View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4867_low_2 (Length: 320)
Name: NF4867_low_2
Description: NF4867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4867_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 51418740 - 51419054
Alignment:
| Q |
1 |
ttgcagaaatggttggatcatcattatcactattaatggtgatgtgtcacatgttgtgttgtgtttgacccagcaggtaaaacatcatgtgcatgcatgt |
100 |
Q |
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| T |
51418740 |
ttgcagaaatggttggatcatcattatcactattaatggtgatgtgtcacatgttgtgttgtgtttgacccagtaggtaaaacatcatgtgcatgcatgt |
51418839 |
T |
|
| Q |
101 |
ggcaggtgaatcatattgaagctcaaataacaaacaaacaactctatttctgcagctcctg---atgttgttgattaccttacctgtagactgtag---- |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
51418840 |
ggcaggtgaatcatattgaagctcaaataacaaacaaacaactctatttctgcagctcctgttaatgttgttgattaccttacctgtagactgtagttgt |
51418939 |
T |
|
| Q |
194 |
ttgtagatgcgttattattaatggtctgcaatgcaatgtattttcgtacttttctgttat------caacaacaacaatagctaccctcttttttacttc |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
51418940 |
ttgtagatgcgttattattaatggtctgcaatgcaatgtattttcgtacttttctgttatcaacaacaacaacaacaatagctaccctcttttttacttc |
51419039 |
T |
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| Q |
288 |
tccacgttactgcgt |
302 |
Q |
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||||||||||||||| |
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| T |
51419040 |
tccacgttactgcgt |
51419054 |
T |
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