View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4867_high_6 (Length: 251)
Name: NF4867_high_6
Description: NF4867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4867_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 51418649 - 51418409
Alignment:
| Q |
1 |
cacgcgcctcccttcatttctggttccataatacaccctcatttgccggcgactgcgttctgcaaccggagataatagcttcctcctactactgtttaca |
100 |
Q |
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| T |
51418649 |
cacgcgcctcccttcatttctggttccataatacaccctcatttgccggcgactgcgttctgccaccggagataatagcttcctcctactactgtttgca |
51418550 |
T |
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| Q |
101 |
ccacgagagagacgcggtggactgctgctacagctgaactgatactccaacggtgaaatgaaatacatatcagcatcacgtggtcggcacgtgagtgctt |
200 |
Q |
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| T |
51418549 |
ccacgagagagacgcggtggactgctgctacagctgaactgatactccaacggtgaaataaaatacatatcagcatcacgtggacggcacgtgagtgctt |
51418450 |
T |
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| Q |
201 |
catggtgcttcaccatcacgttgttcaatgctttccctatg |
241 |
Q |
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| T |
51418449 |
catggtgcttcaccatcacgttgttcagtgctttccctatg |
51418409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 66 - 241
Target Start/End: Complemental strand, 51413534 - 51413356
Alignment:
| Q |
66 |
ccggagataatagcttcctcctactactgtttacaccac---gagagagacgcggtggactgctgctacagctgaactgatactccaacggtgaaatgaa |
162 |
Q |
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| T |
51413534 |
ccggagacaaaagcttcctcctactactgctggcgccaccgcgagagagacgaggtggactgctactacagctgaactgatactccaacggtgaaatgaa |
51413435 |
T |
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| Q |
163 |
atacatatcagcatcacgtggtcggcacgtgagtgcttcatggtgcttcaccatcacgttgttcaatgctttccctatg |
241 |
Q |
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| T |
51413434 |
atacatatcagcatcacgtggtcggcacgtgagtgcttcatggtgcttcaccatcacgctgttcaatgctttccctatg |
51413356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 66 - 171
Target Start/End: Complemental strand, 51416581 - 51416472
Alignment:
| Q |
66 |
ccggagataatagcttcctcctactactgtttacacca----cgagagagacgcggtggactgctgctacagctgaactgatactccaacggtgaaatga |
161 |
Q |
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|||||||||||||||| |||||||| ||| || ||||| |||| |||| |||||||| |||||||||||||||||||||| ||||||||||||| || |
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| T |
51416581 |
ccggagataatagctttctcctactgctgcttgcaccatgcacgagtgagatgcggtggattgctgctacagctgaactgatattccaacggtgaaacga |
51416482 |
T |
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| Q |
162 |
aatacatatc |
171 |
Q |
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| T |
51416481 |
aatacatatc |
51416472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 29323760 - 29323690
Alignment:
| Q |
140 |
tgatactccaacggtgaaatgaaatacatatcagcatcacgtggtcggcacgtgagtgcttcatggtgctt |
210 |
Q |
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| T |
29323760 |
tgatactccaacggtgaaacgaaatacatatcagcatcacgtggacggcacatgagtgcttcgtggtgctt |
29323690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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