View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4867_high_3 (Length: 289)
Name: NF4867_high_3
Description: NF4867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4867_high_3 |
 | |
|
| [»] scaffold1063 (1 HSPs) |
| | |
|
| [»] scaffold0037 (1 HSPs) |
| | |
|
| [»] scaffold0599 (1 HSPs) |
| | |
|
| [»] scaffold1050 (1 HSPs) |
| | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 275
Target Start/End: Complemental strand, 32275763 - 32275504
Alignment:
| Q |
13 |
acttaagtcacgtagcgcatgttaacttgcgttaaatactattttcgtttaaaatccagcaggcaaccacaaagctccannnnnnnnnctttccctccac |
112 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
32275763 |
acttaagtcacgtagcgcatgttaacttgtgttaagtactattttcgttcaaaatccagcaggcaaccacaaagctccatttttt---cttttcctccac |
32275667 |
T |
|
| Q |
113 |
ctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagcatcaaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
32275666 |
ctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatctttgcaaatcgtcaggaaacaaatttctacgctcatcaagcatcaaa |
32275567 |
T |
|
| Q |
213 |
gaacaggtgatgtaccgtcaaaactctttcatttttgctggttttgctggtagtatcgttttt |
275 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32275566 |
gaacatgtaatgtaccgtcaaaactctttcatttttgctggttttgctggtagtatcgttttt |
32275504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 28 - 254
Target Start/End: Complemental strand, 31522550 - 31522327
Alignment:
| Q |
28 |
cgcatgttaacttgcgttaaatactattttcgtttaaaatccagcaggcaaccacaaagctccannnnnnnnnctttccctccacctccaaaaaccccaa |
127 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||| |||| |||||| ||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31522550 |
cgcaagttaacttgcgttaagtactattttcgttcaaaacccagcaagcaaccacatagctccatttttt---ctttccctccacctccaaaaaccccaa |
31522454 |
T |
|
| Q |
128 |
aagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagcatcaaagaacaggtgatgtac |
227 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||| |
|
|
| T |
31522453 |
aagtgcgaaattttgggtaaaaatcttaattccaaatcattgcaaatcgtcaggaaacaagtttctatgctcatcaagcatcaaagaacaggtaatgtac |
31522354 |
T |
|
| Q |
228 |
cgtcaaaactctttcatttttgctggt |
254 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
31522353 |
cgtcaaaactctttcatttttgctggt |
31522327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 123 - 274
Target Start/End: Complemental strand, 4321635 - 4321492
Alignment:
| Q |
123 |
cccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagcatcaaagaacaggtga |
222 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||| | || | ||||||| ||||||||||| ||||||||||||||| | |
|
|
| T |
4321635 |
cccaaaagtgcaaaattttgggtaaaaatcttcattccaaatcatt--------tttgggtaaaagtttctacgctcatcaatcatcaaagaacaggtaa |
4321544 |
T |
|
| Q |
223 |
tgtaccgtcaaaactctttcatttttgctggttttgctggtagtatcgtttt |
274 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4321543 |
tgtaccatcaaaactctttcatttttgctggttttgctggtagtatcgtttt |
4321492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 101 - 212
Target Start/End: Complemental strand, 13543788 - 13543678
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| || |||| ||| |||||| | ||||||||||||||||||||| ||||| |||| ||| ||||||| |
|
|
| T |
13543788 |
ctttccctccacctccaaaaacccaaaaggtgc-aattttttggtcaaaatctttattccaaatcattgcaaatcggtaggaagcaagcttctacgctca |
13543690 |
T |
|
| Q |
201 |
tcaagcatcaaa |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
13543689 |
tcaagcatcaaa |
13543678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 8518521 - 8518615
Alignment:
| Q |
110 |
cacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaa |
204 |
Q |
| |
|
|||||| |||||||| |||||||| || |||| || |||||||||||| |||||||||| |||||| |||| |||||||| ||| ||||||| |
|
|
| T |
8518521 |
cacctctaaaaacccaaaaagtgcaaatttttatgtcaaaatcatcatttcaaatcattgttaatcgttgggaagcaagtttctacgttcatcaa |
8518615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 16)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 15 - 277
Target Start/End: Original strand, 24972529 - 24972787
Alignment:
| Q |
15 |
ttaagtcacgtagcgcatgttaacttgcgttaaatactattttcgtttaaaatccagcaggcaaccacaaagctccannnnnnnnnctttccctccacct |
114 |
Q |
| |
|
||||||| ||||||||||||||||||||||| | ||||||||||||| |||| | ||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
24972529 |
ttaagtcccgtagcgcatgttaacttgcgttgagtactattttcgttcaaaacctagcagacaaccacaaagctccattttt----ctttccctccacct |
24972624 |
T |
|
| Q |
115 |
ccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagcatcaaaga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
24972625 |
ccaaaaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaacaagtttctacgctcatcaagcatcaaata |
24972724 |
T |
|
| Q |
215 |
acaggtgatgtaccgtcaaaactctttcatttttgctggttttgctggtagtatcgtttttca |
277 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
24972725 |
acaggtaatgtaccgtcaaaactttttcatttttgctggttttgctggtagttttgtttttca |
24972787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 36499045 - 36499281
Alignment:
| Q |
15 |
ttaagtcacgtagcgcatgttaacttgcgttaaatactattttcgtttaaaatccagcaggcaaccacaaagctccannnnnnnnnctttccctccacct |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |||| | |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36499045 |
ttaagtcacgtagcgcatgttaacttgcgttaagtactattttcgttcaaaaccaagcaggcaaccacaaagctccatttttt---ctttccctccacct |
36499141 |
T |
|
| Q |
115 |
ccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagcatcaaaga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
36499142 |
ccaaaaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaacaaatttctacgctcatcaagcatcaaaga |
36499241 |
T |
|
| Q |
215 |
acaggtgatgtaccgtcaaaactctttcatttttgctggt |
254 |
Q |
| |
|
|||||| || ||||||||||||| |||||||||||||||| |
|
|
| T |
36499242 |
acaggtaatttaccgtcaaaactttttcatttttgctggt |
36499281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 45246973 - 45246734
Alignment:
| Q |
13 |
acttaagtcacgtagcgcatgttaacttgcgttaaatactattttcgtttaaaatccagcaggcaaccacaaagctccannnnnnnnnctttccctccac |
112 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
45246973 |
acttaagtcacgtagcgcatattaacttgctttaaatactattttcgttcaaaatccagcaggcaaccacaaagctcgacttttc---ctttccctccac |
45246877 |
T |
|
| Q |
113 |
ctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagcatcaaa |
212 |
Q |
| |
|
|||||||||| | ||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45246876 |
ctccaaaaactctaaaagtgtgaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaagaaacaagtttccacgctcatcaagcatcaaa |
45246777 |
T |
|
| Q |
213 |
gaacaggtgatgtaccgtcaaaactctttcatttttgctggtt |
255 |
Q |
| |
|
|||||||| ||||||||||||||||| ||| |||||||||||| |
|
|
| T |
45246776 |
gaacaggtaatgtaccgtcaaaactcattcgtttttgctggtt |
45246734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 23283304 - 23283529
Alignment:
| Q |
19 |
gtcacgtagcgcatgttaacttgcgttaaatactattttcgtttaaaatccagcaggcaaccacaaagctccannnnnnnnnctttccctccacctccaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| ||||||||| | ||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
23283304 |
gtcacgtagcgcatgttaacttgcgttaagtactattttcgttcaaaatccagtatgcaaccataaagctccatttttt---ctttccctccacctccaa |
23283400 |
T |
|
| Q |
119 |
aaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagcatcaaagaacag |
218 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23283401 |
aaaccccaaaagtgcaaaattttgggtaaaaatcttcattctaaatcattgcaaatcgtcaggaaacaagtttctacgctcatcaagcatcaaagaacag |
23283500 |
T |
|
| Q |
219 |
gtgatgtaccgtcaaaactctttcatttt |
247 |
Q |
| |
|
|| ||||||||||||||| ||||||||| |
|
|
| T |
23283501 |
gtaatgtaccgtcaaaaccttttcatttt |
23283529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 55523864 - 55524100
Alignment:
| Q |
15 |
ttaagtcacgtagcgcatgttaacttgcgttaaatactattttcgtttaaaatccagcaggcaaccacaaagctccannnnnnnnnctttccctccacct |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
55523864 |
ttaagtcacgtagcgcatgttaacttgcgttaagtactattttcgttcaaaacccagtaggcaaccacaaagctccatttttt---ctttccctccacct |
55523960 |
T |
|
| Q |
115 |
ccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagcatcaaaga |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
55523961 |
gcaaaaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatcattgtaaatcgtcaggaaacaagtttctacgctcatcaagcatcaaaga |
55524060 |
T |
|
| Q |
215 |
acaggtgatgtaccgtcaaaactctttcatttttgctggt |
254 |
Q |
| |
|
| | || ||| || |||||||| |||||||||||||||| |
|
|
| T |
55524061 |
atatgtaatgaacgttcaaaactttttcatttttgctggt |
55524100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 15 - 278
Target Start/End: Original strand, 12586324 - 12586577
Alignment:
| Q |
15 |
ttaagtcacgtagcgcatgttaacttgcgttaaatactattttcgtttaaaatccagcaggcaaccacaaagctccannnnnnnnnctttccctccacct |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| ||||||| ||| ||||| |||||||||||||| |
|
|
| T |
12586324 |
ttaagtcacgtagcgcatgttaacttgcgttaagtactattttcgttcaaaacccagcatgcaaccataaaactccatttttt---ctttccctccacct |
12586420 |
T |
|
| Q |
115 |
ccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagcatcaaaga |
214 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||| | |
|
|
| T |
12586421 |
ccaaaaaccccaaaagtgcaaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaataagtttctacgct-------catcaaaca |
12586513 |
T |
|
| Q |
215 |
acaggtgatgtaccgtcaaaactctttcatttttgctggttttgctggtagtatcgtttttcat |
278 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||| | |||||||||||||| ||||||||||| |
|
|
| T |
12586514 |
acaggtaatgtaccgtcaaaactttttcatttttgttagttttgctggtagtttcgtttttcat |
12586577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 101 - 225
Target Start/End: Complemental strand, 22182276 - 22182152
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| | |||| ||| |||||| |||||||||||||||||||||||| | ||| |||||||| ||||||| |
|
|
| T |
22182276 |
ctttccctccacctccaaaaacccaaaaagtgcaattttttaggtcaaaatcttcattccaaatcattgcaaatcgttaagaagcaagtttctacgctca |
22182177 |
T |
|
| Q |
201 |
tcaagcatcaaagaacaggtgatgt |
225 |
Q |
| |
|
|||||||||||| | ||||| |||| |
|
|
| T |
22182176 |
tcaagcatcaaatatcaggtaatgt |
22182152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 101 - 238
Target Start/End: Complemental strand, 50008932 - 50008795
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
||||||||| |||| |||||||| |||||||||| |||||||| |||||| |||| ||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
50008932 |
ctttccctcgaccttcaaaaaccaaaaaagtgcgattttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttctacgctca |
50008833 |
T |
|
| Q |
201 |
tcaagcatcaaagaacaggtgatgtaccgtcaaaactc |
238 |
Q |
| |
|
||||||| |||| | ||||| |||| | ||||||||| |
|
|
| T |
50008832 |
tcaagcaccaaatatcaggtattgtatcatcaaaactc |
50008795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 101 - 212
Target Start/End: Complemental strand, 43210125 - 43210016
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||| |||||||| |||||| |||| ||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
43210125 |
ctttccctccaccttcaaaaacc--aaaagtgcgattttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttctacgctca |
43210028 |
T |
|
| Q |
201 |
tcaagcatcaaa |
212 |
Q |
| |
|
||||||| |||| |
|
|
| T |
43210027 |
tcaagcaccaaa |
43210016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 101 - 192
Target Start/End: Complemental strand, 156981 - 156890
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttc |
192 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| |||||||| |||||| |||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
156981 |
ctttccctccaccttcaaaaacccaaaaagtgcgaatttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttc |
156890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 101 - 212
Target Start/End: Original strand, 33990766 - 33990877
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
|||||| ||||||| ||||||||| |||||||||| |||||||| |||||| |||| ||||||||||||||||||||| ||| |||||||| ||||||| |
|
|
| T |
33990766 |
ctttccttccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcatgaatcaagtttctacgctca |
33990865 |
T |
|
| Q |
201 |
tcaagcatcaaa |
212 |
Q |
| |
|
||||||| |||| |
|
|
| T |
33990866 |
tcaagcaccaaa |
33990877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 101 - 238
Target Start/End: Complemental strand, 50336327 - 50336190
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||| |||||||| |||||| |||| ||||| ||||||||||||||| ||| |||||||| | ||||| |
|
|
| T |
50336327 |
ctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcctcatcccaaaccattgcaaatcgtcatgaagcaagtttctatgctca |
50336228 |
T |
|
| Q |
201 |
tcaagcatcaaagaacaggtgatgtaccgtcaaaactc |
238 |
Q |
| |
|
||||||| |||| | ||||| |||| | ||||||||| |
|
|
| T |
50336227 |
tcaagcaccaaatatcaggtattgtatcatcaaaactc |
50336190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 101 - 212
Target Start/End: Original strand, 1938584 - 1938695
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||| |||||||| |||||| |||| |||||||||||||||||||||| || ||||||| | ||||| |
|
|
| T |
1938584 |
ctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcagaaagaaagtttctatgctca |
1938683 |
T |
|
| Q |
201 |
tcaagcatcaaa |
212 |
Q |
| |
|
||||||| |||| |
|
|
| T |
1938684 |
tcaagcaccaaa |
1938695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 101 - 212
Target Start/End: Original strand, 41418915 - 41419026
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||| |||||||| |||||| |||| |||||||||| |||||||| |||| |||||||| ||||||| |
|
|
| T |
41418915 |
ctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcctcatcccaaatcattacaaatcgttaggacgcaagtttctacgctca |
41419014 |
T |
|
| Q |
201 |
tcaagcatcaaa |
212 |
Q |
| |
|
||||||| |||| |
|
|
| T |
41419015 |
tcaagcaccaaa |
41419026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 101 - 212
Target Start/End: Original strand, 12656519 - 12656637
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaat-------tttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttcc |
193 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| | ||||||| |||||| | || |||||||||||||||||||||| || |||||||| |
|
|
| T |
12656519 |
ctttccctccaccttcaaaaacccaaaaagtgcgaagtgcgattttttgggtcaaaatccttatcccaaatcattgcaaatcgtcagaaagcaagtttct |
12656618 |
T |
|
| Q |
194 |
acgctcatcaagcatcaaa |
212 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
12656619 |
acgctcatcaagcaccaaa |
12656637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 208
Target Start/End: Complemental strand, 6599469 - 6599370
Alignment:
| Q |
110 |
cacctccaaaaacccc-aaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagcat |
208 |
Q |
| |
|
|||||||||||||||| |||| |||||| |||| |||||||||| ||||| ||||||||||||| |||||||||| || ||||| | ||| ||||||||| |
|
|
| T |
6599469 |
cacctccaaaaacccccaaaaatgcgaattttttggtaaaaatcttcatttcaaatcattgcaagtcgtcaggaagcaggtttctatgcttatcaagcat |
6599370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 12 - 278
Target Start/End: Complemental strand, 33403087 - 33402824
Alignment:
| Q |
12 |
aacttaagtcacgtagcgcatgttaacttgcgttaaatactattttcgtttaaaatccagcaggcaaccacaaagctccannnnnnnnnctttccctcca |
111 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||| ||||| ||||| ||||| |
|
|
| T |
33403087 |
aacttaagtcacgcagcgcatgttaacttgcgttaagtactattttcgttcaaaatccagcaggcaaccataaaactccatttttt---ctttcgctcca |
33402991 |
T |
|
| Q |
112 |
cctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagcatcaa |
211 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||| |||||||| ||||||||| |
|
|
| T |
33402990 |
cctctaaaaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatcattgcaaatcttccggaaacaagtttctacgctcattaagcatcaa |
33402891 |
T |
|
| Q |
212 |
agaacaggtgatgtaccgtcaaaactctttcatttttgctggttttgctggtagtatcgtttttcat |
278 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33402890 |
agaacaggtaatgtaccgtcaaaactttttcatttttgctggttttgctggtagtttcgtttttcat |
33402824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 15 - 278
Target Start/End: Complemental strand, 35577463 - 35577204
Alignment:
| Q |
15 |
ttaagtcacgtagcgcatgttaacttgcgttaaatactattttcgtttaaaatccagcaggcaaccacaaagctccannnnnnnnnctttccctccacct |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||| |||||| |||| | ||||||| |
|
|
| T |
35577463 |
ttaagtcacgtagcgcatgttaacttgcgttaagtactattttcgttcaaaacccagcaggcaaccacagagctcc----ttttttcttttcgtccacct |
35577368 |
T |
|
| Q |
115 |
ccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagcatcaaaga |
214 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35577367 |
ccaaaaaccccaaaagtgcgaaatttttggtaaaaatactcattccaaatcattgcaaatcgttaggaaacaagtttctacgctcatcaagcatcaaaga |
35577268 |
T |
|
| Q |
215 |
acaggtgatgtaccgtcaaaactctttcatttttgctggttttgctggtagtatcgtttttcat |
278 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
35577267 |
acaggtaatgtaccgtcaaaactttttcatttttgctggttttgctgatagtttcgtttttcat |
35577204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 15 - 278
Target Start/End: Original strand, 48025677 - 48025936
Alignment:
| Q |
15 |
ttaagtcacgtagcgcatgttaacttgcgttaaatactattttcgtttaaaatccagcaggcaaccacaaagctccannnnnnnnnctttccctccacct |
114 |
Q |
| |
|
||||| |||||| |||||||||||||||||||| ||||||||| ||| |||| | | ||| |||||||||||||||| |||||||||||||| |
|
|
| T |
48025677 |
ttaagacacgtaccgcatgttaacttgcgttaagtactatttttgttcaaaacctatcagacaaccacaaagctccatttttt---ctttccctccacct |
48025773 |
T |
|
| Q |
115 |
ccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagcatcaaaga |
214 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| | ||||||||||||||||||| |
|
|
| T |
48025774 |
ccaaaa-ccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatcattgcaaatcatcaagaaacaagtttctatgctcatcaagcatcaaaga |
48025872 |
T |
|
| Q |
215 |
acaggtgatgtaccgtcaaaactctttcatttttgctggttttgctggtagtatcgtttttcat |
278 |
Q |
| |
|
|||||| |||||| ||||||||| ||||||||||| |||||||||| ||||| ||||||||||| |
|
|
| T |
48025873 |
acaggtaatgtactgtcaaaactttttcatttttgttggttttgctagtagtttcgtttttcat |
48025936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 101 - 236
Target Start/End: Original strand, 25817620 - 25817755
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||| |||||||| |||||| || ||||||||||||||||||||||| || |||||||| ||||| |
|
|
| T |
25817620 |
ctttccctccacctccaaaaacccaaaaagtgtgaatttttgggtcaaaatcttcgttccaaatcattgcaaatcgtcataaagcaagtttctgcgctcg |
25817719 |
T |
|
| Q |
201 |
tcaagcatcaaagaacaggtgatgtaccgtcaaaac |
236 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
25817720 |
tcaagcatcatagaacaggtaatgtaccgtcaaaac |
25817755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 101 - 257
Target Start/End: Original strand, 3368241 - 3368397
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||| |||||| |||||| |||||||||||||| ||||||| |||||||| || || | |
|
|
| T |
3368241 |
ctttccctccacctccaaaaacccaaaaagtgcgattatttgggtcaaaatcttcattcataatcattgcaaatcatcaggaagcaagtttctacactta |
3368340 |
T |
|
| Q |
201 |
tcaagcatcaaagaacaggtgatgtaccgtcaaaactctttcatttttgctggtttt |
257 |
Q |
| |
|
|||||||||||| | || || ||||| | ||||||||| ||| |||||||| ||||| |
|
|
| T |
3368341 |
tcaagcatcaaacatcaagtaatgtatcatcaaaactcattcgtttttgctagtttt |
3368397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 101 - 212
Target Start/End: Complemental strand, 16315262 - 16315151
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
|||||||||||||| || |||||| |||||||||| |||||| | |||||| |||| ||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
16315262 |
ctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttctacgctca |
16315163 |
T |
|
| Q |
201 |
tcaagcatcaaa |
212 |
Q |
| |
|
||||||| |||| |
|
|
| T |
16315162 |
tcaagcaccaaa |
16315151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 23941639 - 23941776
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||| | |||||||| |||| | |||| ||||||||||||||||||||||||| |||||||| ||| ||| |
|
|
| T |
23941639 |
ctttccctccaccttcaaaaacccaaaaagtgcaattttttgggtcaaaaccctcatcccaaatcattgcaaatcgtcaggaagcaagtttctacgttca |
23941738 |
T |
|
| Q |
201 |
tcaagcatcaaagaacaggtgatgtaccgtcaaaactc |
238 |
Q |
| |
|
||||||| |||| | ||||| |||| | ||||||||| |
|
|
| T |
23941739 |
tcaagcaccaaatatcaggtattgtatcatcaaaactc |
23941776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 207
Target Start/End: Original strand, 12063564 - 12063670
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
||||||||| ||| ||||||||| ||||||| || |||||||| |||||| |||| ||||||||||||||||||||||||| |||||||| || |||| |
|
|
| T |
12063564 |
ctttccctcttccttcaaaaacccaaaaagtgtgattttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttctacactca |
12063663 |
T |
|
| Q |
201 |
tcaagca |
207 |
Q |
| |
|
||||||| |
|
|
| T |
12063664 |
tcaagca |
12063670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 201
Target Start/End: Complemental strand, 30704442 - 30704342
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||| |||||||| ||||| |||| |||||||||||||||||||||||| |||||||| || |||| |
|
|
| T |
30704442 |
ctttccctccaccttcaaaaacccaaaaagtgcgactttttgggtcaaaattctcatctcaaatcattgcaaatcgtcaggaagcaagtttctacactca |
30704343 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
30704342 |
t |
30704342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 254
Target Start/End: Complemental strand, 18426440 - 18426347
Alignment:
| Q |
161 |
aaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagcatcaaagaacaggtgatgtaccgtcaaaactctttcatttttgctggt |
254 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||| | ||||| | ||| | ||||| | || ||||||||| |||||||||| |
|
|
| T |
18426440 |
aaatcattgcaaatcgtcaggaagcaagtttctacgctcatcaaacgtcaaaaatcagataatgtatcatctaaactcttttcattttgctggt |
18426347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 15 - 278
Target Start/End: Original strand, 34276331 - 34276590
Alignment:
| Q |
15 |
ttaagtcacgtagcgcatgttaacttgcgttaaatactattttcgtttaaaatccagcaggcaaccacaaagctccannnnnnnnnctttccctccacct |
114 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||| | || |||||||||| |
|
|
| T |
34276331 |
ttaagtcacgtagcggatgttaacttgcgttaagtactattttcgttcaaaacccagcaggcaaccacaaagctcaatttttt----ttcccctccacct |
34276426 |
T |
|
| Q |
115 |
ccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagcatcaaaga |
214 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||| |||||| ||||||||| |
|
|
| T |
34276427 |
ccaaaaaccccaaaagagagaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcatgaaacaagtttctacgcccatcaaccatcaaaga |
34276526 |
T |
|
| Q |
215 |
acaggtgatgtaccgtcaaaactctttcatttttgctggttttgctggtagtatcgtttttcat |
278 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
34276527 |
acaggtgatgtaccgtcaaaactttttcatttttgctagttttgctggtagtttcgtttttcat |
34276590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 24626168 - 24626061
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
|||||||| ||||||||||||| | |||||||| | ||||||||||||||| |||||||||||||||||||||| ||| ||| |||||||| ||||||| |
|
|
| T |
24626168 |
ctttccctgcacctccaaaaacacaaaaagtgcaattttttgggtaaaaatcttcattccaaatcattgcaaatcatcatgaagcaagtttctacgctca |
24626069 |
T |
|
| Q |
201 |
tcaagcat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
24626068 |
tcaagcat |
24626061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 257
Target Start/End: Complemental strand, 2807291 - 2807136
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
||||||||||||||| |||| ||| |||||| | | |||||||| |||||| ||||| ||||||||||||||||| ||||| |||||| |||||| |
|
|
| T |
2807291 |
ctttccctccacctctaaaa-cccaaaaagtacaattttttgggtcaaaatcttcatttgaaatcattgcaaatcgttaggaagcaagttcttacgctcg |
2807193 |
T |
|
| Q |
201 |
tcaagcatcaaagaacaggtgatgtaccgtcaaaactctttcatttttgctggtttt |
257 |
Q |
| |
|
|||| ||||||||||||||| ||||| | ||||||||| | | |||||||| ||||| |
|
|
| T |
2807192 |
tcaaacatcaaagaacaggtaatgtatcatcaaaactcatccgtttttgctagtttt |
2807136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 226
Target Start/End: Original strand, 32075054 - 32075154
Alignment:
| Q |
126 |
aaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagcatcaaagaacaggtgatgt |
225 |
Q |
| |
|
||||||| ||| |||||||| |||||| |||| ||||||||||| ||||| ||||||| |||||||| ||||||||||||||||||| | ||||| |||| |
|
|
| T |
32075054 |
aaaagtgtgaatttttgggtcaaaatcctcatcccaaatcattgtaaatcatcaggaagcaagtttctacgctcatcaagcatcaaatatcaggtaatgt |
32075153 |
T |
|
| Q |
226 |
a |
226 |
Q |
| |
|
| |
|
|
| T |
32075154 |
a |
32075154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 212
Target Start/End: Complemental strand, 13868307 - 13868202
Alignment:
| Q |
107 |
ctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagc |
206 |
Q |
| |
|
|||||||||||||||| | |||||||| || |||||||| ||| || ||||| |||||||||||||||||| |||| ||||||| || |||||||||| |
|
|
| T |
13868307 |
ctccacctccaaaaactcaaaaagtgcaaatttttgggtcaaattcttcatttcaaatcattgcaaatcgtggggaagtaagtttctacactcatcaagc |
13868208 |
T |
|
| Q |
207 |
atcaaa |
212 |
Q |
| |
|
|||||| |
|
|
| T |
13868207 |
atcaaa |
13868202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 257
Target Start/End: Complemental strand, 27188276 - 27188157
Alignment:
| Q |
138 |
ttttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagcatcaaagaacaggtgatgtaccgtcaaaact |
237 |
Q |
| |
|
|||||||| |||||| ||||| ||||||||||| |||||||||||| ||| ||||||||| |||||| ||| ||| | ||||| ||||| | || |||| |
|
|
| T |
27188276 |
ttttgggttaaaatcttcatttcaaatcattgctaatcgtcaggaagcaaatttccacgcccatcaatcataaaaaatcaggtaatgtatcatcttaact |
27188177 |
T |
|
| Q |
238 |
ctttcatttttgctggtttt |
257 |
Q |
| |
|
| || | ||||||||||||| |
|
|
| T |
27188176 |
catttaattttgctggtttt |
27188157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 14189784 - 14189893
Alignment:
| Q |
101 |
ctttccctcc--acctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgct |
198 |
Q |
| |
|
|||||||||| |||||||||| | | ||||||| || |||||||| |||||| ||||| |||||||||||||||||| ||||| ||||| | ||||| |
|
|
| T |
14189784 |
ctttccctccctacctccaaaatctcaaaaagtgtgattttttgggtcaaaatcttcatttcaaatcattgcaaatcgttaggaagaaagttactacgct |
14189883 |
T |
|
| Q |
199 |
catcaagcat |
208 |
Q |
| |
|
|||||||||| |
|
|
| T |
14189884 |
catcaagcat |
14189893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 20532173 - 20532101
Alignment:
| Q |
154 |
tcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagcatcaaagaacaggtgatgta |
226 |
Q |
| |
|
||||||||||||||||||||| || |||| |||||||| ||||||||||||||||||| | ||||| ||||| |
|
|
| T |
20532173 |
tcattccaaatcattgcaaattgtatggaagcaagtttctacgctcatcaagcatcaaataccaggtaatgta |
20532101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 136
Target Start/End: Original strand, 33228289 - 33228374
Alignment:
| Q |
48 |
atactattttcgtttaaaatccagcaggcaaccacaaagctccannnnnnnnnctttccctccacctccaaaaaccccaaaagtgcgaa |
136 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
33228289 |
atactattttcgttcaaaacccagcaggcaaccacaaagctcca---ttttttcttttcctccacctccaaaaacccaaaaagtgcgaa |
33228374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 41601124 - 41601191
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcatt |
168 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||| |||||||| |||||| |||| |||||||||| |
|
|
| T |
41601124 |
ctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcctcatcccaaatcatt |
41601191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 20534417 - 20534367
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaat |
151 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
20534417 |
ctttccctccaccttcaaaaacccaaaaagtgcgaaattttgggtcaaaat |
20534367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 207
Target Start/End: Original strand, 22661933 - 22661972
Alignment:
| Q |
168 |
tgcaaatcgtcaggaaacaagtttccacgctcatcaagca |
207 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
22661933 |
tgcaaatcgtcaggaagcaagtttctacgctcatcaagca |
22661972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 15)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 15 - 278
Target Start/End: Complemental strand, 34086779 - 34086517
Alignment:
| Q |
15 |
ttaagtcacgtagcgcatgttaacttgcgttaaatactattttcgtttaaaatccagcaggcaaccacaaagctccannnnnnnnnctttccctccacct |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| | |||| ||| ||| |||||||||||||||| |||||||||||||| |
|
|
| T |
34086779 |
ttaagtcacgtagcgcatgttaacttgcgttaagtactattttcgctcaaaacccaacagacaaccacaaagctccatttttt---ctttccctccacct |
34086683 |
T |
|
| Q |
115 |
ccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttc--cacgctcatcaagcatcaaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||| || |||||||||| |
|
|
| T |
34086682 |
ccaaaaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaataagtttctacacgcttattaagcatcaaa |
34086583 |
T |
|
| Q |
213 |
gaacaggtgatgtaccgtcaaaactctttcatttttgctggttttgctggtagtatcgtttttcat |
278 |
Q |
| |
|
|||| | | |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34086582 |
gaacggataatgtaccgtcaaaactttttcatttttgctggttttgctggtagtttcgtttttcat |
34086517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 15 - 278
Target Start/End: Complemental strand, 7666906 - 7666647
Alignment:
| Q |
15 |
ttaagtcacgtagcgcatgttaacttgcgttaaatactattttcgtttaaaatccagcaggcaaccacaaagctccannnnnnnnnctttccctccacct |
114 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||| ||| |||| ||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
7666906 |
ttaagtcacgtagcgcatgtta-cttgcgttaagtactatttttgttcaaaacccagcaggcaaccactaagctccatttttt---ctttccctccacct |
7666811 |
T |
|
| Q |
115 |
ccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagcatcaaaga |
214 |
Q |
| |
|
|||||||||| |||||||||||||||| || |||||| |||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
7666810 |
ccaaaaacccaaaaagtgcgaaatttttgggtaaaatcttcattccaaatcattgcaaatcatcaggaaataagtttctacgctcatcaagcatcaaaga |
7666711 |
T |
|
| Q |
215 |
acaggtgatgtaccgtcaaaactctttcatttttgctggttttgctggtagtatcgtttttcat |
278 |
Q |
| |
|
||| || |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7666710 |
acatgtaatgtaccgtcaaaactttttcatttttgctggttttgctggtagtttcgtttttcat |
7666647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 15 - 276
Target Start/End: Original strand, 19866872 - 19867130
Alignment:
| Q |
15 |
ttaagtcacgtagcgcatgttaacttgcgttaaatactattttcgtttaaaatccagcaggcaaccacaaagctccannnnnnnnnctttccctccacct |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| || |||| ||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
19866872 |
ttaagtcacgtagcgcatgttaacttgcgttaagtactattttcattcaaaacccagcaggcaaccacaa-gctccatttttt---ctttccctccacct |
19866967 |
T |
|
| Q |
115 |
ccaaaaacc-ccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagcatcaaag |
213 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19866968 |
ccaaaaacctccaaaagtgcgaaattttgggtgaaaatcttcattccaaatcattgtaaattgtcaggaaacaagtttctacgctcatcaagcatcaaag |
19867067 |
T |
|
| Q |
214 |
aacaggtgatgtaccgtcaaaactctttcatttttgctggttttgctggtagtatcgtttttc |
276 |
Q |
| |
|
||||||| ||||| |||||||||| |||||||||||||||||||| ||||||| ||| ||||| |
|
|
| T |
19867068 |
aacaggtaatgtatcgtcaaaactttttcatttttgctggttttgttggtagtttcgcttttc |
19867130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 12 - 278
Target Start/End: Original strand, 35063052 - 35063314
Alignment:
| Q |
12 |
aacttaagtcacgtagcgcatgttaacttgcgttaaatactattttcgtttaaaatccagcaggcaaccacaaagctccannnnnnnnnctttccctcca |
111 |
Q |
| |
|
||||||| | || ||||||||||||||||||||||| || |||||||||| |||| |||||||||||||||||||||| | ||||||||||| |
|
|
| T |
35063052 |
aacttaaatgacatagcgcatgttaacttgcgttaagtattattttcgttcaaaacccagcaggcaaccacaaagctctatttttt---ctttccctcca |
35063148 |
T |
|
| Q |
112 |
cctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagcatcaa |
211 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| | | |||||||||||||||||||||| |||||||||||| |||||||||||| ||||| |
|
|
| T |
35063149 |
cctccaaaaatcccaaaagtgcgaaattttgggtaaaaatctttaatccaaatcattgcaaatcgtca-gaaacaagtttctacgctcatcaagtatcaa |
35063247 |
T |
|
| Q |
212 |
agaacaggtgatgtaccgtcaaaactctttcatttttgctggttttgctggtagtatcgtttttcat |
278 |
Q |
| |
|
|||| |||| ||||| ||||||||| ||||||||||| ||||||||||| |||| ||||||||||| |
|
|
| T |
35063248 |
agaataggtaatgtattgtcaaaactttttcatttttgttggttttgctgatagtttcgtttttcat |
35063314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 116 - 274
Target Start/End: Complemental strand, 39649825 - 39649667
Alignment:
| Q |
116 |
caaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagcatcaaagaa |
215 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
39649825 |
caaaaactccaaaagtgcaaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaacaaatttctacgctcatcaagcatcaaagaa |
39649726 |
T |
|
| Q |
216 |
caggtgatgtaccgtcaaaactctttcatttttgctggttttgctggtagtatcgtttt |
274 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39649725 |
taggtaatgtaccatcaaaactctttcatttttgctggttttgctggtagtatcgtttt |
39649667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 35995225 - 35995457
Alignment:
| Q |
15 |
ttaagtcacgtagcgcatgttaacttgcgttaaatactattttcgtttaaaatccagcaggcaaccacaaagctccannnnnnnnnctttccctccacct |
114 |
Q |
| |
|
|||||| | |||||||||||||||| ||| ||||||||||||| |||| ||||||||||| || ||||||||| |||||||||||||| |
|
|
| T |
35995225 |
ttaagttatgtagcgcatgttaactcatgttgtgtactattttcgttcaaaacccagcaggcaatcataaagctccatttttt---ctttccctccacct |
35995321 |
T |
|
| Q |
115 |
ccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagcatcaaaga |
214 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||| | | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35995322 |
ccaaaaaccccaaaagtgtgaatttttgggtaaaattttttattccaaatcattgcaaatcgtcaggaaacaagtttctacgctcatcaagcatcaaaga |
35995421 |
T |
|
| Q |
215 |
acaggtgatgtaccgtcaaaactctttcatttttgc |
250 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||| |
|
|
| T |
35995422 |
acaggtaatgtaccgtcaaaactttttcatttttgc |
35995457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 101 - 212
Target Start/End: Original strand, 54335658 - 54335769
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||| || |||||||| |||||| |||| ||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
54335658 |
ctttccctccaccttcaaaaacccaaaaagtgcaaatttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttctacgctca |
54335757 |
T |
|
| Q |
201 |
tcaagcatcaaa |
212 |
Q |
| |
|
||||||| |||| |
|
|
| T |
54335758 |
tcaagcaccaaa |
54335769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 102 - 207
Target Start/End: Original strand, 11916935 - 11917040
Alignment:
| Q |
102 |
tttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcat |
201 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||| |||||||| |||||| |||| ||||||| ||||||||||||||||| |||||||| |||||||| |
|
|
| T |
11916935 |
tttccctccaccttcaaaaacccaaaaagtgcgaatttttgggtcaaaatcctcatcccaaatctttgcaaatcgtcaggaagcaagtttctacgctcat |
11917034 |
T |
|
| Q |
202 |
caagca |
207 |
Q |
| |
|
|||||| |
|
|
| T |
11917035 |
caagca |
11917040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 101 - 238
Target Start/End: Complemental strand, 30933930 - 30933793
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||| | |||||||| |||||| |||| ||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
30933930 |
ctttccctccaccttcaaaaacccaaaaagtgcaattttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttctacgctca |
30933831 |
T |
|
| Q |
201 |
tcaagcatcaaagaacaggtgatgtaccgtcaaaactc |
238 |
Q |
| |
|
||||||| |||| | ||||| |||| | ||||||||| |
|
|
| T |
30933830 |
tcaagcaccaaatatcaggtattgtatcatcaaaactc |
30933793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 101 - 220
Target Start/End: Complemental strand, 14443855 - 14443736
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||| ||| |||||| |||| ||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
14443855 |
ctttccctccacctccaaaaacccaaaaagtgcgattttttcggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagtaagtttctacgctca |
14443756 |
T |
|
| Q |
201 |
tcaagcatcaaagaacaggt |
220 |
Q |
| |
|
||||||| ||| || ||||| |
|
|
| T |
14443755 |
tcaagcaccaatgatcaggt |
14443736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 101 - 238
Target Start/End: Complemental strand, 20518184 - 20518047
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| |||||||| |||||| |||| ||||| ||||| ||||||||| ||| |||||||| ||||||| |
|
|
| T |
20518184 |
ctttccctccaccttcaaaaacccaaaaagtgcgaatttttgggtcaaaatcctcatcccaaagcattgtaaatcgtcatgaagcaagtttctacgctca |
20518085 |
T |
|
| Q |
201 |
tcaagcatcaaagaacaggtgatgtaccgtcaaaactc |
238 |
Q |
| |
|
||||||| |||| | ||||| |||| | ||||||||| |
|
|
| T |
20518084 |
tcaagcaccaaatatcaggtattgtatcatcaaaactc |
20518047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 101 - 212
Target Start/End: Original strand, 30528501 - 30528612
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||| | |||||| |||||| ||||||||||||||||||||||| |||||||| | |||| |
|
|
| T |
30528501 |
ctttccctccacctccaaaaacccaaaaagtgcgattttttggatcaaaatcttcattctaaatcattgcaaatcgtcaggaagcaagtttctatactca |
30528600 |
T |
|
| Q |
201 |
tcaagcatcaaa |
212 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
30528601 |
tcaaacatcaaa |
30528612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 101 - 212
Target Start/End: Original strand, 53767228 - 53767339
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| | |||||||| ||||| |||| ||||||||||||||||||||| ||| |||||||| ||||||| |
|
|
| T |
53767228 |
ctttccctccaccttcaaaaacccaaaaagtgtaattttttgggtcaaaattctcatcccaaatcattgcaaatcgtcatgaagcaagtttctacgctca |
53767327 |
T |
|
| Q |
201 |
tcaagcatcaaa |
212 |
Q |
| |
|
||||||| |||| |
|
|
| T |
53767328 |
tcaagcaccaaa |
53767339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 15041945 - 15041875
Alignment:
| Q |
15 |
ttaagtcacgtagcgcatgttaacttgcgttaaatactattttcgtttaaaatccagcaggcaaccacaaa |
85 |
Q |
| |
|
||||||||| ||| | ||||||||||||||||| ||||||||||||| |||| ||||||||||||| |||| |
|
|
| T |
15041945 |
ttaagtcacatagtgtatgttaacttgcgttaagtactattttcgttcaaaacccagcaggcaaccgcaaa |
15041875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 44
Target Start/End: Original strand, 39649867 - 39649898
Alignment:
| Q |
13 |
acttaagtcacgtagcgcatgttaacttgcgt |
44 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
39649867 |
acttaagtcacgtagcgcatgttaacttgcgt |
39649898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 161; Significance: 7e-86; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 15 - 278
Target Start/End: Complemental strand, 30491734 - 30491473
Alignment:
| Q |
15 |
ttaagtcacgtagcgcatgttaacttgcgttaaatactattttcgtttaaaatccagcaggcaaccacaaagctccannnnnnnnnctttccctccacct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30491734 |
ttaagtcacgtagcgcatgttaacttgcgtcaagtactattttcgttcaaaacccagcaggcaaccacaaagctccatttttt---ctttccctccacct |
30491638 |
T |
|
| Q |
115 |
ccaaaaacccc-aaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagcatcaaag |
213 |
Q |
| |
|
||||||||||| ||||||||||||||||| || |||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
30491637 |
ccaaaaacccccaaaagtgcgaaattttgagtcaaaatcttcattccaaatcattgcaaatcgtcaggagacaagtttctacgctcatcaagcatcaaag |
30491538 |
T |
|
| Q |
214 |
aacaggtgatgtaccgtcaaaactctttcatttttgctggttttgctggtagtatcgtttttcat |
278 |
Q |
| |
|
||||||| |||||| |||||||| |||| |||||||||| |||||||||||| ||||||||||| |
|
|
| T |
30491537 |
aacaggtaatgtacaatcaaaactttttcctttttgctgggtttgctggtagtttcgtttttcat |
30491473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 28 - 274
Target Start/End: Complemental strand, 763309 - 763067
Alignment:
| Q |
28 |
cgcatgttaacttgcgttaaatactattttcgtttaaaatccagcaggcaaccacaaagctccannnnnnnnnctttccctccacctccaaaaaccccaa |
127 |
Q |
| |
|
|||| |||||||||| | | ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| || || |
|
|
| T |
763309 |
cgcaagttaacttgcataatgtactattttcgttcaaaatccagcaggcaaccacaaagctccatttttt---ctttccctccaccttcaaaattcc-aa |
763214 |
T |
|
| Q |
128 |
aagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagcatcaaagaacaggtgatgtac |
227 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||| |||| ||||| |
|
|
| T |
763213 |
aagtgcgaaattttggataaaaatcttcattccaaatcattgcaaatcgttaggaaacaaatttctacgctcatcaagcatcaaagaataggtaatgtag |
763114 |
T |
|
| Q |
228 |
cgtcaaaactctttcatttttgctggttttgctggtagtatcgtttt |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
763113 |
cgtcaaaactctttcatttttgctggttttgctggtagtatcgtttt |
763067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 15 - 278
Target Start/End: Original strand, 5504856 - 5505110
Alignment:
| Q |
15 |
ttaagtcacgtagcgcatgttaacttgcgttaaatactattttcgtttaaaatccagcaggcaaccacaaagctccannnnnnnnnctttccctccacct |
114 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||| |||| |||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
5504856 |
ttaagtcacgtagcgcatgttaacatgcattaaatactattttcgttcaaaacccagcaaacaaccacaaagctccattttt-----tttccctccacct |
5504950 |
T |
|
| Q |
115 |
ccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagcatcaaaga |
214 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||| |||| ||||||||||||||||||| ||||| ||||| |||||||||||| |||||||| |
|
|
| T |
5504951 |
ccaaaaactccaaaagtgcaaaattttgggtaaaaatcttcat----aatcattgcaaatcgtcagaaaacaggtttctacgctcatcaagaatcaaaga |
5505046 |
T |
|
| Q |
215 |
acaggtgatgtaccgtcaaaactctttcatttttgctggttttgctggtagtatcgtttttcat |
278 |
Q |
| |
|
|||||| ||||||| |||||||| ||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
5505047 |
acaggtaatgtaccatcaaaacttattcatttttgctggttttgttggtagtttcgtttttcat |
5505110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 101 - 254
Target Start/End: Complemental strand, 34017534 - 34017381
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
||||| ||||||||||||||| |||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34017534 |
ctttcactccacctccaaaaattccaaaagtgcaaaattttgggtaaaaatcttcatttcaaatcattgcaaatcgtcaggaaacaagtttctacgctca |
34017435 |
T |
|
| Q |
201 |
tcaagcatcaaagaacaggtgatgtaccgtcaaaactctttcatttttgctggt |
254 |
Q |
| |
|
||||||||||||||||| || ||||| |||||||||| |||||||||||||||| |
|
|
| T |
34017434 |
tcaagcatcaaagaacatgtaatgtatcgtcaaaactttttcatttttgctggt |
34017381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 101 - 234
Target Start/End: Original strand, 38739558 - 38739690
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||| |||||||| |||||| |||||| |||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
38739558 |
ctttccctccacctccaaaaacccaaaaagtgagaatttttgggtcaaaatcttcattctaaatcattgcaaatcgtcaggaaacaag-ttctacgctca |
38739656 |
T |
|
| Q |
201 |
tcaagcatcaaagaacaggtgatgtaccgtcaaa |
234 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
38739657 |
tcaagcatcaaagaacaggtaatgtaccgtcaaa |
38739690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 33144125 - 33143948
Alignment:
| Q |
13 |
acttaagtcacgtagcgcatgttaacttgcgttaaatactattttcgtttaaaatccagcaggcaaccacaaagctccannnnnnnnnctttccctccac |
112 |
Q |
| |
|
||||||||||||||| |||||||||| |||| ||| ||| ||||| ||| |||| ||||||| |||||||||| ||||| |||||||||||| |
|
|
| T |
33144125 |
acttaagtcacgtagggcatgttaacatgcgctaagtacaattttggttcaaaacccagcagacaaccacaaaactccattttttt--ctttccctccac |
33144028 |
T |
|
| Q |
113 |
ctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttc |
192 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33144027 |
ctccaaaacccccaaaaatgcgaaattttgggtgaaaatcttcattccaaatcattgcaaatcgtcagaaaacaagtttc |
33143948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 32910589 - 32910726
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| |||||||| ||||| |||| ||||| ||||||||||||||| ||| |||||||| || |||| |
|
|
| T |
32910589 |
ctttccctccaccttcaaaaacccaaaaagtgcgaatttttgggtcaaaattctcatcccaaaccattgcaaatcgtcatgaagcaagtttctacactca |
32910688 |
T |
|
| Q |
201 |
tcaagcatcaaagaacaggtgatgtaccgtcaaaactc |
238 |
Q |
| |
|
||||||| |||| | ||||| |||| | ||||||||| |
|
|
| T |
32910689 |
tcaagcaccaaatatcaggtattgtatcatcaaaactc |
32910726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 101 - 212
Target Start/End: Complemental strand, 29195962 - 29195851
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||| | |||| ||| || ||| |||| |||||||||||||||||||||| || |||||||| ||||||| |
|
|
| T |
29195962 |
ctttccctccaccttcaaaaacccaaaaagtgcaattttttaggtcaatatcctcatcccaaatcattgcaaatcgtcagaaagcaagtttctacgctca |
29195863 |
T |
|
| Q |
201 |
tcaagcatcaaa |
212 |
Q |
| |
|
||||||| |||| |
|
|
| T |
29195862 |
tcaagcaccaaa |
29195851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 101 - 212
Target Start/End: Complemental strand, 20887802 - 20887691
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
|||||||| ||||| ||||||||| ||||||| || ||||| || |||||| |||| ||||||||||||||||||||||||| ||||||| ||||| | |
|
|
| T |
20887802 |
ctttccctacaccttcaaaaacccaaaaagtgggattttttgagtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagaaagtttctacgctta |
20887703 |
T |
|
| Q |
201 |
tcaagcatcaaa |
212 |
Q |
| |
|
||||||| |||| |
|
|
| T |
20887702 |
tcaagcaccaaa |
20887691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 182
Target Start/End: Original strand, 16109323 - 16109403
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcagga |
182 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||| |||||| ||||||||||| |||| |||||||||||| |
|
|
| T |
16109323 |
ctttccctccacctccaaaaacccaaaaagtgcgattttttgggtcaaaatcttcattccaaattattg-aaatcgtcagga |
16109403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 111 - 212
Target Start/End: Complemental strand, 15235165 - 15235063
Alignment:
| Q |
111 |
acctccaaaaaccccaaaagtgcgaaatttt-gggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagcatc |
209 |
Q |
| |
|
|||||||||||||| |||||||| | |||| |||| |||||| ||||||||||||||||||||||||||| || |||||| || ||||||||||||| |
|
|
| T |
15235165 |
acctccaaaaacccaaaaagtgcaatttttttgggtcaaaatcttcattccaaatcattgcaaatcgtcagaaagcaagttcatacactcatcaagcatc |
15235066 |
T |
|
| Q |
210 |
aaa |
212 |
Q |
| |
|
||| |
|
|
| T |
15235065 |
aaa |
15235063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 8736538 - 8736462
Alignment:
| Q |
107 |
ctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaa |
183 |
Q |
| |
|
|||||||||||||||||| |||||||| || ||||| | |||||| ||||| |||||||||||||||| ||||||| |
|
|
| T |
8736538 |
ctccacctccaaaaacccaaaaagtgcaaatttttgaatcaaaatcttcatttcaaatcattgcaaatcatcaggaa |
8736462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 35050386 - 35050308
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtca |
179 |
Q |
| |
|
|||||||||||||| |||||| |||||| ||| |||||||| |||||| |||| ||||||||||||||||||||| |
|
|
| T |
35050386 |
ctttccctccaccttcaaaaataaaaaaagtacgattttttgggtcaaaatcctcatcccaaatcattgcaaatcgtca |
35050308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 34017611 - 34017559
Alignment:
| Q |
13 |
acttaagtcacgtagcgcatgttaact----tgcgttaaatactattttcgtt |
61 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
34017611 |
acttaagtcacgtagcgcatgttaacttgcatgcgttaaatactatttttgtt |
34017559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1063 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: scaffold1063
Description:
Target: scaffold1063; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 15 - 278
Target Start/End: Original strand, 1563 - 1824
Alignment:
| Q |
15 |
ttaagtcacgtagcgcatgttaacttgcgttaaatactattttcgtttaaaatccagcaggcaaccacaaagctccannnnnnnnnctttccctccacct |
114 |
Q |
| |
|
|||||||| |||||||||||||||| |||| ||| ||||||||| ||||||| |||||||||| ||||||||| |||||||||||||| |
|
|
| T |
1563 |
ttaagtcatgtagcgcatgttaactcatgttaggtacaattttcgttcaaaatccgccaggcaaccataaagctccattttttt--ctttccctccacct |
1660 |
T |
|
| Q |
115 |
ccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagcatcaaaga |
214 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
1661 |
ccaaaaaccccaaaagtgcgaatttttgggcaaaaatctttattccaaatcattgcaaatcgtcaggaaacaagtttctacgctcatcaagcatcgaaga |
1760 |
T |
|
| Q |
215 |
acaggtgatgtaccgtcaaaactctttcatttttgctggttttgctggtagtatcgtttttcat |
278 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1761 |
acatgtaatgtaccgtcaaaactctttcatttttgctggttttgctggtagtttcgtttttcat |
1824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 151; Significance: 6e-80; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 24 - 278
Target Start/End: Complemental strand, 8277392 - 8277141
Alignment:
| Q |
24 |
gtagcgcatgttaacttgcgttaaatactattttcgtttaaaatccagcaggcaaccacaaagctccannnnnnnnnctttccctccacctccaaaaacc |
123 |
Q |
| |
|
||||||||||||||||||||| || |||||||| ||| |||| |||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8277392 |
gtagcgcatgttaacttgcgtcaagcactatttttgttcaaaacccagtaggcaaccacaaagctccatttttt---ctttccctccacctccaaaaacc |
8277296 |
T |
|
| Q |
124 |
ccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagcatcaaagaacaggtgat |
223 |
Q |
| |
|
||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| || |
|
|
| T |
8277295 |
tcaaaaatgcaaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaacaagtttctacgctcatcaagtatcaaagaacaggtaat |
8277196 |
T |
|
| Q |
224 |
gtaccgtcaaaactctttcatttttgctggttttgctggtagtatcgtttttcat |
278 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
8277195 |
gtatcgtcaaaactttttcatttttgctggttttgctagtagtttcgtttttcat |
8277141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 11573772 - 11574015
Alignment:
| Q |
15 |
ttaagtcacgtagcgcatgttaacttgcgttaaatactattttcgtttaaaatccagcaggcaaccacaaagctccannnnnnnnnctttccctccacct |
114 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || |||||||||| |||| ||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
11573772 |
ttaagtcacgtagcgcatgttaacttgtgttaagtattattttcgttcaaaacccagcagacaaccacaaagctccatttttt---ctttccctccacct |
11573868 |
T |
|
| Q |
115 |
ccaaaaaccccaaaagtgc-------gaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagca |
207 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
11573869 |
ccaaaaaccccaaaagtgcgatgtgcgaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaacaagtttctatgctcatcaagca |
11573968 |
T |
|
| Q |
208 |
tcaaagaacaggtgatgtaccgtcaaaactctttcatttttgctggt |
254 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
11573969 |
tcaaagaacaggtaatgtaccgtcaaaactttttcatttttgctggt |
11574015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 104 - 255
Target Start/End: Original strand, 31133335 - 31133486
Alignment:
| Q |
104 |
tccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatca |
203 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||| |||||||| |||||| ||||||||||| |||||||||||| | ||||||||||| | | |||||| |
|
|
| T |
31133335 |
tccctccacctccaaaaacccaaaaagtgagaatttttgggtcaaaatcttcattccaaattattgcaaatcgttataaaacaagtttctatgttcatca |
31133434 |
T |
|
| Q |
204 |
agcatcaaagaacaggtgatgtaccgtcaaaactctttcatttttgctggtt |
255 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||| |||||||||||| |
|
|
| T |
31133435 |
agcatcaaagaacaggtaatgtaccgtcaaaactcattcgtttttgctggtt |
31133486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 101 - 226
Target Start/End: Complemental strand, 20927640 - 20927515
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||| ||||||| ||| |||||| |||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
20927640 |
ctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctacgctca |
20927541 |
T |
|
| Q |
201 |
tcaagcatcaaagaacaggtgatgta |
226 |
Q |
| |
|
|||||||||||| | ||||| ||||| |
|
|
| T |
20927540 |
tcaagcatcaaatatcaggtaatgta |
20927515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 101 - 225
Target Start/End: Complemental strand, 22787910 - 22787786
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||| |||||| |||||| ||||||||||||||||||| ||| ||||||| ||||||| |
|
|
| T |
22787910 |
ctttccctccacctccaaaaacccataaagtgcgaatttttgggtcaaaatcttcattctaaatcattgcaaatcgtcatgaagtaagtttctacgctca |
22787811 |
T |
|
| Q |
201 |
tcaagcatcaaagaacaggtgatgt |
225 |
Q |
| |
|
|||||||||| |||| |||| |||| |
|
|
| T |
22787810 |
tcaagcatcatagaataggttatgt |
22787786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 101 - 212
Target Start/End: Complemental strand, 9829479 - 9829368
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
|||||||||||||| ||||||| | ||||||||||| |||||||| |||||| |||| ||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
9829479 |
ctttccctccaccttcaaaaactcaaaaagtgcgaatttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttctacgctca |
9829380 |
T |
|
| Q |
201 |
tcaagcatcaaa |
212 |
Q |
| |
|
||||||| |||| |
|
|
| T |
9829379 |
tcaagcaccaaa |
9829368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 101 - 226
Target Start/End: Original strand, 35000448 - 35000573
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
|||||| |||||||| |||||||| ||||||||||| |||||||| |||||| || |||||||||||||||||||| |||||| ||||| | || |||| |
|
|
| T |
35000448 |
ctttccttccacctctaaaaacccaaaaagtgcgaacttttgggtcaaaatcttcgttccaaatcattgcaaatcgccaggaagcaagtctatacactca |
35000547 |
T |
|
| Q |
201 |
tcaagcatcaaagaacaggtgatgta |
226 |
Q |
| |
|
|||||||||||||||||||| ||||| |
|
|
| T |
35000548 |
tcaagcatcaaagaacaggtaatgta |
35000573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 49 - 275
Target Start/End: Complemental strand, 38292 - 38071
Alignment:
| Q |
49 |
tactattttcgtttaaaatccagcaggcaaccacaaagctccannnnnnnnnctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaa |
148 |
Q |
| |
|
||||||||||||| ||||||||| | ||||||||| ||||||| ||||||||||||||||||||| || |||||||| || ||||||||||| |
|
|
| T |
38292 |
tactattttcgttcaaaatccagtatgcaaccacacagctccattttt----ctttccctccacctccaaaaagccaaaaagtgcaaatttttgggtaaa |
38197 |
T |
|
| Q |
149 |
aatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagcatcaaagaacaggtgatgtaccgtcaaaactctttcattttt |
248 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||| |||||||||| ||| ||||| |
|
|
| T |
38196 |
aatcttcattccaaatcattgcaaatcgtcaggaaacaagtttctacgctcatcaagcatcaaagaacatataatgtacagtcaaaactc-ttccttttt |
38098 |
T |
|
| Q |
249 |
gctggttttgctggtagtatcgttttt |
275 |
Q |
| |
|
||||||||| |||||||| ||||||| |
|
|
| T |
38097 |
gctggtttttctggtagttacgttttt |
38071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 101 - 238
Target Start/End: Complemental strand, 2369793 - 2369656
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
||||||||||||||| |||||||| ||||||| ||| |||||||| |||||| |||||||||||||||||||||||||| ||| |||||||| || |||| |
|
|
| T |
2369793 |
ctttccctccacctctaaaaacccaaaaagtgtgaatttttgggtcaaaatcttcattccaaatcattgcaaatcgtcatgaagcaagtttctacactca |
2369694 |
T |
|
| Q |
201 |
tcaagcatcaaagaacaggtgatgtaccgtcaaaactc |
238 |
Q |
| |
|
|||||||||||||||||||| ||||| | ||||||||| |
|
|
| T |
2369693 |
tcaagcatcaaagaacaggtaatgtatcctcaaaactc |
2369656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 101 - 237
Target Start/End: Original strand, 44222013 - 44222149
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||| |||||||| |||||| |||| ||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
44222013 |
ctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttctacgctca |
44222112 |
T |
|
| Q |
201 |
tcaagcatcaaagaacaggtgatgtaccgtcaaaact |
237 |
Q |
| |
|
|||||||||||| | ||||| |||| | |||||||| |
|
|
| T |
44222113 |
tcaagcatcaaatatcaggtattgtatcatcaaaact |
44222149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 101 - 220
Target Start/End: Complemental strand, 4452517 - 4452398
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||| |||||||| |||||| ||||||||||| |||||||||| ||||||| |||||||| || ||| |
|
|
| T |
4452517 |
ctttccctccatctccaaaaacccaaaaagtgcgaatttttgggtcaaaatcttcattccaaataattgcaaatcatcaggaagcaagtttctacattca |
4452418 |
T |
|
| Q |
201 |
tcaagcatcaaagaacaggt |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4452417 |
tcaagcatcaaagaacaggt |
4452398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 23941347 - 23941484
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| |||| ||| |||||| |||| ||||||||||||||||||||| ||| |||||||| ||||||| |
|
|
| T |
23941347 |
ctttccctccaccttcaaaaacccaaaaagtgcgaattttttggtcaaaatcctcatcccaaatcattgcaaatcgtcatgaagcaagtttctacgctca |
23941446 |
T |
|
| Q |
201 |
tcaagcatcaaagaacaggtgatgtaccgtcaaaactc |
238 |
Q |
| |
|
||||||| |||| | ||||| |||| | ||||||||| |
|
|
| T |
23941447 |
tcaagcaccaaatatcaggtattgtatcatcaaaactc |
23941484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 11356343 - 11356480
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctca |
200 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| ||||||| |||||||| ||| ||| |
|
|
| T |
11356343 |
ctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaattctcatcccaaatcattgcaaatcatcaggaagcaagtttctacgttca |
11356442 |
T |
|
| Q |
201 |
tcaagcatcaaagaacaggtgatgtaccgtcaaaactc |
238 |
Q |
| |
|
||||||| |||| | ||||| |||| | ||||||||| |
|
|
| T |
11356443 |
tcaagcaccaaatatcaggtattgtatcatcaaaactc |
11356480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 101 - 212
Target Start/End: Original strand, 4278606 - 4278718
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaa-caagtttccacgctc |
199 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||| |||| ||| |||||| |||| ||||||||||||| |||||||||||| ||||||| |||||| |
|
|
| T |
4278606 |
ctttccctccaccttcaaaaaccccaaaagtgagaattttttggtcaaaatcctcatcccaaatcattgcacatcgtcaggaaagtaagtttctacgctc |
4278705 |
T |
|
| Q |
200 |
atcaagcatcaaa |
212 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
4278706 |
atcaagcaccaaa |
4278718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 183
Target Start/End: Complemental strand, 4452839 - 4452757
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaa |
183 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || |||||||| |||||| ||||||||||| |||||||||| ||||||| |
|
|
| T |
4452839 |
ctttccctccacctccaaaaacctaaaaagtgcaaatttttgggtcaaaatcttcattccaaataattgcaaatcatcaggaa |
4452757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 210
Target Start/End: Original strand, 31730919 - 31731021
Alignment:
| Q |
107 |
ctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagc |
206 |
Q |
| |
|
|||||||||||||||||| || |||||||| || ||||| || ||| ||||| || ||||||||||||||||||||| |||||||| || |||||||| | |
|
|
| T |
31730919 |
ctccacctccaaaaacccaaagagtgcgaa-ttgtgggtcaatatcttcatttcatatcattgcaaatcgtcaggaagcaagtttctacactcatcaaac |
31731017 |
T |
|
| Q |
207 |
atca |
210 |
Q |
| |
|
|||| |
|
|
| T |
31731018 |
atca |
31731021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 167
Target Start/End: Complemental strand, 13070575 - 13070509
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcat |
167 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || |||||||| |||||| |||||||||||||| |
|
|
| T |
13070575 |
ctttccctccacctccaaaaacccaaaaagtgtgattttttgggtcaaaatcttcattccaaatcat |
13070509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 208
Target Start/End: Original strand, 12868627 - 12868725
Alignment:
| Q |
110 |
cacctccaaaaaccccaaaagtgcgaaattttg-ggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcatcaagcat |
208 |
Q |
| |
|
||||||||||||||| |||||||| || |||| ||| |||||| ||||| ||||||||| |||||||| ||||| ||||||| || |||||||||||| |
|
|
| T |
12868627 |
cacctccaaaaaccc-aaaagtgcaaatttttttggtcaaaatcttcatttcaaatcattacaaatcgtgaggaagtaagtttctacactcatcaagcat |
12868725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 10526940 - 10526860
Alignment:
| Q |
49 |
tactattttcgtttaaaatccagcaggcaaccacaaagctccannnnnnnnnctttccctccacctccaaaaaccccaaaagtg |
132 |
Q |
| |
|
||||||||||| | |||| |||||||||||||||||||||||| ||||||||||||||||||||| || ||||||| |
|
|
| T |
10526940 |
tactattttcgatcaaaacccagcaggcaaccacaaagctcca---ttttttctttccctccacctccaaaaatccaaaaagtg |
10526860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0599 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0599
Description:
Target: scaffold0599; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 102 - 207
Target Start/End: Original strand, 8686 - 8791
Alignment:
| Q |
102 |
tttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctcat |
201 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||| |||||||| |||||| |||| ||||||| ||||||||||||||||| |||||||| |||||||| |
|
|
| T |
8686 |
tttccctccaccttcaaaaacccaaaaagtgcgaatttttgggtcaaaatcctcatcccaaatctttgcaaatcgtcaggaagcaagtttctacgctcat |
8785 |
T |
|
| Q |
202 |
caagca |
207 |
Q |
| |
|
|||||| |
|
|
| T |
8786 |
caagca |
8791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1050 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold1050
Description:
Target: scaffold1050; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 199
Target Start/End: Original strand, 2065 - 2163
Alignment:
| Q |
101 |
ctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcatcattccaaatcattgcaaatcgtcaggaaacaagtttccacgctc |
199 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||| |||||||||||||| |||| ||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
2065 |
ctttccctccacctttaaaaacccaaaaagtgcgattttttgggtaaaaatgctcatcttaaatcattgcaaatcgtcaggaagcaagtttctacgctc |
2163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 24304 - 24258
Alignment:
| Q |
15 |
ttaagtcacgtagcgcatgttaacttgcgttaaatactattttcgtt |
61 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| | ||||||||||| |
|
|
| T |
24304 |
ttaagtcacgtggcgcatgttaacttgcgttaagtgctattttcgtt |
24258 |
T |
|
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