View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4868-Insertion-14 (Length: 727)
Name: NF4868-Insertion-14
Description: NF4868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4868-Insertion-14 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 402 - 727
Target Start/End: Complemental strand, 52230243 - 52229918
Alignment:
| Q |
402 |
gaagaaagatgctcaattattattgttaagtttgatagcatttcatttcacaagggaagattttcctttttgattccaatgtggcataattggatggata |
501 |
Q |
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| T |
52230243 |
gaagaaagatgctcatttattattgttaagtttgatagcatttcatttcacaagggaagattttcctttttgataccaatgtggcataattggatggata |
52230144 |
T |
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| Q |
502 |
gaacatactagacacctaccttaaattggacaaagcagcaagaatatttcactcttgaaaaacaagacacagataacactgaaaaaatgaacgaactagt |
601 |
Q |
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| T |
52230143 |
gaacatactagacacctaccttaaattggacaaagcagcaagaatatttcactcttgaaaaacaagacacagataacactgaaaaaatgaacgaactagt |
52230044 |
T |
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| Q |
602 |
agttgattaattgaggagtctttgattctgaaattaatttgacnnnnnnncacagattctgaaatttctttgactgaaaaaatgaatgaagcaaatttcg |
701 |
Q |
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| T |
52230043 |
agttgattaattgaggagtctttgattctgaaattaatttgactaaaaaacacagattctgaaatttctttgactgaaaaaatgaatgaagcaaatttcg |
52229944 |
T |
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| Q |
702 |
aaaccaaacaaaatttcatcaaaaca |
727 |
Q |
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| T |
52229943 |
agaccaaacaaaatttcatcaaaaca |
52229918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 7 - 288
Target Start/End: Complemental strand, 52230638 - 52230357
Alignment:
| Q |
7 |
agaataatcgtcatagtccaaaacaaaatcttattggataaagtcatgtttgaataaacaacttaattaagctttattttataaaataagtatttatcat |
106 |
Q |
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| T |
52230638 |
agaataatcgtcatagtccaaaacaaaatcttatcggataaagtcatgtttgaataaacaacttaattaagctttattttataaaataagtatttatcat |
52230539 |
T |
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| Q |
107 |
gtaaatgcttatatacaacctacttttatagtaaaaataagttcattcggaagtaaaaataataacttatagacatgtttgagactgtattcataattaa |
206 |
Q |
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| T |
52230538 |
gtaaatgcttatataaaacctacttttatagtaaaaataagttcattcggaagtaaaaataataacttatagacatgtttgagactgtattcataattaa |
52230439 |
T |
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| Q |
207 |
gttcttccaaatagtcacacacatcactgattgttcaactcagataaatcaattcaaagatacccaaatcagattagattgt |
288 |
Q |
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| T |
52230438 |
gttcttccaaatagtcacacacatcactgattgttcaactcagataaatcaattcaaagatacccaaatcagattagattgt |
52230357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 52230346 - 52230308
Alignment:
| Q |
250 |
ataaatcaattcaaagatacccaaatcagattagattgt |
288 |
Q |
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| T |
52230346 |
ataaatcaattcaaagatacccaaatcaaattagattgt |
52230308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 348 - 378
Target Start/End: Complemental strand, 52230297 - 52230267
Alignment:
| Q |
348 |
gacagcaccaattacgattaccaattgtttg |
378 |
Q |
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| T |
52230297 |
gacagcaccaattacgattaccaattgtttg |
52230267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 77
Target Start/End: Original strand, 26499589 - 26499618
Alignment:
| Q |
48 |
agtcatgtttgaataaacaacttaattaag |
77 |
Q |
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| T |
26499589 |
agtcatgtttgaataaacaacttaattaag |
26499618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 78
Target Start/End: Original strand, 40591010 - 40591039
Alignment:
| Q |
49 |
gtcatgtttgaataaacaacttaattaagc |
78 |
Q |
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| T |
40591010 |
gtcatgtttgaataaacaacttaattaagc |
40591039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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