View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4867_low_14 (Length: 234)

Name: NF4867_low_14
Description: NF4867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4867_low_14
NF4867_low_14
[»] chr4 (2 HSPs)
chr4 (18-218)||(6612767-6612967)
chr4 (76-217)||(27014988-27015129)
[»] scaffold0381 (1 HSPs)
scaffold0381 (76-217)||(4654-4795)
[»] chr3 (1 HSPs)
chr3 (83-185)||(54565450-54565552)
[»] chr8 (1 HSPs)
chr8 (43-209)||(29383189-29383355)
[»] chr2 (1 HSPs)
chr2 (20-215)||(45010032-45010227)
[»] chr5 (1 HSPs)
chr5 (91-212)||(22789992-22790113)
[»] chr6 (3 HSPs)
chr6 (147-215)||(20916444-20916512)
chr6 (147-215)||(20916800-20916868)
chr6 (125-188)||(17395936-17395999)
[»] chr1 (2 HSPs)
chr1 (147-215)||(41327628-41327696)
chr1 (147-215)||(41337859-41337927)


Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 6612967 - 6612767
Alignment:
Q  18 atgaacagaatcaaaaaattcaactgtaatatgattattagaataattaacaagcgtgcaattagaagaggtacgccaaaataaagcaaggccaccactc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6612967 atgaacagaatcaaaaaattcaactgtaatatgattattagaataattaacaagcatgcaattagaagaggtacgccaaaataaagcaaggccaccactc 6612868  T
Q  118 ctagcggtgcaatcaacggaaaaacaggaatcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaagaagagta 217  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  6612867 ctaccggtgcaatcaacggaaaaacaggaatcaaaaccaagcaagtaacgtaaaacttcaattttatttcgggatactagtgtctcacttaagaagagta 6612768  T
Q  218 c 218  Q
    |    
T  6612767 c 6612767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 76 - 217
Target Start/End: Original strand, 27014988 - 27015129
Alignment:
Q  76 caattagaagaggtacgccaaaataaagcaaggccaccactcctagcggtgcaatcaacggaaaaacaggaatcaaaaccaagcaagtaacggaaaacgt 175  Q
    ||||||||||| || ||||  ||||||||||| ||||| || |||  |||||||||||| |||||||| ||||||||||| ||||| || || ||||| |    
T  27014988 caattagaagaagtgcgccggaataaagcaagaccaccgcttctattggtgcaatcaacagaaaaacaagaatcaaaaccgagcaaatatcgaaaaactt 27015087  T
Q  176 caattttatttcgtgatactagtgtctcacttaagaagagta 217  Q
    |||||||||||||    || | |||||||||||| |||||||    
T  27015088 caattttatttcggcgaaccaatgtctcacttaaaaagagta 27015129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 76 - 217
Target Start/End: Complemental strand, 4795 - 4654
Alignment:
Q  76 caattagaagaggtacgccaaaataaagcaaggccaccactcctagcggtgcaatcaacggaaaaacaggaatcaaaaccaagcaagtaacggaaaacgt 175  Q
    ||||||||||| || ||||  ||||||||||| ||||| || |||  |||||||||||| |||||||| ||||||||||| ||||| || || ||||| |    
T  4795 caattagaagaagtgcgccggaataaagcaagaccaccgcttctattggtgcaatcaacagaaaaacaagaatcaaaaccgagcaaatatcgaaaaactt 4696  T
Q  176 caattttatttcgtgatactagtgtctcacttaagaagagta 217  Q
    |||||||||||||    || | |||||||||||| |||||||    
T  4695 caattttatttcggcgaaccaatgtctcacttaaaaagagta 4654  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 185
Target Start/End: Original strand, 54565450 - 54565552
Alignment:
Q  83 aagaggtacgccaaaataaagcaaggccaccactcctagcggtgcaatcaacggaaaaacaggaatcaaaaccaagcaagtaacggaaaacgtcaatttt 182  Q
    |||||| |||||||||||| |||||||||||||| ||| | || |||||||| ||||||||  |||||||| |||||| |||||| | | | ||||||||    
T  54565450 aagaggcacgccaaaataatgcaaggccaccacttctaccagtacaatcaacagaaaaacaaaaatcaaaatcaagcacgtaacgtagagcttcaatttt 54565549  T
Q  183 att 185  Q
    |||    
T  54565550 att 54565552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 209
Target Start/End: Complemental strand, 29383355 - 29383189
Alignment:
Q  43 gtaatatgattattagaataattaacaagcgtgcaattagaagaggtacgccaaaataaagcaaggccaccactcctagcggtgcaatcaacggaaaaac 142  Q
    ||||| |||||||||||| ||||||||||    |||| |  ||| || ||||| ||||||||||| || || |  ||| |||||| ||||||  |||| |    
T  29383355 gtaatgtgattattagaaaaattaacaagttgacaatgaagagaagtgcgccacaataaagcaagaccgcctccactaccggtgcgatcaacataaaagc 29383256  T
Q  143 aggaatcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaa 209  Q
    | ||||||||||| ||||| ||||| ||| | ||||||||||||||    |||||||||||||||||    
T  29383255 aagaatcaaaacccagcaaataacgtaaatcttcaattttatttcggtggactagtgtctcacttaa 29383189  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 45010227 - 45010032
Alignment:
Q  20 gaacagaatcaaaaaattcaactgtaatatgattattagaataattaacaagcgtgcaattagaagaggtacgccaaaataaagcaaggccaccactcct 119  Q
    |||||||||||| || |||||| |||||||||||||||||| ||| ||||||  ||||| ||||||    | |||||||||| ||||| || ||||  ||    
T  45010227 gaacagaatcaataatttcaacagtaatatgattattagaaaaatcaacaagattgcaactagaagtatgatgccaaaataaggcaagacccccacctct 45010128  T
Q  120 agcggtgcaatcaacggaaaaacaggaatcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaagaagag 215  Q
      | ||||  ||||| || | ||| |||||||||||||| ||||||   ||  | ||||||||||||||    ||||  |||||||||||||||||    
T  45010127 tccagtgcggtcaactgagatacaagaatcaaaaccaagtaagtaaaataattcttcaattttatttcgatggactaaagtctcacttaagaagag 45010032  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 212
Target Start/End: Original strand, 22789992 - 22790113
Alignment:
Q  91 cgccaaaataaagcaaggccaccactcctagcggtgcaatcaacggaaaaacaggaatcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtg 190  Q
    ||||||||||| |||||||||||||| ||| |    |||||||| ||||| ||  ||||||||||||||| || ||| ||| | ||||||||||| ||      
T  22789992 cgccaaaataatgcaaggccaccacttctaccataacaatcaacagaaaagcatcaatcaaaaccaagcaggtgacgtaaagcttcaattttattacggt 22790091  T
Q  191 atactagtgtctcacttaagaa 212  Q
      |||| |||||||||||||||    
T  22790092 ggactaatgtctcacttaagaa 22790113  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 20916512 - 20916444
Alignment:
Q  147 atcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaagaagag 215  Q
    ||||||||||||||||||||| ||| | ||||||||||||||    |||| | ||||||||||||||||    
T  20916512 atcaaaaccaagcaagtaacgtaaatcttcaattttatttcggtggactaatatctcacttaagaagag 20916444  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 20916868 - 20916800
Alignment:
Q  147 atcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaagaagag 215  Q
    ||||||||||||||||||||| ||| | ||||||||||||||    |||| | ||||||||||||||||    
T  20916868 atcaaaaccaagcaagtaacgtaaatcttcaattttatttcggtggactaatatctcacttaagaagag 20916800  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 17395936 - 17395999
Alignment:
Q  125 tgcaatcaacggaaaaacaggaatcaaaaccaagcaagtaacggaaaacgtcaattttatttcg 188  Q
    |||||||||  |||||||| |||| ||||||||||| || ||| ||||| ||||||||||||||    
T  17395936 tgcaatcaaaagaaaaacaagaataaaaaccaagcatgttacgaaaaacttcaattttatttcg 17395999  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 41327696 - 41327628
Alignment:
Q  147 atcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaagaagag 215  Q
    ||||||||||||||||||||| ||| | ||||||||||||||    |||| | ||||||||||||||||    
T  41327696 atcaaaaccaagcaagtaacgtaaatcttcaattttatttcggtggactaatatctcacttaagaagag 41327628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 41337927 - 41337859
Alignment:
Q  147 atcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaagaagag 215  Q
    ||||||||||||||||||||| ||| | ||||||||||||||    |||| | ||||||||||||||||    
T  41337927 atcaaaaccaagcaagtaacgtaaatcttcaattttatttcggtggactaatatctcacttaagaagag 41337859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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