View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4867_low_1 (Length: 419)
Name: NF4867_low_1
Description: NF4867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4867_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 9555523 - 9555120
Alignment:
| Q |
1 |
acttccaactccaaatcacaaccnnnnnnnctcactcttctccttaacacatccttcctcttcatcctgnnnnnnnccatcaaactttatatcaatcctt |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9555523 |
acttccaactccaaatcacaaccaaaaaaactcactcttctcctcaacacatccttcctcttcatcctgtttttttccatcaaactttatatcaatcctt |
9555424 |
T |
|
| Q |
101 |
ccaattctaattctgattttcatcatgtttcctcaaaactcttcaaccatgctagaattctcactagtgacatcctagttgattcatgctcagaacttca |
200 |
Q |
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| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9555423 |
caaattctaattctcattttcatcatgtttcctcaaaactcttcaaccatgctagaattctcactagtgacatcctagttgattcatgctcagaacttca |
9555324 |
T |
|
| Q |
201 |
caattactcaaattacacttctaagtgtatttatgtcaaaacacattctgattgtagatcaaaaggttacataaactatctccaaatcttttattgcaac |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9555323 |
caattactcaaattacacttctaagtgtatttatgtcaaaacacattctgattgtagatcaaaaggttacataaactatcttcaaatcttttattgcaac |
9555224 |
T |
|
| Q |
301 |
cttggaagttcaccaattcttggtcacacactacttgttttatggctagtagttttattctatcttttagccgacacagcttcaaattacttttgcacat |
400 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9555223 |
cttggaaattcaccaattcttggtcacacactacttgttttatggctagtagttttattctatcttttagccgacacagcttcaaattacttttgcacat |
9555124 |
T |
|
| Q |
401 |
ctct |
404 |
Q |
| |
|
|||| |
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|
| T |
9555123 |
ctct |
9555120 |
T |
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