View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4868-Insertion-1 (Length: 1172)
Name: NF4868-Insertion-1
Description: NF4868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4868-Insertion-1 |
 | |
|
| [»] scaffold0024 (7 HSPs) |
| | |
|
Alignment Details
Target: scaffold0024 (Bit Score: 237; Significance: 1e-130; HSPs: 7)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 237; E-Value: 1e-130
Query Start/End: Original strand, 26 - 371
Target Start/End: Complemental strand, 30771 - 30427
Alignment:
| Q |
26 |
gaaaattgagatggtgagcaaactacttacagaaaatatgcgcccatctcgggataatgcaacagaatgagtacctccacaggacacctgaccacaaacc |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30771 |
gaaaattgagatggtgagcaaactacttacagaaaatatgcgcccatctcgggttaatgcaacagaatgagtacctccacaagacacctgaccacaaacc |
30672 |
T |
|
| Q |
126 |
aataaatagatatttcagcataaactagtcataactattattagtagaaaaacactaatgactattttacagccgaccctgagagaactttgtcgttaaa |
225 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| || | | |
|
|
| T |
30671 |
aataaatagatatttcagcat-aactagtcataactattattagtaaaaaaacactaatgactattttacaatcgaccctgagagaactttatctcttga |
30573 |
T |
|
| Q |
226 |
ctcttatcac--taagctaacacctttatggcgttatgtaattcaatggaagctaattagagatgataagataagaaaaaattacataattagaaagcgc |
323 |
Q |
| |
|
|||| || |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30572 |
-ggttatgacgttaagctaacacc-ttatggcattatgtaattcaatggaagctaattagagatgataagataagaaaaaagtacataattagaaagcgc |
30475 |
T |
|
| Q |
324 |
tatttgtgaaggcgaaaccatttccactatcaaagtgactattgtttc |
371 |
Q |
| |
|
|||||||||||| |||| |||||||||||| ||||||||| ||||||| |
|
|
| T |
30474 |
tatttgtgaaggtgaaatcatttccactatgaaagtgactgttgtttc |
30427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 449 - 704
Target Start/End: Complemental strand, 29819 - 29566
Alignment:
| Q |
449 |
acaactcgtgtgattcgtatctttaaccatgaaaaaatccactaaaaaatttagcgcttcaattttttgtttccatgaatatcgcaagatagtgtataac |
548 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| ||| | |||| || |||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
29819 |
acaactcgtttgattcgtatctttaaccatgaaaaaatccactaaaaactttggtgctt-aactttttgattccatgaatatcgcaagatggtgtataac |
29721 |
T |
|
| Q |
549 |
tttgagttgatattaaaaatagtcaaacacacgctacaaatattctagatggatttcatgtaagtaaaatttaaacataacagattccagaaaaacagaa |
648 |
Q |
| |
|
||||| ||||| |||||||||||||| |||||||||||||||||| ||||||||| || ||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
29720 |
tttgaaatgatagtaaaaatagtcaaaaacacgctacaaatattcttcatggatttcttgaaagtaaaatttaaacataatagattcca-aaaaacagaa |
29622 |
T |
|
| Q |
649 |
agagcacctctccttcatcggtcaatgcagtagagtgccatccaccagctgcaata |
704 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
29621 |
agagcacctctccgtcatctgtcaatgcagtagagtgccatccaccagctgcaata |
29566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #3
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 808 - 998
Target Start/End: Complemental strand, 29398 - 29202
Alignment:
| Q |
808 |
taaaatcctatagtttcatcctattatacaaacagcatccagcgactcagtattgtcaaatagcagctaatatggaactatagcgtagtggacagtattg |
907 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
29398 |
taaaatcctatagtttcatcctattatacaaacagcatccagcgactcagtattgtcaaattgcagctaatgtggaactctagcgtagtggacagtattg |
29299 |
T |
|
| Q |
908 |
aacaaatc-ata-tgctctgtcatacactacttagtac-aatgtt-tc-aatatcgactat-acgacgctatagcactgtagggtactgaaatttga |
998 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||| |||||| || |||||| ||||| ||||||||||| |||||||| ||||||||||||| |
|
|
| T |
29298 |
aacaaatcaatattgctctgtcatacactacttagtacaaatgttctcaaatatcaactataacgacgctatatcactgtagcatactgaaatttga |
29202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #4
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 324 - 440
Target Start/End: Complemental strand, 65704 - 65591
Alignment:
| Q |
324 |
tatttgtgaaggcgaaaccatttccactatcaaagtgactattgtttcataaccatgatacctatgctactacatacattggttcaaaaaactgatcatg |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
65704 |
tatttgtgaaggcgaaaccatttccactatcaaagtgactattgtttcataaccatgatacctatg---ctacatacattggttcaaaaaactgatcatg |
65608 |
T |
|
| Q |
424 |
agagggatagtttcaga |
440 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
65607 |
agagggatagttacaga |
65591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 736 - 813
Target Start/End: Complemental strand, 29505 - 29428
Alignment:
| Q |
736 |
tgagtgaacaacaacaaaaaacatacatccagtgtcgtgtcttctgtaacacatccttcacgccaatattaataaaat |
813 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29505 |
tgagtgaacaacaacaaaaaacatgcatgcagtgtcgtctcttctgtaacacatccttcacgccaatattaataaaat |
29428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 449 - 503
Target Start/End: Complemental strand, 65049 - 64995
Alignment:
| Q |
449 |
acaactcgtgtgattcgtatctttaaccatgaaaaaatccactaaaaaatttagc |
503 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
65049 |
acaactcgtgtgatttgtatctttaaccatgaaaaaatccactaaaaaatttagc |
64995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 65755 - 65702
Alignment:
| Q |
7 |
accaataatgcaacagaatgaaaattgagatggtgagcaaactacttacagaaaatat |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
65755 |
accaataatgcaacagaatgaaaattgagatggt----aaactacttacagaaaatat |
65702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University