View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4867-Insertion-8 (Length: 407)
Name: NF4867-Insertion-8
Description: NF4867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4867-Insertion-8 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 8 - 407
Target Start/End: Complemental strand, 2602828 - 2602430
Alignment:
| Q |
8 |
aataaagtttaaccctaaaccagctctttcggttttcctcagacctcaacttacaaactgagttgtctgccgaccttatgattttgttttaataatcata |
107 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2602828 |
aataaaatttaaccctaaaccagctctttcggttttcctcagacctcaactcacaaactgagttgtctgccgaccttatgattttgttttaataatcata |
2602729 |
T |
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| Q |
108 |
tttacattgactcttagatctgtcaccctctaaatgatgctcaccttgccatatagttgctgcaatcggaaccttgtcgacaaagaaattgtagggttat |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2602728 |
tttacattgactcttagatctgtcaccctctaaatgatgctcaccttgccatatagttgctgcaatcggaaccttgtcgacaaagaaattgtagggt-at |
2602630 |
T |
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| Q |
208 |
gtgtgcttgtgcatatgttgctcacaaaattgcttattttagtttcaataattcatgttaacaacctagtaatgtgctggaattggaaacaacttgcaaa |
307 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2602629 |
gtgtgcttgtgcatatgttactcacaaaattgcttattttagtttcaataattcatgttaacaacctagtaatgtgctggaattggaaacaacttgcaaa |
2602530 |
T |
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| Q |
308 |
atatctcaatcacaacttgtcatatattgtcaaaaaagaaaacctgtcagtatgtatttaattccttatccttttttctattttgtttgtttctctacta |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2602529 |
atatctcaatcacaacttgtcatatattgtcaaaaaagaaaacctgtcagtatgtatttaattccttatccttttttctattttgtttgtttctctacta |
2602430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 125 - 329
Target Start/End: Complemental strand, 2581266 - 2581063
Alignment:
| Q |
125 |
atctgtcaccctctaaatgatgctcaccttgccatatagttgctgcaatcggaaccttgtcgacaaagaaattgtagggttatgtgtgcttgt-gcatat |
223 |
Q |
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| T |
2581266 |
atctgtcaccctccaaaggatgctgaccttgccatatagtcgctgcaatcggaaccttgccgacacaaaatttgtacgc--atgtgtgctttttgcatgg |
2581169 |
T |
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| Q |
224 |
gttgctcacaaaattgcttattttagtttcaataattcatgttaacaacctagtaatgtgctggaattggaaacaacttgcaaaatatctcaatcacaac |
323 |
Q |
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| T |
2581168 |
ctcactcacaaaattgcttactttgatttcaacaattcatgttaaaaacctagcaatggtctgaaattggaaacaacttgcaaaatattccaatcataaa |
2581069 |
T |
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| Q |
324 |
ttgtca |
329 |
Q |
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|||||| |
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| T |
2581068 |
ttgtca |
2581063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 125 - 329
Target Start/End: Complemental strand, 2596014 - 2595811
Alignment:
| Q |
125 |
atctgtcaccctctaaatgatgctcaccttgccatatagttgctgcaatcggaaccttgtcgacaaagaaattgtagggttatgtgtgcttgt-gcatat |
223 |
Q |
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||||||||||||| ||| |||||| ||||||||||||||| |||||||||||||||||| ||||| | || ||||| | |||||||||| | |||| |
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| T |
2596014 |
atctgtcaccctccaaaggatgctgaccttgccatatagtcgctgcaatcggaaccttgccgacacaaaatttgtacgc--atgtgtgctttttgcatgg |
2595917 |
T |
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| Q |
224 |
gttgctcacaaaattgcttattttagtttcaataattcatgttaacaacctagtaatgtgctggaattggaaacaacttgcaaaatatctcaatcacaac |
323 |
Q |
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| |||||||||||||||| ||| |||||| |||||||||||| ||||||| |||| ||| |||||||||||||||||||||||| |||||| || |
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| T |
2595916 |
ctcactcacaaaattgcttactttgatttcaacaattcatgttaaaaacctagcaatggtctgaaattggaaacaacttgcaaaatattccaatcataaa |
2595817 |
T |
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| Q |
324 |
ttgtca |
329 |
Q |
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|||||| |
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| T |
2595816 |
ttgtca |
2595811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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