaaaaagtccgttttggtattttaacttttgttccg 14368  T
Q  699 ttacatgtttt 709  Q
    |||||||||||    
T  14369 ttacatgtttt 14379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 5e-24; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 600 - 693
Target Start/End: Original strand, 9311020 - 9311113
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaacttttg 693  Q
    ||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||    |||  ||||||||||||||||||||    
T  9311020 aggcttaattgctattttagtcccttatctaattttttggtatcgctttggtcccataactaaaaaaaagtctgttttggtattttaacttttg 9311113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 604 - 709
Target Start/End: Complemental strand, 9312231 - 9312126
Alignment:
Q  604 ttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaacttttgcgccgttaca 703  Q
    ||||||||||||||||||| ||| ||||||| |||||||| ||||| ||||||||||||||    |||| |||||||||||||| |||||| | || |||    
T  9312231 ttaattgctattttagtcctttaactaattttttggtatcgctttgatcccataactaaaaaaaagtccgttttggtattttaatttttgctctgtcaca 9312132  T
Q  704 tgtttt 709  Q
    ||||||    
T  9312131 tgtttt 9312126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 601 - 693
Target Start/End: Original strand, 14816570 - 14816661
Alignment:
Q  601 ggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaacttttg 693  Q
    |||||||||||||||||||||||||| ||||||| |||||||| |||||||||||| |||||||    |||  ||||||||||||||||||||    
T  14816570 ggcttaattgctattttagtcccttaactaattttttggtatcgctttggtcccattactaaaa-aaagtctgttttggtattttaacttttg 14816661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 601 - 693
Target Start/End: Complemental strand, 14829170 - 14829079
Alignment:
Q  601 ggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaacttttg 693  Q
    |||||||||||||||||||||||||| ||||||| |||||||| |||||||||||| |||||||    |||  ||||||||||||||||||||    
T  14829170 ggcttaattgctattttagtcccttaactaattttttggtatcgctttggtcccattactaaaa-aaagtctgttttggtattttaacttttg 14829079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 600 - 658
Target Start/End: Original strand, 39567062 - 39567120
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataa 658  Q
    ||||||||||| |||||| |||||||| ||||||| |||||||| ||||||||||||||    
T  39567062 aggcttaattgttattttcgtcccttaactaattttttggtatcgctttggtcccataa 39567120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 602 - 658
Target Start/End: Complemental strand, 45378605 - 45378549
Alignment:
Q  602 gcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataa 658  Q
    |||||||||||||||| ||||||||  |||||| |||||||| ||||||||||||||    
T  45378605 gcttaattgctattttcgtcccttaaataattttttggtatcgctttggtcccataa 45378549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 603 - 658
Target Start/End: Complemental strand, 44633830 - 44633775
Alignment:
Q  603 cttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataa 658  Q
    ||||||||||||||| || ||||| ||||||| |||||||| ||||||||||||||    
T  44633830 cttaattgctattttggttccttaactaattttttggtatcgctttggtcccataa 44633775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 600 - 658
Target Start/End: Complemental strand, 39270853 - 39270795
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataa 658  Q
    |||||||||||||||||| |||||||| || |||| ||||||||  |||||||||||||    
T  39270853 aggcttaattgctattttcgtcccttaacttattttttggtatcgttttggtcccataa 39270795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 600 - 634
Target Start/End: Complemental strand, 14819429 - 14819395
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaattt 634  Q
    ||||||||||||||||||||||||||| |||||||    
T  14819429 aggcttaattgctattttagtcccttaactaattt 14819395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 600 - 664
Target Start/End: Original strand, 41836492 - 41836557
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaattt-gttggtatcactttggtcccataactaaaa 664  Q
    |||||||| |||| ||||||||||||| |||||||  |||||||| |||||| ||| |||||||||    
T  41836492 aggcttaaatgctcttttagtcccttaactaatttaattggtatcgctttggacccttaactaaaa 41836557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 5e-24; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 604 - 709
Target Start/End: Complemental strand, 33333467 - 33333362
Alignment:
Q  604 ttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaacttttgcgccgttaca 703  Q
    ||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||| |||||    |||| |||||||||||||| |||||| ||||||||    
T  33333467 ttaattgctattttagtcccttaactaattttttggtatcagtttggtcccataattaaaaaaatgtccgttttggtattttaatttttgctccgttaca 33333368  T
Q  704 tgtttt 709  Q
    | ||||    
T  33333367 tctttt 33333362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 601 - 693
Target Start/End: Complemental strand, 46015915 - 46015823
Alignment:
Q  601 ggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaacttttg 693  Q
    |||||||||| |||||||||||||||  |||||| |||||||| ||||||||||||||||||||    |||| ||||||||||||||||||||    
T  46015915 ggcttaattgttattttagtcccttaagtaattttttggtatcgctttggtcccataactaaaaaaaagtccgttttggtattttaacttttg 46015823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 600 - 709
Target Start/End: Original strand, 33332176 - 33332285
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaacttttgcgccgt 699  Q
    |||||||||||||||||||||| |||| ||| ||  ||||||||  |||||||||||||||||||    |||| ||||| ||||||||||||||| ||||    
T  33332176 aggcttaattgctattttagtctcttaactagttgtttggtatcggtttggtcccataactaaaaaaatgtccgttttgatattttaacttttgctccgt 33332275  T
Q  700 tacatgtttt 709  Q
    ||| ||||||    
T  33332276 tacttgtttt 33332285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 600 - 709
Target Start/End: Original strand, 46014700 - 46014809
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaacttttgcgccgt 699  Q
    ||||||||||||||||||||||  ||| ||||||| |||||||| ||| | ||||||||||||||    |||  ||||||||||||||||||||| | ||    
T  46014700 aggcttaattgctattttagtcatttaactaattttttggtatcgcttcgatcccataactaaaaaaaagtctgttttggtattttaacttttgctctgt 46014799  T
Q  700 tacatgtttt 709  Q
     |||||||||    
T  46014800 cacatgtttt 46014809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 600 - 687
Target Start/End: Complemental strand, 6242756 - 6242669
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaa 687  Q
    ||||||||||| ||||||  ||||||| ||||||  || ||||| |||||||||| ||| ||||||||| ||| ||||||||||||||    
T  6242756 aggcttaattgatattttcatcccttaactaattaattagtatcgctttggtcccttaattaaaatttgttccgttttggtattttaa 6242669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 616 - 709
Target Start/End: Complemental strand, 2939833 - 2939740
Alignment:
Q  616 ttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaacttttgcgccgttacatgtttt 709  Q
    ||||||||||| ||||| | ||||||||  |||||||| ||||||||||    |||  ||||||||||||||||||||| ||||||| ||||||    
T  2939833 ttagtcccttaactaatattttggtatcggtttggtcctataactaaaaaaatgtctgttttggtattttaacttttgctccgttacttgtttt 2939740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 601 - 658
Target Start/End: Original strand, 51597961 - 51598018
Alignment:
Q  601 ggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataa 658  Q
    ||||||||||||||||| |||||||| || |||| |||||||| ||||||||||||||    
T  51597961 ggcttaattgctattttcgtcccttaacttattttttggtatcgctttggtcccataa 51598018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 600 - 658
Target Start/End: Original strand, 16962009 - 16962067
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataa 658  Q
    |||||||||||||||||| |||||||| ||||||| |||||||  ||||||||| ||||    
T  16962009 aggcttaattgctatttttgtcccttaactaattttttggtattgctttggtcctataa 16962067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 601 - 658
Target Start/End: Complemental strand, 51599491 - 51599434
Alignment:
Q  601 ggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataa 658  Q
    ||||||||||||||||| |||||||| ||||||| |||||||| ||||| ||| ||||    
T  51599491 ggcttaattgctattttcgtcccttaactaattttttggtatcgctttgatcctataa 51599434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 600 - 664
Target Start/End: Complemental strand, 46448800 - 46448736
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaa 664  Q
    |||||||| |||| ||||||||||||| ||| ||  |||||||| |||||||||| |||||||||    
T  46448800 aggcttaaatgctcttttagtcccttaactatttaattggtatcgctttggtcccttaactaaaa 46448736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 602 - 658
Target Start/End: Complemental strand, 50682644 - 50682588
Alignment:
Q  602 gcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataa 658  Q
    |||||||||||||||| ||||||||  || ||| |||||||| ||||||||||||||    
T  50682644 gcttaattgctattttggtcccttaattatttttttggtatcgctttggtcccataa 50682588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 602 - 664
Target Start/End: Original strand, 6137234 - 6137296
Alignment:
Q  602 gcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaa 664  Q
    |||||| |||| |||| |||||||| ||| ||  ||||||||||||||||||| |||||||||    
T  6137234 gcttaaatgctcttttggtcccttaactatttaattggtatcactttggtcccttaactaaaa 6137296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 600 - 665
Target Start/End: Original strand, 6327940 - 6328005
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaat 665  Q
    ||||||||||||| |||  |||||||| ||| ||  |||||||| |||||||||| ||||||||||    
T  6327940 aggcttaattgctctttaggtcccttaactatttaattggtatcgctttggtcccttaactaaaat 6328005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 672 - 709
Target Start/End: Complemental strand, 39202959 - 39202922
Alignment:
Q  672 cattttggtattttaacttttgcgccgttacatgtttt 709  Q
    |||||||||||||||||||||||||  |||||||||||    
T  39202959 cattttggtattttaacttttgcgctattacatgtttt 39202922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 8e-23; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 600 - 691
Target Start/End: Original strand, 35738362 - 35738453
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaacttt 691  Q
    |||||||||| ||||||| || ||||| ||||||| |||||||| ||||||| ||||| |||||||||| ||||||||||||||||||||||    
T  35738362 aggcttaattactattttcgttccttaactaattttttggtatcgctttggttccatatctaaaatttgatccattttggtattttaacttt 35738453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 600 - 708
Target Start/End: Original strand, 7184880 - 7184989
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaattt-ggtccattttggtattttaacttttgcgccg 698  Q
    |||||||||||||||||||||| |||| ||||||| ||||||||  |||| ||||||||||||||    ||||| ||||||||||||||||||| | |||    
T  7184880 aggcttaattgctattttagtctcttaactaattttttggtatcggtttgatcccataactaaaaaaaaggtccgttttggtattttaacttttactccg 7184979  T
Q  699 ttacatgttt 708  Q
    |||| |||||    
T  7184980 ttacttgttt 7184989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 600 - 662
Target Start/End: Original strand, 36888337 - 36888399
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaa 662  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||  |||||||||||||||||    
T  36888337 aggcttaattgctattttagtcccttagctaattttttggtatcggtttggtcccataactaa 36888399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 600 - 693
Target Start/End: Complemental strand, 13810637 - 13810546
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaacttttg 693  Q
    |||||||||||| ||||||||| |||| |||||||  ||||||| ||||||||||||||||||||    ||||  |||||||||||||||||||    
T  13810637 aggcttaattgcaattttagtctcttaactaattt--tggtatcgctttggtcccataactaaaaaaaagtccgatttggtattttaacttttg 13810546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 600 - 658
Target Start/End: Complemental strand, 36889806 - 36889748
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataa 658  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||  |||||||||||||    
T  36889806 aggcttaattgctattttagtcccttaactaattttttggtatcggtttggtcccataa 36889748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 601 - 664
Target Start/End: Original strand, 31557091 - 31557154
Alignment:
Q  601 ggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaa 664  Q
    ||||||| |||| ||||||||||||| ||| ||  |||||||| |||||||||| |||||||||    
T  31557091 ggcttaaatgctcttttagtcccttaactatttaattggtatcgctttggtcccttaactaaaa 31557154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 601 - 664
Target Start/End: Complemental strand, 34618580 - 34618517
Alignment:
Q  601 ggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaa 664  Q
    ||||||| |||| ||||||||||||| ||| ||  |||||||| |||||||||| |||||||||    
T  34618580 ggcttaaatgctcttttagtcccttaactatttaattggtatcgctttggtcccttaactaaaa 34618517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 601 - 709
Target Start/End: Complemental strand, 11039788 - 11039682
Alignment:
Q  601 ggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaacttttgcgccgtt 700  Q
    |||||||||||||||||||||  ||| ||||||| |||||||||||||| ||  ||||||||||    |||||||||||||||||||||||||| ||||     
T  11039788 ggcttaattgctattttagtcatttaactaattttttggtatcactttgatc--ataactaaaaaaaagtccattttggtattttaacttttgctccgtc 11039691  T
Q  701 acatgtttt 709  Q
    |||||||||    
T  11039690 acatgtttt 11039682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 600 - 709
Target Start/End: Complemental strand, 51646030 - 51645922
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaacttttgcgccgt 699  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||  |||||||||||||||||||    |||| |||||||||||||| |||  | ||||    
T  51646030 aggcttaattgctattttagtcccttagctaattttttggtatcggtttggtcccataactaaaa-aaagtccgttttggtattttaagtttatctccgt 51645932  T
Q  700 tacatgtttt 709  Q
    ||||||||||    
T  51645931 tacatgtttt 51645922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 601 - 693
Target Start/End: Original strand, 11038577 - 11038669
Alignment:
Q  601 ggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaacttttg 693  Q
    |||||||||||||||||||||||||| ||||||| |||||||  ||||||||||||||||||||    |||  ||||||||||||||||||||    
T  11038577 ggcttaattgctattttagtcccttagctaattttttggtattgctttggtcccataactaaaaaaaagtctgttttggtattttaacttttg 11038669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 600 - 664
Target Start/End: Complemental strand, 36220659 - 36220595
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaa 664  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||||  |||||||||||||||||||    
T  36220659 aggcttaattgctattttagtaccttaactaattttttggtatcgttttggtcccataactaaaa 36220595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 600 - 658
Target Start/End: Original strand, 756486 - 756544
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataa 658  Q
    |||||||||||||||||| |||||||| ||||||| |||||||| ||||||||||||||    
T  756486 aggcttaattgctattttcgtcccttaactaattttttggtatcgctttggtcccataa 756544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 601 - 658
Target Start/End: Complemental strand, 702708 - 702651
Alignment:
Q  601 ggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataa 658  Q
    ||||||||||||||||| |||||||| ||||||| |||||||| ||||||||||||||    
T  702708 ggcttaattgctattttcgtcccttaactaattttttggtatcgctttggtcccataa 702651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 601 - 658
Target Start/End: Complemental strand, 771007 - 770950
Alignment:
Q  601 ggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataa 658  Q
    ||||||||||||||||| |||||||| ||||||| |||||||| ||||||||||||||    
T  771007 ggcttaattgctattttcgtcccttaactaattttttggtatcgctttggtcccataa 770950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 601 - 658
Target Start/End: Complemental strand, 35060511 - 35060454
Alignment:
Q  601 ggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataa 658  Q
    ||||||||||||||||| |||||||| ||||||| |||||||| ||||||||||||||    
T  35060511 ggcttaattgctattttcgtcccttaactaattttttggtatcgctttggtcccataa 35060454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 600 - 658
Target Start/End: Original strand, 16038274 - 16038332
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataa 658  Q
    ||||||||||| |||||| |||||||| ||||||| |||||||| ||||||||||||||    
T  16038274 aggcttaattgttattttcgtcccttaactaattttttggtatcgctttggtcccataa 16038332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 600 - 658
Target Start/End: Original strand, 35055332 - 35055390
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataa 658  Q
    ||||||||||| |||||| |||||||| ||||||| |||||||| ||||||||||||||    
T  35055332 aggcttaattgttattttcgtcccttaactaattttttggtatcgctttggtcccataa 35055390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 602 - 664
Target Start/End: Original strand, 36219408 - 36219470
Alignment:
Q  602 gcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaa 664  Q
    ||||||||||||||||||||||||| ||||||| |  |||||  |||||||||||||||||||    
T  36219408 gcttaattgctattttagtcccttaactaatttttgagtatcggtttggtcccataactaaaa 36219470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 601 - 658
Target Start/End: Original strand, 701633 - 701690
Alignment:
Q  601 ggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataa 658  Q
    ||||||||||||||||| |||||||| || |||| |||||||| ||||||||||||||    
T  701633 ggcttaattgctattttcgtcccttaacttattttttggtatcgctttggtcccataa 701690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 601 - 658
Target Start/End: Original strand, 769932 - 769989
Alignment:
Q  601 ggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataa 658  Q
    ||||||||||||||||| |||||||| || |||| |||||||| ||||||||||||||    
T  769932 ggcttaattgctattttcgtcccttaacttattttttggtatcgctttggtcccataa 769989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 600 - 658
Target Start/End: Complemental strand, 757558 - 757500
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataa 658  Q
    ||||||||||||||||||  ||||||| || |||| |||||||| ||||||||||||||    
T  757558 aggcttaattgctattttcatcccttaacttattttttggtatcgctttggtcccataa 757500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 600 - 664
Target Start/End: Complemental strand, 43292020 - 43291956
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaa 664  Q
    |||||||| |||| |||| |||||||| ||| ||  ||||||||||||||||||| |||||||||    
T  43292020 aggcttaaatgctcttttggtcccttaactatttaattggtatcactttggtcccttaactaaaa 43291956  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 603 - 658
Target Start/End: Complemental strand, 16039734 - 16039679
Alignment:
Q  603 cttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataa 658  Q
    ||||||||||||||| |||||||| ||||||| ||||||||  || ||||||||||    
T  16039734 cttaattgctatttttgtcccttaactaattttttggtatcgtttcggtcccataa 16039679  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 605 - 687
Target Start/End: Complemental strand, 50551468 - 50551386
Alignment:
Q  605 taattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaa 687  Q
    |||||| |||||||||||||||  |||||| ||||||||  ||| || ||||||||||||    |||| ||||||||||||||    
T  50551468 taattgttattttagtcccttaattaattttttggtatcggtttagttccataactaaaaaaaagtccgttttggtattttaa 50551386  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 600 - 664
Target Start/End: Original strand, 11649503 - 11649568
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaattt-gttggtatcactttggtcccataactaaaa 664  Q
    |||||||| |||| ||||||||||||| |||||||  |||||||| |||||| ||| |||||||||    
T  11649503 aggcttaaatgctcttttagtcccttaactaatttaattggtatcgctttggacccttaactaaaa 11649568  T

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Target: chr5 (Bit Score: 46; Significance: 7e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 600 - 709
Target Start/End: Complemental strand, 19718949 - 19718840
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaacttttgcgccgt 699  Q
    ||||||||||||||||||||||| ||| ||||||| |||||||| ||||| ||| ||||||||||     ||| |||||||||||||||||||   ||||    
T  19718949 aggcttaattgctattttagtcctttaactaattttttggtatcgctttgatcctataactaaaaaaaaatccgttttggtattttaacttttattccgt 19718850  T
Q  700 tacatgtttt 709  Q
     |||||||||    
T  19718849 cacatgtttt 19718840  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 600 - 687
Target Start/End: Original strand, 37966813 - 37966900
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtattttaa 687  Q
    ||||||||||| |||||| |||||||| ||| ||  || |||| ||||||||||||||| ||||||||| ||| ||||||||||||||    
T  37966813 aggcttaattgttattttcgtcccttaactatttaattagtattactttggtcccataattaaaatttgttccgttttggtattttaa 37966900  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 600 - 664
Target Start/End: Complemental strand, 30112769 - 30112705
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaa 664  Q
    ||||||||||||| |||||||||||||  || ||  |||||||| |||||||||| |||||||||    
T  30112769 aggcttaattgctcttttagtcccttaagtatttaattggtatcgctttggtcccttaactaaaa 30112705  T

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Target: scaffold0031 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 600 - 658
Target Start/End: Original strand, 123423 - 123481
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataa 658  Q
    |||||||||||||||||| |||||||| ||||||| |||||||  ||||||||||||||    
T  123423 aggcttaattgctattttcgtcccttaactaatttcttggtattgctttggtcccataa 123481  T

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Target: scaffold0031; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 600 - 658
Target Start/End: Complemental strand, 129478 - 129420
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataa 658  Q
    ||||||||||| |||||| |||||||| || |||| |||||||||||||||||||||||    
T  129478 aggcttaattgttattttcgtcccttaacttattttttggtatcactttggtcccataa 129420  T

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Target: scaffold0031; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 600 - 658
Target Start/End: Original strand, 134299 - 134357
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataa 658  Q
    |||||||||||||||||| |||||||| ||||||| |||||||  ||||||||||||||    
T  134299 aggcttaattgctattttcgtcccttaactaatttcttggtattgctttggtcccataa 134357  T

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Target: scaffold0194 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 600 - 664
Target Start/End: Complemental strand, 19304 - 19240
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaa 664  Q
    ||||||||||| || |||||| ||||| ||||||| ||| ||||  |||||||||||||||||||    
T  19304 aggcttaattgttactttagttccttaactaattttttgatatcggtttggtcccataactaaaa 19240  T

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Target: scaffold0194; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 603 - 664
Target Start/End: Original strand, 18070 - 18131
Alignment:
Q  603 cttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaa 664  Q
    ||||||| |||||||||||||||| ||||||| |  |||||  ||||||| |||||||||||    
T  18070 cttaattactattttagtcccttaactaatttttgagtatcggtttggtctcataactaaaa 18131  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 600 - 664
Target Start/End: Complemental strand, 242220 - 242156
Alignment:
Q  600 aggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaa 664  Q
    |||||||| |||| |||| |||||||| ||| ||  ||||||||||||||||||| |||||||||    
T  242220 aggcttaaatgctcttttggtcccttaactatttaattggtatcactttggtcccttaactaaaa 242156  T

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