View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4867_low_15 (Length: 228)
Name: NF4867_low_15
Description: NF4867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4867_low_15 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 35707810 - 35708037
Alignment:
| Q |
1 |
tcatcaacttataagccattggtgagtaccaattaggttgtatgagatgttatgtcaagcttataactagtactaacttagtaatatgttaattctgttt |
100 |
Q |
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| T |
35707810 |
tcatcaacttataagccattggtgagtaccaattaggttgtatgagatgttatgtcaagcttataactagtactaacttagtaatatgttaattctgttt |
35707909 |
T |
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| Q |
101 |
gcagtctaagaactcattgtgttgtcgaacctattataattgcaacacacagacaactcagttccatgcatccaatttttagattattgcatccacatct |
200 |
Q |
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| T |
35707910 |
gcaggctaagaactcattgtgttgtcgaacctattataattgcaacacacagacaactcagttccatgcatccaatttttagattattgcatccacatct |
35708009 |
T |
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| Q |
201 |
gagatataccatggaaatcaataaagtt |
228 |
Q |
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| T |
35708010 |
gagatataccatggaaatcaataaagtt |
35708037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 35723770 - 35723997
Alignment:
| Q |
1 |
tcatcaacttataagccattggtgagtaccaattaggttgtatgagatgttatgtcaagcttataactagtactaacttagtaatatgttaattctgttt |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35723770 |
tcatgaacttataagccattggtgagtaccaattaggttgtatgagatgttatgtcaagcttataactagtactaacttagtaatatgttaattctgttt |
35723869 |
T |
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| Q |
101 |
gcagtctaagaactcattgtgttgtcgaacctattataattgcaacacacagacaactcagttccatgcatccaatttttagattattgcatccacatct |
200 |
Q |
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| T |
35723870 |
gcaggctaagaactcattgtgttgtcgaacctattataattgcaacacacagacaactcagttccatacatccaatatttagattattgcatccacatct |
35723969 |
T |
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| Q |
201 |
gagatataccatggaaatcaataaagtt |
228 |
Q |
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| T |
35723970 |
gagatataccatggaaatcaataaagtt |
35723997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 106 - 226
Target Start/End: Complemental strand, 22512823 - 22512703
Alignment:
| Q |
106 |
ctaagaactcattgtgttgtcgaacctattataattgcaacacacagacaactcagttccatgcatccaatttttagattattgcatccacatctgagat |
205 |
Q |
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|||| ||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
22512823 |
ctaaaaactcattgtgttgtcgaacctattataattgccatgcatagacaactcagttccatgcatctaatttttagattattgcatccacatctgaggt |
22512724 |
T |
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| Q |
206 |
ataccatggaaatcaataaag |
226 |
Q |
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| T |
22512723 |
ataccatggagatcaataaag |
22512703 |
T |
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