View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4867_low_11 (Length: 243)
Name: NF4867_low_11
Description: NF4867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4867_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 36085877 - 36086096
Alignment:
| Q |
18 |
acatataacatcatgcaaaagatataatatttccaggaatcagtcatcaaagttataataagaaacacaaagttcaaaccaatgatcataataaaaaaga |
117 |
Q |
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| T |
36085877 |
acatataacatcatgcaaaagatataatatttccaggaatcagtcatcaaagttataataagaaacacaaagttcaaaccaatgatcataataaaaaaga |
36085976 |
T |
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| Q |
118 |
gagacataaacaatccgaaacaacagaagaacctacctgcatgatcaagctcacgtaaaatccactcaccacaagagatctcattgaaacagaatgttcc |
217 |
Q |
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| T |
36085977 |
gagacataaacaatccgaaacaacagaagaacctacctgcatgatcaagctcacgtaaaatccactcaccacaagagatctcattgaaacagaatgttcc |
36086076 |
T |
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| Q |
218 |
ttagaagtaagaataatcta |
237 |
Q |
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| T |
36086077 |
ttagaagtaagaagaatcta |
36086096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 48393077 - 48393017
Alignment:
| Q |
176 |
aatccactcaccacaagagatctcattgaaacagaatgttccttagaagtaagaataatct |
236 |
Q |
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|||| ||||||| |||| |||||||| ||||| |||| |||||||||||||||| ||||| |
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| T |
48393077 |
aatcaactcaccccaagcgatctcatggaaacggaatcctccttagaagtaagaagaatct |
48393017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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