View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4868-Insertion-12 (Length: 733)

Name: NF4868-Insertion-12
Description: NF4868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4868-Insertion-12
NF4868-Insertion-12
[»] chr8 (4 HSPs)
chr8 (241-731)||(27538382-27538883)
chr8 (72-200)||(27538924-27539052)
chr8 (82-165)||(44496710-44496792)
chr8 (139-185)||(36236911-36236957)
[»] scaffold0642 (1 HSPs)
scaffold0642 (82-165)||(5224-5306)
[»] scaffold0345 (1 HSPs)
scaffold0345 (82-165)||(15137-15219)
[»] scaffold0105 (1 HSPs)
scaffold0105 (82-165)||(23762-23844)
[»] chr2 (2 HSPs)
chr2 (82-165)||(3379444-3379526)
chr2 (669-726)||(4303677-4303734)
[»] scaffold0016 (1 HSPs)
scaffold0016 (82-165)||(52668-52752)
[»] scaffold1526 (1 HSPs)
scaffold1526 (82-150)||(1-68)
[»] chr4 (1 HSPs)
chr4 (102-165)||(15707615-15707677)
[»] chr6 (2 HSPs)
chr6 (85-185)||(1098335-1098438)
chr6 (256-338)||(1098539-1098623)
[»] scaffold0036 (1 HSPs)
scaffold0036 (139-185)||(98701-98747)
[»] chr3 (1 HSPs)
chr3 (139-185)||(31231536-31231582)


Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 241 - 731
Target Start/End: Complemental strand, 27538883 - 27538382
Alignment:
Q  241 cgattaaatactcagtaagtataactttcttagccatttctttgttatttttcagaaattagttgcttaaattttcagagaagcctaatgaaaagtttaa 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27538883 cgattaaatactcagtaagtataactttcttagccatttctttgttacttttcagaaattagttgctcaaattttcagagaagcctaatgaaaagtttaa 27538784  T
Q  341 gtagagcacaagtctatgtaccctttgattattgtttctcc---agcagccacacaatgtgttatattgagaggttcaagcgacagttgtgctaaagggg 437  Q
    |||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  27538783 gtagagcacaagtctatgtaccctttgattattgtttctcctacagcagccacacaatgtgttatattgagaggttcaagcgacggttatgctaaagggg 27538684  T
Q  438 catttagtggcaatggtatggtaatgtattctcactaaggtactttgccaatacaatcaattgtcctatgtctgactgaatgtgtaagtagggtcctatt 537  Q
    ||||  || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27538683 cattcggtagcaatggtatggtaatgtattctcactaaggtactttgctaatacaatcaattgtcctatgtctgactgaatgtgtaagtagggtcctatt 27538584  T
Q  538 aatagtttttgattgcaattgactggtgtt--------ttagcaggattttgggacgagtattgatcgctatgagctttgtagggagaaaaagtgaaatt 629  Q
    |||||||||| |||||||||||||| ||||        ||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||    
T  27538583 aatagttttttattgcaattgactgatgttgctaagaattagcaggattttgggacgtgtattgatcattatgagctttgtagggagaaaaagtgaaatt 27538484  T
Q  630 tatgttaaagataagttctatatgttaatgcaggagttagctagctaattccaatttctgaagcacatttatatggtcttgcacacattcaacacttttg 729  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||| ||||||    
T  27538483 tatgttaaagataagttctatatgttcatggaggagttagctagctaattccaatttctgaagcacatttatacagtcttccacacattcaacgcttttg 27538384  T
Q  730 at 731  Q
    ||    
T  27538383 at 27538382  T

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Target: chr8; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 72 - 200
Target Start/End: Complemental strand, 27539052 - 27538924
Alignment:
Q  72 agatatatattttcaaatgtggttgctaaagtgattcctgaaacttgaaaagcaatgttatgtaaatttgtttaactctgtgatttaaatcttaagagaa 171  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27539052 agatatatactttcaaatgtggctgctaaagtgattcctgaaacttgaaaagcaatgttatgtaaatttgtttaactctgtgatttaaatcttaagagaa 27538953  T
Q  172 caacacatttcaaaaatagaataaatgca 200  Q
    ||||||||||||||||||||| |||||||    
T  27538952 caacacatttcaaaaatagaacaaatgca 27538924  T

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Target: chr8; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 82 - 165
Target Start/End: Original strand, 44496710 - 44496792
Alignment:
Q  82 tttcaaatgtggttgctaaagtgattcctgaaacttgaaaagcaatgttatgtaaatttgtttaactctgtgatttaaatctta 165  Q
    |||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44496710 tttcaaatgtggctgctaaagtgattcttgaaacttgaaaa-caatgttatgtaaatttgtttaactctgtgatttaaatctta 44496792  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 36236957 - 36236911
Alignment:
Q  139 ttgtttaactctgtgatttaaatcttaagagaacaacacatttcaaa 185  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  36236957 ttgtttaactctgtgatttaaatcttaaaagaacaacacatttcaaa 36236911  T

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Target: scaffold0642 (Bit Score: 68; Significance: 6e-30; HSPs: 1)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 82 - 165
Target Start/End: Original strand, 5224 - 5306
Alignment:
Q  82 tttcaaatgtggttgctaaagtgattcctgaaacttgaaaagcaatgttatgtaaatttgtttaactctgtgatttaaatctta 165  Q
    |||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5224 tttcaaatgtggctgctaaagtgattcttgaaacttgaaaa-caatgttatgtaaatttgtttaactctgtgatttaaatctta 5306  T

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Target: scaffold0345 (Bit Score: 68; Significance: 6e-30; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 82 - 165
Target Start/End: Original strand, 15137 - 15219
Alignment:
Q  82 tttcaaatgtggttgctaaagtgattcctgaaacttgaaaagcaatgttatgtaaatttgtttaactctgtgatttaaatctta 165  Q
    |||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15137 tttcaaatgtggctgctaaagtgattcttgaaacttgaaaa-caatgttatgtaaatttgtttaactctgtgatttaaatctta 15219  T

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Target: scaffold0105 (Bit Score: 68; Significance: 6e-30; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 82 - 165
Target Start/End: Complemental strand, 23844 - 23762
Alignment:
Q  82 tttcaaatgtggttgctaaagtgattcctgaaacttgaaaagcaatgttatgtaaatttgtttaactctgtgatttaaatctta 165  Q
    |||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23844 tttcaaatgtggctgctaaagtgattcttgaaacttgaaaa-caatgttatgtaaatttgtttaactctgtgatttaaatctta 23762  T

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Target: chr2 (Bit Score: 68; Significance: 6e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 82 - 165
Target Start/End: Original strand, 3379444 - 3379526
Alignment:
Q  82 tttcaaatgtggttgctaaagtgattcctgaaacttgaaaagcaatgttatgtaaatttgtttaactctgtgatttaaatctta 165  Q
    |||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3379444 tttcaaatgtggctgctaaagtgattcttgaaacttgaaaa-caatgttatgtaaatttgtttaactctgtgatttaaatctta 3379526  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 669 - 726
Target Start/End: Complemental strand, 4303734 - 4303677
Alignment:
Q  669 gctagctaattccaatttctgaagcacatttatatggtcttgcacacattcaacactt 726  Q
    ||||||||||||||||||| ||||||||||| ||| ||||||||||||| | ||||||    
T  4303734 gctagctaattccaatttccgaagcacatttttatagtcttgcacacatccgacactt 4303677  T

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Target: scaffold0016 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 82 - 165
Target Start/End: Complemental strand, 52752 - 52668
Alignment:
Q  82 tttcaaatgtggttgctaaagtgattcctgaaacttgaaaagcaatgttatgtaaatttgtttaactc--tgtgatttaaatctta 165  Q
    |||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||    
T  52752 tttcaaatgtggctgctaaagtgattcttgaaacttgaaaa-caatgttatgtaaatttgtttaactctatgtgatttaaatctta 52668  T

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Target: scaffold1526 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold1526
Description:

Target: scaffold1526; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 82 - 150
Target Start/End: Complemental strand, 68 - 1
Alignment:
Q  82 tttcaaatgtggttgctaaagtgattcctgaaacttgaaaagcaatgttatgtaaatttgtttaactct 150  Q
    |||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  68 tttcaaatgtggctgctaaagtgattcttgaaacttgaaaa-caatgttatgtaaatttgtttaactct 1  T

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Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 102 - 165
Target Start/End: Original strand, 15707615 - 15707677
Alignment:
Q  102 gtgattcctgaaacttgaaaagcaatgttatgtaaatttgtttaactctgtgatttaaatctta 165  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15707615 gtgattcttgaaacttgaaaa-caatgttatgtaaatttgtttaactctgtgatttaaatctta 15707677  T

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Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 1098335 - 1098438
Alignment:
Q  85 caaatgtggttgctaaagtgattcctgaaacttgaaaagcaatgttatgtaaat---ttgtttaactctgtgatttaaatcttaagagaacaacacattt 181  Q
    ||||||||| | |||||||||||| |||||| |||||| |||||||||||||     |||||||||||| | |||||||||||||||||||| |||||||    
T  1098335 caaatgtggctcctaaagtgattcatgaaacatgaaaaacaatgttatgtaatactattgtttaactctataatttaaatcttaagagaacaccacattt 1098434  T
Q  182 caaa 185  Q
    ||||    
T  1098435 caaa 1098438  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 256 - 338
Target Start/End: Original strand, 1098539 - 1098623
Alignment:
Q  256 taagtataactttcttagccatttc-tttgttatttttcagaaattagttgcttaaattttca-gagaagcctaatgaaaagttt 338  Q
    ||||||||||||| |||| |||||| ||||||| |||||| || ||||||||| ||||| ||| | ||||| |||||||||||||    
T  1098539 taagtataacttttttagtcatttcttttgttacttttcaaaagttagttgctcaaattatcaggggaagcgtaatgaaaagttt 1098623  T

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Target: scaffold0036 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 98701 - 98747
Alignment:
Q  139 ttgtttaactctgtgatttaaatcttaagagaacaacacatttcaaa 185  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  98701 ttgtttaactctgtgatttaaatcttaaaagaacaacacatttcaaa 98747  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 31231536 - 31231582
Alignment:
Q  139 ttgtttaactctgtgatttaaatcttaagagaacaacacatttcaaa 185  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||    
T  31231536 ttgtttaactctgtgatttaaatcataaaagaacaacacatttcaaa 31231582  T

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