View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4867_low_5 (Length: 261)
Name: NF4867_low_5
Description: NF4867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4867_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 40658537 - 40658664
Alignment:
| Q |
1 |
tgttgcatcactggctaataatacttatttcttacttgcgttatgagtccaccaaagcctaggacttagggccggttcaaggaccaagcatcccaaacnn |
100 |
Q |
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| T |
40658537 |
tgttgcatcaccggctaatactatttcttactt-ctcgcgttatgattccaccaaagcctaggacttagggccggttcaaggaccaagcatcccaaacaa |
40658635 |
T |
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| Q |
101 |
nnnnnttgctctttaagattgcttactat |
129 |
Q |
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| T |
40658636 |
aaaaattgctctttaagattgcttactat |
40658664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 179 - 253
Target Start/End: Original strand, 40658664 - 40658738
Alignment:
| Q |
179 |
tcttcattgttcataaaattttgatttttctcattaaactaatacatcaaatcattctctcaaccctttcatctc |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40658664 |
tcttcattgttcataaaattttgatttttctcattaaactaatacatcaaatcattctctcagccctttcatctc |
40658738 |
T |
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