View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4867_high_15 (Length: 209)

Name: NF4867_high_15
Description: NF4867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4867_high_15
NF4867_high_15
[»] chr4 (3 HSPs)
chr4 (118-200)||(1560212-1560294)
chr4 (128-200)||(1561237-1561309)
chr4 (127-197)||(42856444-42856514)
[»] chr8 (3 HSPs)
chr8 (118-200)||(2377072-2377154)
chr8 (127-200)||(38119881-38119954)
chr8 (127-200)||(2380181-2380254)
[»] chr7 (1 HSPs)
chr7 (127-196)||(33329414-33329483)
[»] chr5 (2 HSPs)
chr5 (128-200)||(8284799-8284871)
chr5 (160-200)||(35237456-35237496)
[»] chr2 (1 HSPs)
chr2 (112-153)||(26273149-26273189)
[»] chr1 (1 HSPs)
chr1 (128-200)||(13324513-13324584)


Alignment Details
Target: chr4 (Bit Score: 71; Significance: 2e-32; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 118 - 200
Target Start/End: Complemental strand, 1560294 - 1560212
Alignment:
Q  118 ttttcctgggttttgatgatgaaggagatgaatgttgctggatttattgatgacgatgatgaatgttgctgggtttgatgatg 200  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  1560294 ttttcctgggttttgatgatgaaggtgatgaatgttactggatttattgatgaagatgatgaatgttgctgggtttgatgatg 1560212  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 1561237 - 1561309
Alignment:
Q  128 ttttgatgatgaaggagatgaatgttgctggatttattgatgacgatgatgaatgttgctgggtttgatgatg 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||    
T  1561237 ttttgatgatgaaggtgatgaatgttgctggatttattgatgaagatgataaatgttgctgggtatgatgatg 1561309  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 42856444 - 42856514
Alignment:
Q  127 gttttgatgatgaaggagatgaatgttgctggatttattgatgacgatgatgaatgttgctgggtttgatg 197  Q
    ||||||||||| || | ||||||| ||  ||| |||||||||||  ||||||||||||| |||||||||||    
T  42856444 gttttgatgattaatgtgatgaatttttttgggtttattgatgaaaatgatgaatgttgttgggtttgatg 42856514  T

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Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 118 - 200
Target Start/End: Complemental strand, 2377154 - 2377072
Alignment:
Q  118 ttttcctgggttttgatgatgaaggagatgaatgttgctggatttattgatgacgatgatgaatgttgctgggtttgatgatg 200  Q
    ||||||||| ||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2377154 ttttcctggattttgatgatgaaggtgataaatgttgctggatttattgatgaagatgatgaatgttgctgggtttgatgatg 2377072  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 38119954 - 38119881
Alignment:
Q  127 gttttgatgatgaaggagatgaatgttgctggatttattgatgacgatgatgaatgttgctgggtttgatgatg 200  Q
    |||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||    
T  38119954 gttttgatgatgaaggtgatgaatgttgctgggtttattgatgaagatgatgaatgttgttgggtttgatgatg 38119881  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 2380181 - 2380254
Alignment:
Q  127 gttttgatgatgaaggagatgaatgttgctggatttattgatgacgatgatgaatgttgctgggtttgatgatg 200  Q
    |||||||| ||||||| ||||||| || || | | ||||||||| |||||||||||||| ||| ||||||||||    
T  2380181 gttttgataatgaaggtgatgaatttttctaggtatattgatgaagatgatgaatgttgttggatttgatgatg 2380254  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 33329414 - 33329483
Alignment:
Q  127 gttttgatgatgaaggagatgaatgttgctggatttattgatgacgatgatgaatgttgctgggtttgat 196  Q
    |||||||||||||| | ||||||| ||  |||||||||||||||  ||||||||||||||||||||||||    
T  33329414 gttttgatgatgaatgtgatgaatttttttggatttattgatgaaaatgatgaatgttgctgggtttgat 33329483  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 8284799 - 8284871
Alignment:
Q  128 ttttgatgatgaaggagatgaatgttgctggatttattgatgacgatgatgaatgttgctgggtttgatgatg 200  Q
    |||| |||||||||| |||||||||||||| |||||||||||| ||||| |||  ||| ||||||||||||||    
T  8284799 tttttatgatgaaggtgatgaatgttgctgcatttattgatgaagatgacgaacattgttgggtttgatgatg 8284871  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 35237496 - 35237456
Alignment:
Q  160 tttattgatgacgatgatgaatgttgctgggtttgatgatg 200  Q
    |||||| |||| |||||||||||||||||| ||||||||||    
T  35237496 tttattaatgaagatgatgaatgttgctggatttgatgatg 35237456  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 153
Target Start/End: Original strand, 26273149 - 26273189
Alignment:
Q  112 gatgaattttcctgggttttgatgatgaaggagatgaatgtt 153  Q
    ||||||||||||||||||| ||||||||||| ||||||||||    
T  26273149 gatgaattttcctgggttt-gatgatgaaggggatgaatgtt 26273189  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 13324584 - 13324513
Alignment:
Q  128 ttttgatgatgaaggagatgaatgttgctggatttattgatgacgatgatgaatgttgctgggtttgatgatg 200  Q
    ||||||||||||||| ||||||| ||  ||| ||||| ||||| |||||||||| ||  ||||||||||||||    
T  13324584 ttttgatgatgaaggtgatgaatttttatgggtttatggatgaagatgatgaat-tttatgggtttgatgatg 13324513  T

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